GENSCAN 1.0 Date run: 6-Nov-116 Time: 12:39:15 Sequence gi568815597r:240392972_240593475 : 200504 bp : 40.08% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 517 664 148 0 1 103 71 58 0.546 4.49 1.02 Intr + 2533 2696 164 2 2 22 65 138 0.043 3.67 1.03 Intr + 27888 28024 137 2 2 33 72 135 0.273 4.85 1.04 Intr + 31984 32162 179 1 2 15 53 152 0.040 3.04 1.05 Intr + 40971 41022 52 1 1 41 82 63 0.063 -1.95 1.06 Intr + 45090 45239 150 0 0 39 92 109 0.012 4.76 1.07 Intr + 79401 79482 82 0 1 67 87 47 0.025 1.22 1.08 Intr + 80100 80268 169 2 1 71 49 124 0.600 5.40 1.09 Intr + 81157 81248 92 2 2 105 -17 107 0.563 0.69 1.10 Intr + 90802 90898 97 0 1 106 100 72 0.636 8.86 1.11 Term + 92971 93161 191 2 2 81 41 97 0.496 0.93 1.12 PlyA + 93291 93296 6 1.05 2.11 PlyA - 93336 93331 6 -0.45 2.10 Term - 94434 94244 191 1 2 60 54 73 0.523 -2.27 2.09 Intr - 94782 94637 146 2 2 88 97 118 0.870 11.71 2.08 Intr - 100505 100002 504 1 0 147 47 797 0.075 72.66 2.07 Intr - 104626 104507 120 0 0 68 75 91 0.286 4.49 2.06 Intr - 115881 115817 65 0 2 33 89 77 0.001 -1.10 2.05 Intr - 120755 120665 91 1 1 57 93 70 0.002 3.48 2.04 Intr - 132403 132318 86 1 2 71 121 56 0.076 4.90 2.03 Intr - 141982 141906 77 2 2 92 13 58 0.042 -2.98 2.02 Intr - 143888 143509 380 1 2 66 80 208 0.021 11.48 2.01 Init - 165732 165650 83 0 2 90 47 50 0.019 1.59 2.00 Prom - 179943 179904 40 -5.85 3.05 PlyA - 180549 180544 6 1.05 3.04 Term - 186840 186763 78 0 0 126 45 76 0.677 3.88 3.03 Intr - 193603 193461 143 2 2 105 38 68 0.534 2.65 3.02 Intr - 195019 194847 173 0 2 50 63 90 0.686 1.36 3.01 Init - 197355 197288 68 0 2 37 98 64 0.705 2.90 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init - 143833 143509 325 1 1 41 80 210 0.877 13.04 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815597r:240392972_240593475|GENSCAN_predicted_peptide_1|486_aa ASPYSLRHNNIEIRPINYPTVASKYSSERKSHTSLTLKQKLEMVNLNEEDAINNIHNSWK QVKISALTGVWKKLIVTLTDGFEDSKTSVEKVTANVVEIERELEFRFYKKQVPRLDLFGK TGREPEEAGTAVRPDAGPTSMEEREGRKAGIVQVPENKAMNINAKNSLKRLNPSGGRAIV ITHRKYLVFLMAVSAVEKRKEYSGVAVVEEKFRNGPASVAIILELCSFLETTAYFFMKPK LGEKEVSPNAFFSIWHEFSSDFKDFWKKENKLLLQERVKEAEEVCRQKKGKSLYKIKPRH DSGIITAEAVFEPRVIILIGLDPLGCKVGGKRQEQCDALPRVPRPRLYPQMARQSWLPES ESKDKHENLNNEKQNENESLQRLSQNSADLRECELGMGLRPSVRHQEDVALLKEQSKEGC HQEGLCSASIPPINLLLTTLSQSLENQSKIDNSSSWRRILEPRIWRKLSRWAAAEYRSWC AVALCC >gi568815597r:240392972_240593475|GENSCAN_predicted_CDS_1|1461_bp gcctccccgtattccctgagacacaacaatattgaaattaggccaattaattacccaaca gtggcctctaagtattcaagtgaaagaaagagtcacacatctctcactttaaaacaaaag ctagaaatggttaaccttaatgaggaagatgccatcaataacattcataattcctggaag caggtcaaaatatcagcgttaacaggagtttggaagaagttaattgtaaccctcacagat ggttttgaggattccaagacatcagtggagaaagtaactgcaaatgtggtagaaatagaa agagaattagagttcaggttctacaaaaagcaagtgccaagattggatttatttggaaaa acaggaagggagccagaggaagctgggacagctgttagacctgatgcaggtccaacctcc atggaggagagggaaggaaggaaggctggcattgttcaggtgcctgagaataaagccatg aacataaatgctaaaaattccttaaagaggttaaatcctagtggagggagagccatagtt atcacacatagaaaatatcttgtgtttctgatggcggtcagtgctgtagagaaaaggaag gaatattcaggggtggctgttgtggaagagaaattccgaaatggtcctgcttctgtagct atcattttagagctctgcagctttttggagaccacggcatatttcttcatgaaaccaaaa cttggagagaaggaggtgtccccaaatgctttcttcagtatctggcatgaattcagctct gactttaaagacttctggaagaaagagaacaaacttcttctacaagagagagtaaaagaa gccgaagaggtgtgtagacagaagaaaggaaaatcactttataaaataaaaccaagacat gactctggaattatcacggcagaggctgtatttgagccacgagtgatcattctaattgga ttagatccactgggatgtaaagttggtgggaagcgccaagagcagtgtgacgctttgccc agggtgcccagaccccgtttatatccacagatggctcggcagagttggctgccggagagt gaaagcaaagataagcatgaaaacttgaacaatgaaaagcagaatgaaaatgagtcattg