GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:13:02

Sequence gi568815597f:65048408_65326174 : 277767 bp : 42.15% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 Intr -    706    570  137  0  2   40   74   121 0.190   5.19
 1.07 Intr -   1315   1126  190  2  1   36   98    64 0.027  -0.08
 1.06 Intr -  10184  10057  128  1  2   -3   87   129 0.008   3.10
 1.05 Intr -  17884  17714  171  0  0   55   83   102 0.061   4.54
 1.04 Intr -  19777  19500  278  1  2   50   38   164 0.065   2.99
 1.03 Intr -  24874  24748  127  0  1   76   29   102 0.023   2.86
 1.02 Intr -  44240  44033  208  0  1  -11   59   188 0.048   3.21
 1.01 Init -  54127  53941  187  1  1   82   53   140 0.184   9.17
 1.00 Prom -  54877  54838   40                              -7.75

 2.00 Prom +  58899  58938   40                              -4.55
 2.01 Sngl +  62243  62422  180  1  0   99   49   137 0.463   5.65
 2.02 PlyA +  66023  66028    6                               1.05

 3.02 PlyA -  66962  66957    6                               1.05
 3.01 Sngl -  75540  74572  969  0  0   44   47   275 0.842  15.46
 3.00 Prom -  93754  93715   40                              -6.05

 4.11 PlyA -  93800  93795    6                               1.05
 4.10 Term - 100153  99845  309  1  0  101   47   250 0.730  16.28
 4.09 Intr - 105468 105373   96  0  0   93   72    22 0.010   0.39
 4.08 Intr - 106301 106151  151  1  1   28   10   201 0.035   5.54
 4.07 Intr - 117637 117562   76  2  1   92   91    70 0.698   5.35
 4.06 Intr - 126946 126729  218  0  2   86  -14   212 0.041   8.02
 4.05 Intr - 128359 128224  136  2  1   75   42    68 0.373  -0.39
 4.04 Intr - 130000 129967   34  1  1   53   60    46 0.141  -4.82
 4.03 Intr - 132579 132419  161  1  2  104   41   141 0.364   9.79
 4.02 Intr - 145282 145027  256  1  1   90   48   118 0.109   4.09
 4.01 Init - 146835 146785   51  0  0   74   94    18 0.378   2.21
 4.00 Prom - 148450 148411   40                              -3.75

 5.00 Prom + 155094 155133   40                              -5.35
 5.01 Init + 157521 157646  126  2  0    7   66   150 0.565   4.36
 5.02 Intr + 161874 161950   77  2  2   56  121    41 0.622   1.59
 5.03 Intr + 169473 169495   23  0  2   47  108    47 0.407  -1.13
 5.04 Intr + 170347 170519  173  2  2   83   66   145 0.640  10.54
 5.05 Intr + 176345 176463  119  1  2   65   89   218 0.454  17.94
 5.06 Term + 186138 186222   85  0  1  116   49    55 0.303   0.55
 5.07 PlyA + 187087 187092    6                               1.05

 6.04 PlyA - 187211 187206    6                               1.05
 6.03 Term - 199674 199559  116  1  2   77   53   140 0.900   7.15
 6.02 Intr - 206471 206375   97  2  1   57   -3   221 0.014   8.56
 6.01 Init - 208636 208622   15  1  0   81   65    25 0.614  -0.16
 6.00 Prom - 209067 209028   40                              -6.35

 7.02 PlyA - 209272 209267    6                               1.05
 7.01 Sngl - 210012 209836  177  0  0   69   41   189 0.296   7.00
 7.00 Prom - 210101 210062   40                              -6.35

 8.00 Prom + 212549 212588   40                              -4.75
 8.01 Init + 217201 217503  303  0  0   65    5   181 0.008   4.82
 8.02 Intr + 229304 229540  237  1  0  102   94    91 0.645   7.99
 8.03 Intr + 261306 261531  226  2  1  127   74   241 0.730  23.24
 8.04 Term + 270911 271185  275  0  2    6   47   196 0.496   1.95
 8.05 PlyA + 271219 271224    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  40901  40763  139  1  1   72   38   128 0.902   2.65
S.002 Init -  44208  44033  176  0  2   65   59   157 0.807   9.37
S.003 Init - 101742 101692   51  0  0   85   87    60 0.815   6.81
S.004 Term - 106301 106145  157  1  1   28   47   214 0.819   7.72
S.005 Init - 201843 201828   16  0  1   99   77    -6 0.896  -0.19


