GENSCAN 1.0	Date run:  4-Nov-116	Time: 16:15:04

Sequence gi568815597f:50044956_50301175 : 256220 bp : 41.67% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2986   3123  138  2  0   55   81    69 0.531   2.41
 1.02 Intr +   9838   9939  102  2  0   94   87    69 0.935   6.63
 1.03 Term +   9982  10085  104  2  2  101   49    43 0.656  -0.84
 1.04 PlyA +  10917  10922    6                               1.05

 2.00 Prom +  14171  14210   40                              -4.65
 2.01 Init +  22828  22997  170  0  2   62   78   160 0.841  11.45
 2.02 Intr +  28170  28266   97  0  1   22   92    58 0.572  -1.31
 2.03 Intr +  30510  30582   73  2  1   92  103    81 0.971   8.06
 2.04 Intr +  33461  33630  170  0  2  116   22    79 0.071   2.84
 2.05 Term +  46308  46418  111  2  0   94   39    82 0.041   1.48
 2.06 PlyA +  47192  47197    6                               1.05

 3.06 PlyA -  48132  48127    6                               1.05
 3.05 Term -  59072  58858  215  0  2   44   38   164 0.344   3.41
 3.04 Intr -  64465  64307  159  2  0   74   44   105 0.326   3.74
 3.03 Intr -  77647  77593   55  1  1   37  110    75 0.189   2.23
 3.02 Intr -  84984  84889   96  0  0   91   87    41 0.196   3.59
 3.01 Init -  91691  91683    9  2  0   86   89     0 0.140   0.41
 3.00 Prom -  93027  92988   40                              -2.45

 4.00 Prom +  97715  97754   40                              -4.25
 4.01 Init + 100014 100242  229  2  1  107   85   173 0.811  17.48
 4.02 Intr + 100625 100799  175  0  1   67   53   109 0.481   3.38
 4.03 Intr + 119090 119135   46  2  1   72   92    52 0.004   1.49
 4.04 Intr + 119738 119795   58  1  1   50   82    55 0.002  -1.36
 4.05 Intr + 132134 132237  104  0  2  115  116    80 0.332  12.47
 4.06 Intr + 144353 144452  100  1  1   50   77    99 0.086   3.76
 4.07 Intr + 145792 145886   95  2  2   84   84    11 0.808  -0.94
 4.08 Intr + 148810 148963  154  0  1   92   42   204 0.990  14.92
 4.09 Intr + 150606 150831  226  1  1   92   96   240 0.978  21.32
 4.10 Intr + 152474 152512   39  2  0  114   76    25 0.544   0.32
 4.11 Term + 155896 156223  328  1  1  123   38   465 0.991  38.20
 4.12 PlyA + 156632 156637    6                               1.05

 5.03 PlyA - 156803 156798    6                               1.05
 5.02 Term - 163874 163656  219  2  0  108   55    73 0.385   2.06
 5.01 Init - 164387 164337   51  2  0  105   80    43 0.531   6.42
 5.00 Prom - 165315 165276   40                              -6.75

 6.00 Prom + 166665 166704   40                              -4.75
 6.01 Init + 172209 172279   71  2  2   46   79    84 0.317   3.87
 6.02 Intr + 174290 174372   83  2  2   73   94    58 0.491   3.26
 6.03 Intr + 177470 177474    5  0  2  116  119     0 0.553  -2.17
 6.04 Intr + 178161 178207   47  2  2   96   41    97 0.013   2.09
 6.05 Intr + 179865 180158  294  0  0    1   32   249 0.021   5.80
 6.06 Intr + 180478 181243  766  1  1   79   89   200 0.535   9.74
 6.07 Term + 182156 182167   12  1  0  126   33     4 0.278  -4.07
 6.08 PlyA + 182771 182776    6                               1.05

 7.00 Prom + 183501 183540   40                              -5.75
 7.01 Init + 189405 189594  190  2  1   53   65   212 0.941  14.62
 7.02 Intr + 190017 190117  101  1  2   51   45   109 0.318   1.81
 7.03 Intr + 194873 195055  183  1  0  116   30   100 0.562   6.06
 7.04 Intr + 195134 195263  130  1  1   27   56   116 0.311   1.65
 7.05 Intr + 195269 195359   91  0  1   58   51    66 0.039  -1.97
 7.06 Intr + 198739 198851  113  1  2  135   97    59 0.059  10.60
 7.07 Intr + 199645 199750  106  2  1   77   78    97 0.191   5.95
 7.08 Term + 203698 203914  217  1  1   61   48   123 0.101   1.23
 7.09 PlyA + 204361 204366    6                               1.05

