GENSCAN 1.0	Date run:  6-Nov-116	Time: 03:58:03

Sequence gi568815597f:235280050_235548759 : 268710 bp : 43.02% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    436    538  103  0  1   60   80    67 0.619   3.63
 1.02 Term +  16092  16288  197  1  2  -43   39   284 0.694   7.97
 1.03 PlyA +  16336  16341    6                               1.05

 2.05 PlyA -  16425  16420    6                               1.05
 2.04 Term -  46919  46867   53  0  2  142   49    28 0.663   1.89
 2.03 Intr -  47912  47720  193  2  1   90   97   149 0.887  15.07
 2.02 Intr -  48749  48695   55  1  1   93   26    74 0.607   0.68
 2.01 Init -  52223  52186   38  2  2   86   76    19 0.350  -0.02
 2.00 Prom -  52394  52355   40                              -5.66

 3.00 Prom +  54016  54055   40                              -4.16
 3.01 Init +  61983  62694  712  2  1   52   60   271 0.009  15.77
 3.02 Intr +  82371  82473  103  1  1   83   36    61 0.007  -0.37
 3.03 Intr +  87330  87455  126  0  0   84   99    45 0.068   4.99
 3.04 Intr +  99970 100100  131  1  2   83  115   115 0.425  14.04
 3.05 Term + 100175 100188   14  0  2   77   43    17 0.599  -5.54
 3.06 PlyA + 102217 102222    6                               1.05

 4.04 PlyA - 103014 103009    6                               1.05
 4.03 Term - 104593 103968  626  2  2   46   42   287 0.716  14.45
 4.02 Intr - 105223 104930  294  2  0   39   20   166 0.053   1.88
 4.01 Init - 106870 106570  301  1  1   88   -8   241 0.133  11.91
 4.00 Prom - 107597 107558   40                              -7.76

 5.00 Prom + 116446 116485   40                              -3.76
 5.01 Init + 129155 129195   41  1  2   85   62    39 0.704   0.66
 5.02 Intr + 134384 134569  186  2  0   93  115   160 0.978  18.00
 5.03 Term + 139424 139583  160  2  1   48   32    97 0.235  -2.49
 5.04 PlyA + 145182 145187    6                               1.05

 6.00 Prom + 150996 151035   40                              -4.86
 6.01 Init + 152936 153122  187  1  1   85   92   284 0.967  27.72
 6.02 Intr + 154010 154162  153  0  0   68   66    56 0.509   1.44
 6.03 Intr + 156495 156559   65  1  2  101   71    51 0.702   3.14
 6.04 Intr + 157273 157425  153  0  0   75   83   181 0.775  16.57
 6.05 Term + 161765 161818   54  1  0   88   48    39 0.406  -2.54
 6.06 PlyA + 163795 163800    6                               1.05

 7.15 PlyA - 164186 164181    6                               1.05
 7.14 Term - 166035 165969   67  2  1   46   49    84 0.229  -2.29
 7.13 Intr - 170291 170191  101  2  2   80   62    74 0.290   2.91
 7.12 Intr - 173097 173041   57  0  0   24  111    70 0.774   1.98
 7.11 Intr - 174260 174107  154  1  1   36   91   112 0.703   6.37
 7.10 Intr - 175635 175510  126  2  0  104  106    44 0.939   7.59
 7.09 Intr - 178737 178554  184  1  1   72   78   130 0.790   9.25
 7.08 Intr - 185665 185587   79  1  1   97  110   -16 0.590   0.62
 7.07 Intr - 190911 190801  111  0  0   48   98    53 0.650   2.88
 7.06 Intr - 200100 200005   96  0  0   64   77   131 0.895   9.81
 7.05 Intr - 204466 204273  194  2  2   47   69   251 0.991  18.31
 7.04 Intr - 209219 209119  101  1  2   40  111    55 0.861   2.75
 7.03 Intr - 214779 214632  148  1  1  112   90    57 0.897   7.59
 7.02 Intr - 223812 223639  174  1  0   73   18    87 0.459   0.11
 7.01 Init - 224203 224092  112  1  1   26   94   265 0.986  19.28
 7.00 Prom - 238078 238039   40                              -5.46

 8.00 Prom + 244477 244516   40                              -3.96
 8.01 Init + 251373 251393   21  2  0   99   50    17 0.526  -2.27
 8.02 Term + 253887 253955   69  2  0  119   39   111 0.921   7.24
 8.03 PlyA + 254329 254334    6                               1.05