caacgactttcacaaaattcagctgacctgagagaatgtgagttgggaatggggctcagg ccatcagtgcgtcatcaggaagatgtggcattgctcaaagagcagagcaaggagggttgc caccaggaaggtctctgttctgcaagcattcccccaataaaccttctgctcacaactctg tctcagagtttggaaaaccaatctaagatagacaattccagttcctggagaagaatactc gaacccaggatttggagaaagctcagtcgttgggcagctgctgagtatcggtcctggtgt gctgtagccctgtgttgttaa >gi568815597r:240392972_240593475|GENSCAN_predicted_peptide_2|580_aa MDSDTNKFENCWSNQSQGVQGRLFPHFSPNSSFLQDPTFASFKSHIMHQRPYPHARSYRW LPDLQPPLPFCLKLYRWLPDLQPPLPFCLKLYRWLPDLQPPLPFCLKLYRWLPDLQPPLP FCLKLLTHIFHMSCFPIRGTITNPPLGLRKSNCPDPLVLLCFFPQLVAKYLASPNFRNPK KSPSWLQAESQESLKIHPLGLLPISPERRIQTFITVHKTMHDLVPICRIPISGYWPPRTV PAQILSQGILEVRGPGICIPSVIDSTKPFAFAHIIALRNPVQISRDPLTCDFLSSSCSFS RMFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEA LVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQS CAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQESRFTAASLPT VIPGLQMMALLSTRAATPLTNTIIIALVTRDLPGNTVGSNPESWETAPMVISIIQLNVLL FFLDTAALGHIPILLLPAPAVISPYSPFPPLANPADPQQR >gi568815597r:240392972_240593475|GENSCAN_predicted_CDS_2|1743_bp atggattctgacaccaacaagtttgagaactgctggtctaaccaatcacagggcgtccag ggaaggcttttcccacatttcagcccaaatagcagttttcttcaagatccaacatttgcc tcttttaaatctcacattatgcatcagagaccttatccccatgcacgtagctaccgatgg cttccagatctacagcccccactgccattttgtcttaaactctacagatggcttccagat ctacagcccccgctgccattttgtcttaaactctacagatggcttccagatctacagccc ccgctgccattttgtcttaaactctacagatggcttccagatctacagcccccgctgcca ttttgtcttaaactcctgacccatatttttcacatgtcatgtttccccatccgaggaaca attaccaatccccctcttggactgagaaaatcaaattgcccagacccactcgtcctgctg tgtttcttccctcagttggtagctaagtatctggcgtcaccaaattttcgaaacccaaag aaaagcccctcatggctccaggctgagagccaggagagccttaagatccatcctttgggc ctgctgcctatctctccagagagaagaatccaaacatttatcacggtccataagaccatg catgatctggtccccatctgccgtatccccatctctggatactggccccctcgcactgtt ccagctcagatcttgagtcagggaattctggaagtacgtggacctggaatctgcattccc agcgtcatcgacagtaccaaaccctttgcttttgcccatatcatcgccctgaggaatcct gttcagatttcaagggacccacttacttgtgacttcctaagctcctcctgctccttctcc aggatgttctggaagctttccctgtccttgttcctggtggcggtgctggtgaaggtggcg gaagcccggaagaaccggccggcgggcgccatcccctcgccttacaaggacggcagcagc aacaactcggagagatggcagcaccagatcaaggaggtgctggcctccagccaggaggcc ctggtggtcaccgagcgcaagtacctcaagagtgactggtgcaagacgcagccgctgcgg cagacggtgagcgaggagggctgccggagccgcaccatcctcaaccgcttctgctacggc cagtgcaactccttctacatcccgcggcacgtgaagaaggaggaggagtccttccagtcc tgcgccttctgcaagccccagcgcgtcacctccgtcctcgtggagctcgagtgccccggc ctggacccacccttccgactcaagaaaatccagaaggtgaagcagtgccggtgcatgtcc gtgaacctgagcgactcggacaagcaggaatctagatttacagcagcatctcttcctaca gttatccctggcctacagatgatggcactactgagcaccagagctgctacccctctcacc aacacaatcatcatagctttggtaactagagaccttcctgggaacacagttggttcaaat cctgaatcatgggagactgctcccatggtgataagcattatccaacttaatgtcctgctc ttcttccttgatacagcagccttgggacacattcccatccttcttctcccggctcctgct gtgatttcaccgtacagtccgtttcctcccttagccaatccagcagatccccagcagaga tga >gi568815597r:240392972_240593475|GENSCAN_predicted_peptide_3|153_aa MTVEQFEVQKLASYRDTTGPQPSSFPSKSKVLALDSQAGGHRNGKGLEGIGQSSENICPN RPTNQAKENNTTSVDSESSIGSTSFLTYQHQELVLFSANKLSPGQASALGVFTKHRSSRN KRENYSFKKCPVVLALPVEIHHTSKPKCYAFKL >gi568815597r:240392972_240593475|GENSCAN_predicted_CDS_3|462_bp atgacagtggaacaatttgaggtgcaaaaactggcaagctatcgagatactacagggcca cagccaagcagttttccatcaaagagcaaggtgctggcccttgacagccaggctggaggg cacagaaatggtaagggactggagggaatagggcagagttcagaaaacatctgccctaac aggcctacaaatcaggccaaagagaataatactacctcagtggattcagaatctagcata gggtccacttccttccttacataccagcatcaggaactggttctcttctctgctaataag cttagtcctggacaagcttctgcacttggagtattcactaagcacagaagcagcaggaac aagagggagaactattcctttaagaaatgccctgttgttttagctttaccagttgaaatc catcacacttcaaagcccaaatgctacgccttcaagctctga