 8.03 PlyA - 204603 204598    6                               1.05
 8.02 Term - 206856 206528  329  1  2   97   32   151 0.787   4.29
 8.01 Init - 208987 208882  106  1  1   59  111    87 0.869   8.54
 8.00 Prom - 211258 211219   40                              -6.55

 9.00 Prom + 221761 221800   40                              -1.25
 9.01 Init + 222209 222262   54  1  0   47  113    43 0.106   4.03
 9.02 Intr + 233820 233994  175  2  1   21   86   126 0.078   4.29
 9.03 Intr + 237337 237450  114  2  0  117   19    63 0.234   1.80
 9.04 Intr + 239762 239922  161  0  2   65   39   128 0.373   4.39
 9.05 Term + 243266 243388  123  1  0   60   55    91 0.082   0.40
 9.06 PlyA + 245995 246000    6                               1.05

10.03 PlyA - 246482 246477    6                               1.05
10.02 Term - 247672 247497  176  2  2   15   46   147 0.055   0.14
10.01 Intr - 255057 255004   54  1  0  121   78    13 0.093   1.63

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 144331 144452  122  1  2   93   77   119 0.855  10.52
S.002 Sngl - 197473 196757  717  1  0   58   43   277 0.807  16.17
S.003 Init + 198603 198699   97  2  1   72   97    61 0.912   5.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_1|114_aa
XRCQGHHRNLTRRSRPPSLREAPPRGGQGVAAATVAEPQSELESESGLTFIASSTSSLAL
LLLEGFSQYGALTGYLRQKKSYWLAVASSGCVEATSPIQSTATAFSLSMGSLKI

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_1|345_bp
ngtaggtgccagggccaccacaggaacctgactcgcaggagtcgtcctccgtctctacgc
gaagcgccccctcgaggtgggcagggggtggcggcggcgacggtggcggagccgcagagc
gagctagagagcgagagcgggctgaccttcatagcttcatcaacaagctcccttgcactc
ttgcttctggaaggattcagccaatacggagcacttacaggatatctcagacagaagaaa
agttactggctagcagtggctagcagtggctgcgtggaggccacatcacctatccaatct
acagctacagctttctctctctctatgggttctctcaagatctag

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_2|206_aa
MAVEASGNLHSCQKAKHTCPSSHDGRKKCQAKGGKAPYKTIKSPENSLAITRTAAWSLCT
DTQSPSSLMVPGSGGYISTEEETFCQSFIKSTEEEGEGEVGALALVSSFTVIAGCRLPNC
NECFTSTSLNNCASRVAHFTDVKFEAHLQGSQYQGKLGLNKGNRGLTPKPIRLQETVSGS
AFDAGSVLLKCFCWHHGTGAEFSWDQ

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_2|621_bp
atggctgtggaagcctcaggaaacttacattcgtgtcagaaggcgaagcacacatgtcct
tcttcacatgatggcaggaagaagtgccaagcaaaaggtggaaaagccccttataaaacc
atcaaatctcctgagaactcactcgctatcacaagaacagcagcatggagcctttgcaca
gacacacagtctccctctagcctcatggtaccagggagtggagggtacatctctacagag
gaagaaacattctgccagtccttcataaagagtactgaagaggaaggagaaggggaagtg
ggagctctagccctagtctcatcatttactgtcatcgcaggttgccgtctgccaaactgt
aatgagtgtttcacaagtacttcccttaacaattgtgctagcagagtggcccattttaca
gatgtcaaattcgaagctcacttacaaggtagtcagtaccaggggaaactgggactgaac
aaagggaacagaggtctgactccaaagccaatacgcttacaggaaaccgtaagtggatct
gcttttgatgctggcagcgtcttactaaaatgcttttgctggcatcatggaacaggagca
gaattcagctgggaccaataa

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_3|177_aa
MSQGCCEKNNKSEGTWFRAQYTVSTQYMFIFLVQKELQKALNGFGTDGSAHIAGKTDNDL
LKMTILYPHCFSIKGPTRTLYTKEIVNVGTKQQHRTKLLCKHKTGQGYPVMWLNRPVPYD
CSRLIFSRLGQFQSIHVQQHKTPSQTEPLSSHQSLRTQLQTFSSCSGCLDYLFLPLN