 9.03 PlyA - 254341 254336    6                               1.05
 9.02 Term - 258768 258578  191  1  2   41   52   137 0.269   3.01
 9.01 Intr - 264401 264370   32  1  2  116   74    16 0.175   0.77

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  61983  62723  741  2  0   52   35   309 0.897  18.21


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_1|99_aa
MISHNSGPEQLTGFLPLRSSPRKRLLPEPKMAASEQKVNNILVFTVDVKANKYQIKQAKK
KLCGTDMANINTLIRPDGKKAHVLPVPDYDDVANKIGII

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_1|300_bp
atgatctcccacaactcaggtcctgagcagctcactgggttcctgcctctccgctcctcg
ccacgcaaacggctcctgccagaacccaagatggcagcttcagaacagaaagtcaacaac
attcttgtgttcactgtggatgtcaaggccaacaaataccagatcaaacaggctaagaaa
aagctctgtggcactgacatggccaatatcaacaccctgatcaggcctgatggaaagaag
gcccatgttctaccggttcctgactatgatgacgttgccaacaaaattgggatcatctaa

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_2|112_aa
MECGMIDNGDSKGRRHCRSQFNDDITTFTPPGARAAAKQRYQSPPREEEEPEPLPQQPLD
PPPFFPISPPGLLVLGGRRREGTLDVPGSDLASEEGAAEPGVLEDTLVPESS

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_2|339_bp
atggagtgtggaatgatagacaatggagattccaaaggccgccgccactgccgctcacag
ttcaacgatgatatcacgactttcacgccgccgggagcccgagcggccgccaaacaaagg
taccagtcgccgccgcgggaggaggaggagccggagcctctgcctcagcagccgctggac
ccgccgcccttcttccccatctctcccccgggcctgctggttttgggggggagaaggaga
gaggggactctggacgtgccagggtcagatctcgcctccgaggaaggtgcagctgaacct
ggtgttttagaggataccttggtcccagagtcatcatga

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_3|361_aa
MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKL
FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLK
PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNIL
RQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLRLP
LSTRQIKQELAEEYETTKSPVPPAYSLQLLLSSRTSLRWRRDFLQHFRPEPQASLLGSWL
EGLLLGTPGVSAGRSHILDSGYIIMSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAAVS
V

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_3|1086_bp
atgttgcataatgccagtttactcatcgatgatattgaagacaactcaaaactccgacgt
ggctttccagtggcccacagcatctatggaatcccatctgtcatcaattctgccaattac
gtgtatttccttggcttggagaaagtcttaacccttgatcacccagatgcagtgaagctt
tttacccgccagcttttggaactccatcagggacaaggcctagatatttactggagggat
aattacacttgtcccactgaagaagaatataaagctatggtgctgcagaaaacaggtgga
ctgtttggattagcagtaggtctcatgcagttgttctctgattacaaagaagatttaaaa
ccgctacttaatacacttgggctctttttccaaattagggatgattatgctaatctacac
tccaaagaatatagtgaaaacaaaagtttttgtgaagatctgacagagggaaagttctca
tttcctactattcatgctatttggtcaaggcctgaaagcacccaggtgcagaatatcttg
cgccagagaacagaaaacatagatataaaaaaatactgtgtacattatcttgaggatgta
ggttcttttgaatacactcgtaatacccttaaagagcttgaagctaaagcctataaacag
attgatgcacgtggtgggaaccctgagctagtagccttagtaaaacacttaaggttaccc
ctaagcaccagacagatcaaacaggagcttgctgaggagtatgagaccactaagagtcca
gtgcccccagcctacagcctccaactcctcctaagcagccgtacctcactccggtggagg
cgggacttcctacagcacttccggccagagcctcaagcttcgctgctgggcagttggctg
gaggggctgctgctgggaacacctggagtctccgcgggcagatctcatattttggattct
ggatatattataatgagtgacactttgacagcggatgtcattggtcgaagagttgaagtt
aatggagaacatgcaacagtacgttttgctggtgttgtccctcccgtggcagctgtttct
gtgtaa