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_1|476_aa
MKKQENITPPKENNNSPAADPNKKEIHKILILKNLGELQEDSEKEYREIRKTTQDMNEKF
TRGPAERRVKSKVMAKHLKFIARTVMVQEGNMEGAYRTLSRILTTDRLIEGIKPQRYCEK
PCHRRQRESYESKQGKKVAASVAGFNDPSSLDHKPSQQLGGRLLPTVPEKELARWDFSER
SPQRYSRPGGKASSGADRRVKAARGGEQADSSPSFRGAWGTRTGDRHNQRVRAGPTGATG
LQGGRMAAACPLPEPPFSQQRRESARTKGEGTWRRRRLLAAADPRASPCLPVRGILSLTL
LPARQLPPSWRKTTPVLIPALKESPSLHGEPSERVMQPPERMPLTDTVTDRLPWLSYHSA
DAVYSKVNMWVMAWNLSFFASAPQKSTLHNPSVDHSSASQQTCAPRSELEYGWYPKGRTR
GQSESSCPPRWLQLPLEGADCGCKPPNSRKRLLTVNEGLPILEIDPVALGVDSGQX

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_1|1428_bp
atgaaaaagcaagaaaatataacaccaccaaaggaaaacaataattctccagcagcagat
cccaataaaaaagaaattcacaaaatactgattttaaagaaccttggtgagctacaagag
gattctgaaaaagaatacagagaaatcagaaaaacaactcaggatatgaatgagaaattt
accagaggtcctgcagagcggagagttaaatccaaggtcatggcaaaacatctgaagttc
atcgccaggactgtgatggtacaggaagggaacatggaaggtgcatacaggaccctaagc
agaatcctcactacggataggctgattgagggcattaagcctcaacggtactgtgagaag
ccatgccaccggcgacagagggaaagctatgaaagcaagcaaggcaaaaaggtagcagca
tctgtggcaggtttcaatgatccatccagtttagatcacaagcccagccagcagctggga
ggaaggctcttacccacagtcccagagaaagagctggcaaggtgggacttctctgaacgt
agcccacaacggtacagccgcccgggagggaaagcgagctctggggcggacaggcgagtg
aaggcagccagaggaggggagcaggctgacagctcccccagcttccgcggcgcgtggggg
accaggacgggcgaccgccacaatcagagggtgcgagctggacccaccggggccactggt
ctccagggtgggaggatggctgctgcctgtccgctgccggagcctcctttctcccagcag
aggagggagagcgcgcgcacgaagggggaggggacttggcggagacgccggctcctggcc
gcagctgaccccagggcttctccctgccttcctgtgcgaggaattctttccctcactctg
ctacccgcacgccagctgccaccttcctggagaaagaccacacctgtgcttatccctgct
ttgaaggagagtccttcacttcatggggagccttcagagagagtaatgcagccaccagaa
aggatgccgttgaccgacacagtgactgacaggctgccctggctcagttatcacagtgct
gatgctgtctattctaaagtgaatatgtgggtgatggcttggaacttaagcttttttgct
agtgccccacaaaagagtaccctccacaacccatctgtggaccacagcagtgcctctcaa
caaacatgtgccccaaggagtgagttagaatatggatggtatcccaaaggaaggacccgt
ggccagtcagaaagctcatgcccaccaaggtggttacagctgcccctggaaggggcagat
tgtggatgcaagccccctaacagcagaaaaaggctattgacagtgaatgagggacttcca
attctagaaatagatcccgttgccttaggggtggatagtggacaagnn

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_2|59_aa
MAPASAPDEGLRMLPIMVEGEGGAGMSHGERRSKEVVVGEGARPLNNQISCELTNQEFT

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_2|180_bp
atggctccagcatctgctcctgatgaagggctcagaatgcttccaatcatggtggaaggt
gaagggggagcaggtatgtcacatggcgagagaagaagcaaggaggtggtggtgggggaa
ggtgccagaccgttaaacaaccagatctcatgtgaactaactaaccaagaattcacttag

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_3|322_aa
MSELPFTIASKRIKYLGIKLTRDVKDLFKENYKSLLNEIKEDTNKWKNIPYSWIGRINIM
KMAILPKLIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKTILSKKNKAGDITLP
DFKLYYKATVTKTAWYWYQNRDIDQWNRTEASEITPHIYNHLIFDKPDKNKKWGKDSLFN
KWCWENWLAICRKLKLGPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKD
FMTKTPKTMATKAKIDKWDLIKLKSFCTAKETTIRVDRQPTEWEKIFAIYPSDKGLIPRI
YKELKQIYKKKSNNPIKKWQRI