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_3|534_bp
atgtctcagggttgctgtgagaaaaacaacaaatctgaaggcacctggttcagagctcag
tacacagtaagcactcagtacatgttcattttccttgtccaaaaggagctccaaaaggca
ctgaatggatttgggacagatggatctgcccacattgcagggaaaactgacaacgacttg
ctaaaaatgacaatcttatatccccattgcttttcaataaaaggacctacccgcactctc
tacacaaaagagatagtaaatgtaggaaccaaacagcagcacagaactaaactcttgtgc
aagcataagactggtcaaggctatccagtgatgtggctaaacagacctgttccatatgac
tgtagccggctcattttcagtcgattagggcagttccagagcattcacgtgcaacagcac
aaaactccaagtcagactgagcctctctcttcacaccagtccctccgaacacagctgcag
accttttcctcctgttccggctgtctggattacctcttcttgcccctcaattga

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_4|517_aa
MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFG
SIGEIESCKLVRDKITVFFHVPETSVLKGATVDVWTVDTTALVPGEKQALRIADYSGIQL
LCSRREMLNEDLHLSKTDIKIPASEGCKDYVFHMCLMGSGSAYQLPMDMGQSLGYGFVNY
IDPKDAEKAINTLNGLRLQTKTIKVKGVVGAAWEEAALSPRPDAPSVMNDNACFTHLGFT
LFPLYPSSGCAELMGVKVMTIHYAFIGCQVSYARPSSASIRDANLYVSGLPKTMTQKELE
QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF
ANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTS
LVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV
TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_4|1554_bp
atggagcctcaggtgtcaaatggtccgacatccaatacaagcaatggaccctccagcaac
aacagaaactgtccttctcccatgcaaacaggggcaaccacagatgacagcaaaaccaac
ctcatcgtcaactatttaccccagaatatgacccaagaagaattcaggagtctcttcggg
agcattggtgaaatagaatcctgcaaacttgtgagagacaaaattacagtgttcttccat
gtgcctgaaacaagtgttttaaagggggccactgtggatgtgtggacagttgacacaact
gcccttgtccctggggagaaacaggccctaaggatagcagattattctggaatacaacta
ctctgcagtaggagggaaatgcttaatgaagatctgcatttgagtaaaacagatatcaaa
atacctgcttcagagggttgtaaagattatgtctttcacatgtgtcttatgggatcgggt
tccgcttaccaacttcctatggacatgggacagagtttagggtatggatttgttaactat
attgatccaaaggatgcagagaaagccatcaacactttaaatggactcagactccagacc
aaaaccataaaggtaaagggagttgtgggtgctgcatgggaagaggcagccctcagccct
cgtcctgatgccccatctgtgatgaatgacaacgcctgctttacccaccttgggttcacc
ctgttccctctgtaccctagctctggctgtgcagaactaatgggagttaaggtcatgact
atccattatgcatttattgggtgccaggtctcatatgcccgtccgagctctgcctcaatc
agggatgctaacctctatgttagcggccttcccaaaaccatgacccagaaggaactggag
caacttttctcgcaatacggccgtatcatcacctcacgaatcctggttgatcaagtcaca
ggagtgtccagaggggtgggattcatccgctttgataagaggattgaggcagaagaagcc
atcaaagggctgaatggccagaagcccagcggtgctacggaaccgattactgtgaagttt
gccaacaaccccagccagaagtccagccaggccctgctctcccagctctaccagtccccc
aaccggcgctacccaggtccacttcaccaccaggctcagaggttcaggctggacaatttg
cttaatatggcctatggcgtaaagaggttctccccaattaccattgatggaatgacaagc
cttgtgggaatgaacatccctggtcacacaggaactgggtggtgcatctttgtctacaac
ctgtcccccgattccgatgagagtgtcctctggcagctctttggcccctttggagcagtg
aacaacgtaaaggtgattcgtgacttcaacaccaacaagtgcaagggattcggctttgtc
accatgaccaactatgatgaggcggccatggccatcgccagcctcaacgggtaccgcctg
ggagacagagtgttgcaagtttcctttaaaaccaacaaagcccacaagtcctga

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_5|89_aa
MPDSSVPMEAACSSTNMPRGVGLGDICPLPDIYERRALTSLLKSLLVLCFPKDVSCLSLH
DQPFSSYSCALPFHCCPPKLLSVASTPLP

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_5|270_bp
atgcctgattcctctgtccccatggaggctgcatgcagcagtacaaatatgccaagagga
gtagggcttggagatatttgccctttaccagatatttatgaacgaagggccctcacttcc
ttgctcaaaagccttctggtactctgctttcctaaagatgtttcctgcctcagcctgcat
gaccaacccttttcctcttattcctgtgctctccctttccactgctgcccacctaagctc
cttagtgtggcctccactcctttaccctga

