GENSCAN 1.0	Date run:  6-Nov-116	Time: 05:23:51

Sequence gi568815596r:75564669_75810855 : 246187 bp : 39.36% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   2181   2176    6                               1.05
 1.04 Term -   3218   3047  172  1  1   76   38   118 0.400   1.92
 1.03 Intr -   5331   5204  128  0  2   24   75    84 0.226  -0.74
 1.02 Intr -   6482   6276  207  2  0  101   84   140 0.745  13.25
 1.01 Init -  15346  15224  123  1  0   94   59    43 0.307   2.22
 1.00 Prom -  26427  26388   40                              -3.75

 2.09 PlyA -  27821  27816    6                               1.05
 2.08 Term -  33154  32890  265  0  1   67   39   266 0.787  13.60
 2.07 Intr -  33956  33695  262  0  1   64   -3   216 0.356   5.72
 2.06 Intr -  34410  34268  143  2  2    4   72    64 0.244  -4.52
 2.05 Intr -  36081  35741  341  0  2  116   62   205 0.538  14.05
 2.04 Intr -  44180  44054  127  1  1  143   89     6 0.004   5.96
 2.03 Intr -  44713  44532  182  1  2   22    2   217 0.001   4.24
 2.02 Intr -  51011  50824  188  0  2   56   44    98 0.001   0.69
 2.01 Init -  56896  56824   73  1  1  100   82    71 0.182   8.98
 2.00 Prom -  64558  64519   40                              -6.55

 3.00 Prom +  68474  68513   40                              -5.45
 3.01 Init +  82140  82242  103  2  1   91   92    96 0.699   9.70
 3.02 Intr +  82434  82551  118  1  1  121   94   358 0.977  38.30
 3.03 Intr +  87474  87592  119  0  2  109   57    54 0.998   3.59
 3.04 Intr +  87855  87989  135  1  0   70  115   153 0.949  15.82
 3.05 Intr +  90068  90249  182  0  2   72   64   226 0.945  17.27
 3.06 Term +  90396  90617  222  2  0   83   37   197 0.986  10.03
 3.07 PlyA +  90759  90764    6                               1.05

 4.00 Prom + 115381 115420   40                              -5.45
 4.01 Init + 117815 118042  228  1  0   88   57   211 0.436  16.42
 4.02 Term + 118748 118891  144  1  0   46   39   195 0.458   7.33
 4.03 PlyA + 118988 118993    6                               1.05

 5.14 PlyA - 120099 120094    6                               1.05
 5.13 Term - 123309 123145  165  0  0   29   37   145 0.667   0.43
 5.12 Intr - 124557 124358  200  1  2   80   63   105 0.907   5.35
 5.11 Intr - 125413 125301  113  0  2   26   86    98 0.971   2.50
 5.10 Intr - 126051 125970   82  1  1   49   77   106 0.948   3.38
 5.09 Intr - 127432 127309  124  1  1   55   37    79 0.855  -1.26
 5.08 Intr - 129759 129573  187  2  1   66   83   114 0.979   7.47
 5.07 Intr - 131647 131532  116  1  2   90   71    69 0.975   3.73
 5.06 Intr - 136619 136522   98  0  2   59   74    95 0.975   4.01
 5.05 Intr - 137755 137612  144  2  0   87   44   166 0.416  11.43
 5.04 Intr - 141983 141855  129  0  0   31   92   121 0.801   6.55
 5.03 Intr - 146176 145592  585  2  0   30  -40   494 0.803  22.49
 5.02 Intr - 147374 147099  276  0  0   69   68   307 0.974  23.37
 5.01 Init - 148167 148065  103  0  1   60   68   120 0.649   5.66
 5.00 Prom - 167541 167502   40                              -4.75

 6.03 PlyA - 167685 167680    6                               1.05
 6.02 Term - 169256 169063  194  0  2   21   40   166 0.107   1.70
 6.01 Init - 174460 174388   73  1  1   77   87    49 0.417   5.00
 6.00 Prom - 196877 196838   40                              -1.45