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_3|969_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaataaaactt
acaagggatgtgaaggacctcttcaaggagaactacaaatcactactcaatgaaataaaa
gaggacacaaacaaatggaagaacattccatactcatggataggaagaatcaatatcatg
aaaatggccatactgcccaaactaatttatagattcaatgccatccccattaagctacca
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcattgccaagacaatcctaagcaaaaagaacaaagctggagacatcacgctacct
gacttcaaactatactacaaggctacagtaacaaaaacagcatggtactggtaccaaaac
agagatatagatcaatggaacagaacagaggcctcagaaataacaccacacatctacaac
catctgatttttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagctatatgcagaaagctgaaactgggtcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttaaatgttagaccgaaaacc
ataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagac
ttcatgactaaaacaccaaaaacaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtggacaggcaacct
acagaatgggagaaaatttttgcaatctacccatctgacaaagggctaatacccagaatc
tacaaagaacttaaacaaatttacaagaaaaaatcaaacaaccccatcaaaaagtggcaa
aggatatga

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_4|495_aa
MDELMGWLSQEWAPDKSGRPWGLSKHGFWYEGVVLEPIPSHTPYCQQILRDNHIVKREAK
QKNLENSRHGHVKSGKACSRGNIKCVVKQPIAKEISMARRKPENAESKIPVNELNSLVRP
LYPEVSDCMYGTELGEALLTLVSSLRQNITNNGSAHADSAVCRRTQLGLSTQQCISLIVA
SSFLICKREVDRSTSAISVVALQLPAFGGLCEGNSGNALLENYSKGSKNVCCSATSGRET
GTGRADADTLLTGPPQQSARTSSPLSGPTHNHPSTASKNNDTSGNTYSQLPVPTTCCAEG
HQIPPPETSHRTIVVLYWVDALDNPLKEDHLVQLNKTDIVRVLTETLAARIEATFLDQTV
PTRYANSHLRAFALAVPSSWNNLFLIITSSLFTPLTGAGLDVLPQEVAAGEMLETKVLGD
PLAHGALARAGRPEDDRAQEFGSHCLREEGGGQTRSPDRGPGGSPGNFVSRPPTSGTLRS
HWDSPAAPTGGRRDF

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_4|1488_bp
atggatgaattaatgggttggttatctcaggagtgggctcctgataaaagcggccgaccg
tggggcttgagtaagcatggattttggtatgagggagtggtcctggaaccaatcccttcc
cacaccccttactgtcagcagatactgagggataaccatatagttaaaagagaagcaaaa
cagaagaatttggaaaattctcggcatggccatgtaaagagtggaaaagcatgttccaga
gggaatattaagtgtgtggtcaaacaacctattgctaaagagattagcatggctagaagg
aagccagaaaatgctgagagtaagattcctgtaaatgagctcaattcccttgtaagacca
ctctaccctgaagtatcagactgcatgtatgggacagaactaggagaagccttgctcacc
ctggtatcatcccttcgccaaaacatcactaataatggcagtgcacacgcagactcagcc
gtgtgccggagaacacagctcggactctcaacacagcaatgtatttcacttatcgtggcc
tcaagtttcctcatctgcaagagagaggtagaccgttcgacctctgctatctctgtggtg
gcacttcaactccctgcatttggaggcttgtgtgaaggtaactctggcaatgccctgttg
gagaactacagcaagggctccaaaaatgtgtgctgctcagcaacctccggaagggaaacg
ggaacagggagagctgatgcggacactcttctgacaggacctcctcagcaatcagcaagg
acaagcagtccactgagcgggccaacacacaatcatccttcaacagccagcaagaacaac
gataccagtggcaacacatatagccaactccctgtgcctaccacttgctgtgccgaaggc
caccagatacctccacctgaaacttctcacagaactatcgtggttttgtattgggtagat
gccttggataatcctttgaaggaggatcatttagtccaacttaataaaactgatatcgtt
cgcgtactgacggaaacactggcagcacgtattgaggccacatttctggatcagacagtg
ccgacacgctatgctaattcccaccttagggcctttgcacttgctgttccttcttcctgg
aacaacctgttcctaatcatcacaagctcattgtttacgcccctcaccggtgctggcctt
gatgttctcccgcaagaagtggccgctggagagatgctggagaccaaagttctgggcgat
cctctggcacacggtgcccttgcccgagccgggcggcccgaggatgaccgcgcgcaggag
tttggaagccattgccttcgcgaggaggggggcggtcaaacgcgcagccccgaccgcggc
cccggaggaagccccgggaactttgtttctcggccccctacctctggcaccctccgctct
cactgggactcgccggccgcccctacagggggaaggagagacttttaa

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_5|200_aa
MCHAPVLWALALTVPSTGSALSPDIRVDRWIQIPTQITLPQKDTTLALKVALFEASHFQL
CLSFLRGSFIAVYLTSFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG
RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKGTTIKAP
FALLRTTRSWRQGALLFESD