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_6|425_aa
MSLMGSRKQQMASVAKEPREKGESVSSGQKPMEMMSWEKHEGVHKYFGGGKGLVRTFPEI
EDVTSSHIVDWNSLEGSEKDKNMWKSLELPRDSLNGCDQNADDDMNNEVQAEVVSGGDEE
LTENWELTGNLLGSKVHFCYALAKRLVALCPCSRHLWSFELERDDLGPGGLEGKNGSVGQ
AQGPAALCSLRTCMAPCIPNAPAQPWLKGAKIKLRPLLQRVQASSLGGFHMVLGLWVCKR
QELRVGVLCLDFRGCMETSGYPGRSLLQGQSPHGENSTRAMQRGNMGLDPPHRVPTGTLP
RGAVRRGPPFSRPPNGRSTNSLHHTSRKATGTQCQALKADTGDVPCRATEVELPKALGAH
PLHLHALDVRHGVKGDYFRTLRFNDYPAGFWTCMGPIAPLFWPISSFWNGRIYPMPAPPL
YLASG

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_6|1278_bp
atgagcttaatgggttctaggaaacaacagatggccagcgtggcaaaagaaccgagagag
aagggagaaagtgtaagttctggtcagaaacccatggagatgatgtcttgggaaaagcat
gagggagttcacaaatactttggaggaggcaaaggactggtgaggacgttcccggagatt
gaagatgtgacaagttcccacatcgtagattggaacagtctggagggctcagaaaaagat
aagaacatgtggaaaagtttggaacttcctagagactcattgaatggttgtgaccaaaat
gctgatgatgacatgaacaatgaagttcaggctgaggtggtttcaggtggagatgaggaa
cttactgagaactgggaacttactgggaacttactgggaagtaaagttcacttttgctat
gctttagcaaagagactggtggcactgtgcccctgctctagacatctgtggagctttgaa
cttgagagagatgatttagggccaggaggcctagaagggaaaaatggttctgtgggccag
gcccagggccctgctgctctgtgcagcctcaggacatgcatggcaccctgcatcccaaat
gctccagctcagccatggctaaaaggggccaagataaagctcaggccattgcttcagagg
gtgcaagcctcaagccttggtggcttccacatggtgttaggcctgtgggtgtgcaaaagg
caagagttgagggttggagtcctctgcctagatttcagaggatgtatggaaacgtctgga
tatccaggcagaagtctgctacagggtcagagccctcatggagagaactctactagggca
atgcagaggggaaatatggggttggatcccccacacagagtccccactggaacactgcct
agaggagctgtgagaagagggccaccattctccagacccccaaatggtagatccactaac
agcttgcaccatacgtctagaaaagccacaggcactcaatgccaggccctgaaagcagac
acaggggatgtaccctgcagagccacagaagtggagctgcccaaggccttgggagcccac
cccttgcatctgcatgccctggatgtgagacatggagtcaaaggagattatttcagaact
ttaagatttaatgactaccctgctgggttttggacttgcatggggcctatagcccctttg
ttttggccaatttcttccttttggaatggaagaatttacccaatgcctgcacccccattg
tatcttgcttctggctag

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_7|376_aa
MWESLELPGDLESSEDRKMQESLELPRDLLNGFDQNAVSDMDNKVQAEVVPDRDEELVGN
WSKATPAMAKRNQRTAQTRASEDASPKTWQLTCGVQPIFIFKAQKCKDKQVESSPRGAQI
LMGETSCQQRMTTHWYRHRALIYTPVAQISAMTEGSTVKSGKKRCEAGGVGCSKGAQTQN
QESQVQSPPSCVTRCDSCPPFCRIIIPAEQGGHRFNGNTESTWCKVGVKEIRFETPRHKK
KPSLTFFFPFQTEQVPELVKHKCKIMKNNRSLPGEPTTTSGASSYDYAFRCPSLPSASEH
LEGRVCQNQNSRAHVSQGLTQGPSMGLLRKGVMILSQPLTDATAHKGWKGHWKYTGPTLE
DVNCGGICLFWSPYTG