 7.03 PlyA - 198355 198350    6                               1.05
 7.02 Term - 200452 200247  206  2  2   92   49   130 0.908   6.05
 7.01 Init - 202640 202550   91  2  1   64   63    68 0.366   2.60
 7.00 Prom - 204768 204729   40                              -5.55

 8.00 Prom + 212280 212319   40                              -6.25
 8.01 Init + 214795 214905  111  0  0   36   91    87 0.655   4.06
 8.02 Intr + 223505 223637  133  1  1   61   86   163 0.406  12.70
 8.03 Intr + 235408 235519  112  2  1   33   90   121 0.234   5.32
 8.04 Term + 243042 243132   91  0  1   86   52    75 0.168  -0.09
 8.05 PlyA + 243865 243870    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  44527  44673  147  2  0   55  109   154 0.917  13.49
S.002 Init -  72953  72891   63  2  0   54   66    79 0.868   3.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_1|209_aa
MSTARLLPTFTQGPRALQSACGKCCQPGSLPSEQEAPLWLRDLAATQLMTCNFYLPPPPN
HAFSFLTGWAKIKEIKIIHEKKWVSAAAANTLRQQPKSAAQVSSSNKLGHVECANLRQRD
EQEPIDLTGLGYGRRNRVQSSTVKMCHRCPGLRIKILDSSFTSTVDPKLHQMCSDTGDRL
VAGRGHWFKQWKSLRFGHWGHEHIAIQLV

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_1|630_bp
atgagtactgccagactactgccaacgttcactcaaggcccaagggctcttcagtcagct
tgtggtaaatgctgccagcctgggtctctcccctcagagcaggaggctcctctgtggctc
agggatttagctgccactcagctcatgacctgtaacttctatctcccgccccctcccaac
cacgctttcagttttctcacaggctgggcaaaaattaaagagattaaaatcatccatgag
aaaaagtgggttagtgcagctgctgcaaataccctgcgtcagcagcccaagtcagcagct
caagtcagcagctcaaataaacttggccatgtggagtgtgcaaacctgagacagagagat
gaacaagaacctattgacctcacaggactcggatatgggagacgtaacagggtgcagagc
tctacagtgaaaatgtgtcacagatgcccaggactcaggatcaaaatcttagattcttca
tttacatctacagtagatcccaaactccatcagatgtgttcagacacaggagaccgactg
gttgctggtcgcggacactggtttaagcaatggaaatcactccgatttgggcactgggga
catgaacacattgccatccagttggtttga

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_2|526_aa
MKNLGSLGGALDFTWHHVEAEPLESNSPEQGQEEETCGVDSRLDVHICPSCEDHYVSTLF
FAAQNICLILTATPGMGAFMPFLMMRPQVVIRKPASPRDSPVLEGPGVCENRDALSAAAR
RRHTVAPLDGPTVFHKAAFVRIPAQPPRLAPLMEARLVFPLVYKPKKLALFLPGKGTTDL
IFKSFASTPLQALVRPAATSQSQQGYYKMLGPAASLNSALQYSIDKANKASLFVLRMSSE
MSWQFCSNTEELHFSASLNYSCMSIQVLSTEYTSSPSYPIPPTLRQSVKPAFKYQRKLQI
LSRRLSGSRAHSLNPFIPLASCVDLFLKSPPLVTRFAYELLPMRKGKNDVEGEKPEAHRS
EQGLWWIKNDSELAQVHRAALHGGRPVGVSVGLEDLGLIIGRQGWGWLLLRGTAALERWL
VVGGQRVGILVGFAEGGRGPYGTSGFHFLLWESGLSEPKCHTARKLQQPQRHMWEGVRVP
GQQPLPTVSILELTRKWILQLHSRLPCWKYMEQEQPSAQSSPQNAD