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_5|603_bp
atgtgccatgcacctgtgctgtgggcccttgcacttactgttccctctaccggcagtgcc
ctgtctccagatatccgtgtggatcgctggatacagatccctacacagataacccttcct
cagaaggacaccacactcgccctgaaagtggcactctttgaggccagtcacttccaactc
tgcctttcatttctgagaggaagctttatcgcggtatacttgacaagttttcctaggaca
ttaggacaagccgaagccctggacaaaatctgtgaagtggatctagtgatcagtttgaat
attccatttgaaacacttaaagatcgtctcagccgccgttggattcaccctcctagcgga
agggtatataacctggacttcaatccacctcatgtacatggtattgatgacgtcactggt
gaaccgttagtccagcaggaggatgataaacccgaagcagttgctgccaggctaagacag
tacaaagacgtggcaaagccagtcattgaattatacaaagggaccacaatcaaggcacct
tttgccttgctcaggaccacaaggagttggagacagggagctctactatttgaaagtgac
tag

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_6|75_aa
MGPVVSQSNEQGLEERRLCRHQPLRFPSGPGTRDRGSGRSSGRLLPQSLESMGKECGLRE
DLPPSGNTQVPEAHS

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_6|228_bp
atggggcccgtggtgagccaaagcaacgagcaggggctagaggaaaggagactgtgccga
catcagcccctgcgcttccccagcggtcccggtacccgcgaccgagggtcgggcagatcc
agtggcaggcttttgccacagtctctggagtccatgggaaaagaatgtggtctgagagaa
gatcttccaccaagtggaaacacccaagtgcctgaggcacattcatga

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_7|58_aa
MTGVPRSYVPSPLQPPDEKEEGGRKMDAAAEDLLVDPEGLTSSKKPPAVVASQSTLNF

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_7|177_bp
atgacaggagtccctagaagctatgttccttctcccctgcagcctcctgatgaaaaagaa
gaaggtggtagaaagatggatgctgctgcagaagaccttctggttgacccagaagggtta
acttcctcaaagaagcctccagctgtggttgcttcccagagcacactgaacttttaa

>gi568815597f:65048408_65326174|GENSCAN_predicted_peptide_8|346_aa
MSQPNFKFNNKHSGGFWGFKFGGSLNILPQLGEERWTPRSPEATRVPRSRFQGEPFLPIA
LVVLLARVPRKGAAESRARPGGGRRLRAAVPGPCFRNANFRVVELVPSRAELGGKVARVL
RYSPSGSEFHHGHTLGYNLLSLEAVSWSKRRLALELLSKQELPSKHTDKLALQGVSGEGK
VDYFLFSPGLPMSLLGSYRKKTSNDGYESLQLVDSNGDLSAGSGGVGGKQRVNAGAAARS
PARQPPDRASTMDSSGCADAQGSAVEGCVVEAGPVFAWRKSEIMGRNARTEALWLWAESR
PKARGQYGVCIGWPLLTGRALDSGSLLVDGGTARIIKHLRNLEDDY

>gi568815597f:65048408_65326174|GENSCAN_predicted_CDS_8|1041_bp
atgagccaaccaaattttaagttcaacaacaagcattctggaggattctggggttttaaa
ttcggaggctccttaaatattctgccgcagttgggggaggagcgatggacccctaggtct
ccggaggctacacgtgttccccgatcccgtttccagggggagcccttccttcctattgcg
ctggtcgtgctcctggcccgcgtgcccaggaagggcgcagcggagtcgcgtgcccgtccg
ggcggaggacgccgtctccgcgcggcggtgccgggcccctgcttccggaacgctaatttt
agggtggttgagctggtgccctcgcgggcagaactaggtggtaaggtggccagagtcttg
agatactctccaagtgggagtgagtttcatcatgggcatactttaggttataatttgtta
tctctcgaggcagtctcctggtcgaagagacgtctggctctggagcttctaagtaagcaa
gagcttccaagtaagcacacagataagcttgccctacagggagtgtctggtgaaggaaag
gttgattattttctcttttctccgggcttgcccatgagcctcctcgggagctaccggaaa
aagaccagcaacgatggttatgaatctttgcagctggtggacagtaacggggacttaagt
gcgggaagcggcggggttggcggcaagcagagagtgaacgccggggcagcggcgcggagt
cccgcccgacagcctccggaccgcgccagcaccatggacagctcaggctgtgcagatgcc
caggggagtgctgtggaggggtgtgtggtagaagcaggccctgtgtttgcctggaggaag
agtgagataatgggtagaaatgctagaactgaagctctgtggctctgggctgagtccagg
cctaaggcccgaggccagtacggtgtctgtatcgggtggccccttctcactgggagagcc
ctagactctggttccttgcttgttgatggaggcacagcaagaataatcaaacacctgaga
aacttggaagatgattattga