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_7|1131_bp
atgtgggaaagtttggaacttcctggagacttggaaagctcagaagacaggaagatgcag
gaaagtttggaacttcctagagacttgttgaatggctttgatcaaaatgctgttagtgat
atggacaataaagtccaggctgaggtggtcccagatagagatgaggaacttgttgggaac
tggagtaaagccactccagccatggctaaaaggaaccaacgcacagctcagaccagggct
tcagaagatgcaagccctaagacttggcagcttacatgtggtgttcagcctatatttatt
ttcaaggcccaaaaatgcaaagataaacaagtagagtcctcaccccgaggagctcagatt
ctaatgggagagacatcatgtcaacagaggatgacaacccactggtacagacacagagca
ctgatctacactcccgtagcacagatcagtgccatgacagagggaagcacagtgaagagt
ggaaagaagcggtgtgaagcagggggagtgggatgcagtaaaggagcacagacacagaat
caggagagccaagttcagagccctcccagctgtgtgacccgatgtgactcatgtcccccc
ttctgcagaataataatacctgctgaacaaggtggtcacaggttcaatggcaatacagaa
agtacgtggtgtaaagtaggtgtcaaggaaatcagatttgagacaccacgacacaagaag
aaaccatccctgactttcttcttcccttttcaaactgaacaagttcctgaacttgtcaaa
cataaatgcaaaattatgaaaaacaatcgaagtcttcctggagagcccactaccacctct
ggtgcctcaagttatgattacgccttcagatgtccatctctcccatctgcaagtgagcac
ctggaaggcagggtatgtcagaaccaaaattctcgggctcatgtcagtcaaggcctcacc
cagggaccctccatgggccttctcaggaaaggagtaatgattctcagccagcccctcaca
gatgccacagcacataaaggttggaaaggccattggaaatacacgggccccacactagag
gatgtgaactgtggaggcatttgcctcttctggtctccttacacaggctag

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_8|144_aa
MESLAQGHPTELVPFALPKLLLSGFGKGFLSLRETESQVPTVFTGVWGKEAEVGKYGLTS
IPRKPGAGLKGKRGSKQHGQHGQTEASVCPEDPSHRFLQSCGRLMKATGLNTPPLPVGLL
FASPDSCREKIRAGLGVFRPGFKS

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_8|435_bp
atggagtcacttgcccagggtcatccaactgagctggtgccctttgcactccccaagctg
cttctctctgggtttggtaaaggttttttgtctttacgagaaacagaaagccaggttccc
actgtatttacaggggtctggggaaaggaagcagaagtggggaagtacggcttgacttca
atccccagaaagccaggggctgggctgaaggggaaaaggggaagtaaacagcatgggcag
catggacaaacagaggcctcagtgtgccctgaggacccctcccacagattcctccaatct
tgtggaaggctgatgaaagcaactggtctgaacacccctcctctgccagtgggtcttctc
tttgcctctcctgacagctgcagggagaagatacgtgctggacttggcgtcttcaggcct
gggttcaagtcctag

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_9|208_aa
MLSEDSMLEERDEFCFGKCNISGKFQQVGWALECDHLHKASLGSAADAVIAATKGPERMT
QSPKFGGQGHLRGVKEGPQRIGRCLPTLIREIFFTRLLIQMFTSSGNTLTNTTRKWEILW
GTDLHLRHLWVSGASHRILHEYKLRDFLLKWMTKRASIQKRLQRHEKNPSPELLAFLRIQ
TLLLLSGVTNTLSLEDFTPSRDSGSSLL

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_9|627_bp
atgctatctgaagacagcatgttggaggaaagagatgaattctgttttggaaagtgcaat
atttctggaaagttccaacaagtgggctgggcactggagtgtgaccatctccataaagct
tccttaggctctgcggcagacgctgtcatagccgccacaaaaggcccagagagaatgacg
cagtctccaaaatttgggggccaagggcacctcaggggtgtcaaagaaggccctcagcgg
attggacgatgcctgcccacactgataagggagatattttttactcgtctactgattcaa
atgtttacgtcttctggaaacaccctcacaaacacaacaagaaagtgggagattctctgg
ggcacagacctacatctgaggcatctgtgggtctctggggcctcgcacagaatcctgcat
gagtacaagctcagggactttttgctgaagtggatgacaaagagagcaagcatccaaaaa
cgactgcagaggcatgagaagaacccctcccctgaactgctggcatttctcaggatccag
acactgcttctcctttctggtgtcaccaacacactctccttggaggatttcacaccttcc
agggattcaggttccagcctcctctga

>gi568815597f:50044956_50301175|GENSCAN_predicted_peptide_10|76_aa
XTLESQTVMTCLMCFLAHDEETEAEMQGIDFVPFDTASEWQQQDPWPRTHSVAQPQTTAF
RVHALQLFSDGSNDKC

>gi568815597f:50044956_50301175|GENSCAN_predicted_CDS_10|231_bp
ngaaccctggaatcacagactgtcatgacttgtctaatgtgctttctggcacatgatgag
gaaactgaggctgagatgcaggggattgactttgtcccctttgacacagccagtgagtgg
cagcagcaggacccctggcccagaactcattccgtggctcagcctcaaaccacggccttc
cgagtccatgctttgcagctgttctctgatgggtcgaatgacaaatgctga