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_2|1581_bp
atgaagaatcttgggagtcttggaggggcactggacttcacatggcatcatgtagaagca
gaacctttggaatcaaatagcccagagcaggggcaggaagaagaaacctgtggtgtggac
tccaggcttgatgttcacatctgcccttcctgtgaggaccactatgtctctacactgttc
tttgctgcacaaaacatttgtttaatccttacagctactcctggaatgggcgcatttatg
ccctttttaatgatgaggccacaagtagtgatcagaaaaccagcatctcctcgagactca
cctgtcttagaaggtccaggtgtgtgtgagaaccgggatgcgctgtctgccgctgcccgg
cgccgccacacggtggcgccgttggacggtcccacagtcttccacaaagcggcttttgtc
cgtatccccgcacagccgccgaggttagcacccctcatggaagccaggctggttttccct
ctggtctacaagccaaagaagctggcgctattcttaccaggaaaggggactacagattta
atttttaaatcttttgcaagcacccctcttcaagcactggtgagacctgcagccacctct
cagagtcagcagggctattacaagatgttggggccagccgcctccttaaactcagcacta
cagtacagcattgataaagcaaacaaggcaagcttgtttgtacttcgtatgtcttcagaa
atgagctggcagttttgtagtaacactgaggaattacactttagtgcatcactgaactat
tcctgcatgtccatacaagtgttgtccacagagtacacatcttccccgtcctatcccata
cccccaaccctaagacagtctgtcaagccagctttcaagtatcagagaaagctgcagatt
ctatctagaagattgtctggatctagagcccactcattgaaccctttcattccacttgcg
agctgtgttgatctctttttgaaatctcctccactggttacacgttttgcttatgagtta
ttgcccatgagaaagggcaagaatgatgtggaaggtgagaagcctgaggcccacaggtca
gagcaaggattatggtggattaaaaatgacagcgaattggcccaggtacacagggctgcc
ctacatggtgggcgtcctgtaggcgtctcagttggcttggaggacctggggcttataatt
gggcgccagggttgggggtggctgcttctgcggggcaccgcagccttggagaggtggctg
gtagttggagggcagcgagtaggcattctggtgggctttgcggaaggagggcgggggcct
tacgggaccagcggcttccacttcctgctctgggaatctggactctcggaacccaaatgc
catactgcgaggaagcttcagcagccccagagacacatgtgggaaggagttagggtccct
ggtcagcagcctctgccgacagtcagcattttggagctaactaggaagtggatcctccag
ctccattcaagacttccttgttggaaatacatggaacaagaacagccgtctgctcagagt
tctccccaaaatgcagattaa

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_3|292_aa
MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP
VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT
TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE
KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI
KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_3|879_bp
atggcggcctgcattgcagcggggcactgggctgcaatgggcctaggccggagtttccaa
gccgccaggactctgctccccccgccggcctctatcgcctgcagggtccacgcggggcct
gtccggcagcagagcactgggccttccgagcccggtgcgttccaaccgccgccgaaaccg
gtcatcgtggacaagcaccgccccgtggaaccggaacgcaggttcttgagtcctgaattc
attcctcgaaggggaagaacagatcctctgaaatttcaaatagaaagaaaagatatgtta
gaaaggagaaaagtactccacattccagagttctatgttggaagtattcttcgtgttact
acagctgacccatatgccagtggaaaaatcagccagtttctggggatttgcattcagaga
tcaggaagaggacttggagctactttcatccttaggaatgttatcgaaggacaaggtgtc
gagatttgctttgaactttataatcctcgggtccaggagattcaggtggtcaaattagag
aaacggctggatgatagcttgctatacttacgagatgcccttcctgaatatagcactttt
gatgtgaatatgaagccagtagtacaagagcctaaccaaaaagttcctgttaatgagctg
aaagtaaaaatgaagcctaagccctggtctaaacgctgggaacgtccaaattttaatatt
aaaggaatcagatttgatctttgtttaactgaacagcaaatgaaagaagctcagaagtgg
aatcagccatggcttgaatttgatatgatgagggaatatgatacttcaaaaattgaagct
gcaatatggaaggaaattgaagcgtcgaaaaggtcttga