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_4|406_aa
MGKKQSRKTGNSKKQSASPPPKEHSSSPATEQSWTENDFDKLREEGFRRSNYSELQEEIQ
TKGKEVKNFEKNLDECITRITNTEKCLKELMELKAKAQELPPHHTYSKIDHIVGSKALLS
KCKRSDIITNCLSDHSAIKLEFRIKKLTQNRSTTWKLNNLLLNDYWVHNEMKTEIKMFFE
TNENKDTTYQNLWDNIQSKIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVE
SLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEEQVPFLLKLFQSIEKEGILPN
SFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFI
PGMQGWFNICKSINVIQHINRTKDKNHMIISIDAEKAFDKIQQPSC

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_4|1221_bp
atggggaaaaaacagagcagaaaaactggaaactctaaaaagcagagcgcctctcctcct
ccaaaggaacacagctcctcaccagcaacggaacaaagctggacagagaatgactttgac
aaattgagagaagaaggcttcagacgatcaaactactccgagctacaggaggaaattcaa
accaaaggcaaagaagttaaaaactttgaaaaaaatttagacgaatgtataactagaata
accaatacagagaagtgcttaaaggagctgatggagctgaaagccaaggctcaagaacta
ccaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagc
aaatgtaaaagatcagacattataacaaactgtctctcagaccacagtgcaatcaaacta
gaattcaggattaagaaactcactcaaaaccgctcaactacatggaaactgaacaacctg
ctcctgaatgactactgggtacataatgaaatgaagacagaaataaagatgttctttgaa
accaacgagaacaaagacacaacataccagaatctctgggacaacattcaaagcaaaata
caaactaccatcagagaatactacaaacacctctacgcaaataaactagaaaatctagaa
gaaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagttgaa
tctctgaatagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaacc
aaaaagagtccaggaccagatggattcacagccgaattctaccagaggtacaaggaggaa
caggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaac
tcattttatgaggccagcatcatcctgataccaaagccaggcagagacacaaccaaaaaa
gagaattttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactg
gcaaaccgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatc
cctgggatgcaaggctggttcaatatatgcaaatcaataaatgtaatccagcatataaac
agaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaa
attcaacaaccttcatgctaa

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_5|128_aa
MGQDDDFTSSMCNWHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGN
KPVETIGFDSIMKQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPSILFTESLLLESDYG
FYTCARDC

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_5|387_bp
atgggtcaggatgatgattttaccagcagcatgtgtaattggcacccgacaggaggatcc
tttattcgtccgaacaaggtaaattttggaacagactttcttactgcaattaagaaccgc
tatgtgttagaagatggaccagaggaagatagaaaagagcaaattgttacaattggaaat
aaacctgtggagactatcggttttgactctattatgaaacagcaaagtcagctgagcaag
ttgcaagaagtttctctgaggaactgtgcagtaagttgtgctggtgaaaaaggaggagtt
gctgaagcatgtcctagtatccttttcaccgagagcttgttattggaatctgactatgga
ttttatacctgtgccagagactgctaa

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_6|203_aa
MQKDASKFVDLCVLQKCSTSNCIISAKDHTSMRMNVAKASEVTGRFNSQFKTCAICRTVC
RMGLKQSYELSVRHLFAETVTELNSCGGSYEHPGRNSQQRPPEPEPSFSSRCCGCKTSMF
PSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLK
TLNKCENMVHLKIGNSKHSNHLC

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_6|612_bp
atgcagaaagacgccagcaagttcgtggatctgtgcgtgctgcagaaatgctccaccagc
aactgcatcatcagtgccaaggaccacacatccatgcggatgaacgtggccaaggccagt
gaggtcacgggcaggtttaacagccagtttaaaacctgtgctatctgcaggactgtttgc
aggatgggcctgaaacagtcttatgaactgtccgtgaggcacttgtttgctgaaacagta
actgagctgaattcttgtggtggttcctatgaacacccgggaagaaacagccagcagagg
ccgcctgagcctgaaccgagtttctcttccaggtgctgcgggtgcaaaacgtccatgttc
ccatccttgaagtacctggtagtaaacgacaatcagatatcacaatggtcgtttttcaat
gagctagagaagttaccaagtctacgggctttgtcctgcctaagaaaccccctgaccaaa
gaggacaaagaagcagagacggcgcgactactcattatcgccagcattggccagctgaag
acgctgaacaaatgtgagaatatggtgcacctgaagattgggaactcaaaacacagcaac
cacttatgctga

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_7|567_aa
MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGLVSDVRRRPFARERNLVCPSAA
SAFCFGSSGSEVVFFPPKLLVFLGQDWGFSAVDNVYQLALFPQWKSTHYDVVVGVLSARN
NHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVL
NQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQA
EQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVT
VNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHIRN
LHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCYID
LEAVFNRIVQKNLDGPNFWWGKLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISKDIVK
WLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWELTEL
WKLKERHTLPSMAATCGTEHLESGEYD

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_7|1704_bp
atgcgaaactggctggtgctgctgtgcccgtgtgtgctcggggccgcgctgcacctctgg
ctgcggctgcgctccccgccgcccgcctgcgcctccggggccggccctgcaggcctggtt
agtgatgtccgacgccgcccgttcgcccgggagcggaacctcgtgtgcccttcagccgcc
agcgctttctgctttgggagctctggctctgaagttgttttcttcccccccaagttgttg
gtctttctcggtcaagactggggttttagtgccgtggataatgtgtatcagttggcctta
tttcctcagtggaaatctactcactatgatgtggtagttggcgtgttgtcagctcgcaat
aaccatgaacttcgaaacgtgataagaagcacctggatgagacatttgctacagcatccc
acattaagtcaacgtgtgcttgtgaagttcataataggtgctcatggctgtgaagtgcct
gtggaagacagggaggatccttattcctgtaaactactcaacatcacaaatccagttttg
aatcaggaaattgaagcgttcagtctgtccgaagacacttcatcggggctgcctgaggat
cgagttgtcagcgtgagtttccgagttctctaccccatcgttattaccagtcttggagtg
ttctacgatgccaatgatgtgggtttccagaggaacatcactgtcaaactttatcaggca
gaacaagaggaggccctcttcattgctcgcttcagtcctccaagctgtggtgtgcaggtg
aacaagctgtggtacaagcccgtggaacaattcatcttaccagagagctttgaaggtaca
atcgtgtgggagagccaagacctccacggccttgtgtcaagaaatctccacaaagtgaca
gtgaatgatggagggggagttctcagagtcattacagctggggagggtgcattgcctcat
gaattcttggaaggtgtggagggagttgcaggtggttttatatatactattcaggaaggt
gatgctctcttacacaaccttcattctcgccctcaaagacttattgatcatataaggaat
ctccatgaggaagatgccttactgaaggaggaaagcagcatctatgatgatattgttttt
gtggatgttgtcgacacttatcgtaatgttcctgcaaaattattgaacttctatagatgg
actgtggaaacaacgagcttcaatttgttgctgaagacagatgatgactgttacatagac
ctcgaagctgtatttaataggattgtccaaaagaatctggatgggcctaatttttggtgg
ggaaaactgaattgggcagttgaccgaaccggaaagtggcaggagttggagtacccgagc
cccgcttaccctgcctttgcatgtgggtcaggatatgtgatctccaaggacatcgtcaag
tggctggcaagcaactcggggaggttaaagacctatcagggtgaagatgtaagcatgggc
atctggatggctgccataggacctaaaagataccaggacagtctgtggctgtgtgagaag
acctgtgagacaggaatgctgtcttctcctcagtattctccgtgggaactgacggaactg
tggaaactgaaggaacgccatacactgcccagtatggcagccacatgtggtactgagcac
ctggaaagcggcgagtatgactga

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_8|29_aa
MGLGPGPPTQCEDEDEDEDFYDDPLSLNE

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_8|90_bp
atggggctggggcctggccctcctactcaatgtgaagatgaagatgaggatgaagacttt
tatgatgatccactttcacttaatgaatag

>gi568815597f:235280050_235548759|GENSCAN_predicted_peptide_9|74_aa
XPQTHTGPRPGASLIHNLSEEQDIRKIGGLFKTLPLTSSSHFISSLTTYRYAFLTGFYSK
DLIIEPANTSYTNA

>gi568815597f:235280050_235548759|GENSCAN_predicted_CDS_9|225_bp
nngccacagacccatactggtccgcggcctggggcgtccctcatccataacctcagtgaa
gaacaagacatccgaaaaataggagggctattcaagactctacccctcacttcctcctcc
cattttatcagcagcctcacaacttacaggtatgccttcctcacaggcttttactccaaa
gacctcattattgaacctgcaaacacatcatacaccaatgcctga