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_4|123_aa
MGRNQCKKAENSKNQNARSSKNHNSSPAREQNRMENEFDEVTEVGFRRWVITNSSELKEH
VLTQWKEAKNLEKRLEACLTRAPEGSAKHGKVQLVPDAAKTYRIVKTINAMKKLRQLMSK
MTS

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_4|372_bp
atggggagaaaccagtgcaaaaaggctgaaaattccaaaaaccagaatgcccgttcttca
aagaatcacaactcatcaccagcaagggaacaaaaccggatggagaatgagtttgacgaa
gtgacagaagtaggcttcagaaggtgggtaataacaaactcctctgagctaaaggagcat
gttctaacccaatggaaggaagctaagaaccttgaaaaaaggttagaggcctgccttaca
agagctcctgaaggaagcgctaaacatggaaaggtacaactggtaccagacgctgcaaaa
acataccgaattgtaaagaccatcaacgctatgaagaaactgcgtcaactaatgagcaaa
atgaccagctag

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_5|773_aa
MKLRTLAVSVTALKVARLGSAPSDVQMCLEFLPSDSGAQLASPSGSRTGAAGGAACQSGA
VRSYSSALGWSMGLGAVEQGVVLVGDARAAQEPMEWMGGSGMAGCRSRALHRGKAAKARR
EIEHSAGRKGLFGSARLIPATAMAPRSRLLSLGRRGNFRSRVLRRKSRPLEEAARRWRDC
PTGFGALVAGAGSGRAPGVPPKRLPARTKAQVSRETRGSGEVTAQGGKGPRGLWILLWGF
YNLLPTTSHAESYPERLIQKVVSEKIARALARYLHLPFGLLGGNKTIVYSWEALRFHHQL
TPSVITNTVIKVYEEPKLSQQKSRTLDVSTDEEDKIHHSSESKDDQGLSSDSSSSLGEKE
LSSTVKIPDAAFIQAARRKRELARAQDDYISLDVQHTSSISGMKRESEDDPEISRNEETS
EESQEDEKQDTWEQQQMRKAVKIIEERDIDLSCGNGSSKVKKFDTSISFPPVNLEIIKKQ
LNTRLTLLQETHRSHLREYEKYVQDVKSSKSTIQNLESSSNQALNCKFYKSMKIYVENLI
DCLNEKIINIQEIESSMHALLLKQAMTFMKRRQDELKHESTYLQQLSRKDETSTSGNFSV
DEKTQWILEEIESRRTKRRQARVLSGNCNHQEGTSSDDELPSAEMIDFQKSQGDILQKQK
KVFEEVQDDFCNIQNILLKFQQWREKFPDSYYEAFISLCIPKLLNPLIRVQLIDWNPLKL
ESTGLKEMPWFKSVEEFMDSSVEDSKKESSSDKKVLSAIINKTIIPRLTGTAS

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_5|2322_bp
atgaagctgcggaccctcgcggtgagcgttacagctcttaaggtggcgcgtctggggtct
gccccttctgatgttcagatgtgtttggagtttcttccttctgactcaggagcccaactg
gcttcacctagtggatcccgcaccggggctgcaggtggagctgcctgccagtccggcgcc
gtgcgctcgtactcctcagcccttgggtggtcgatgggactgggcgccgtggagcagggg
gtggtgctcgtcggggatgctcgggcagcacaggagcccatggagtggatgggaggctca
ggcatggcgggctgcaggtcccgagccctgcaccgcgggaaggcagctaaggcccggcga
gaaatcgagcacagcgccggccgaaaaggacttttcggcagcgcgcggctgattccagcg
acagcgatggcgccgaggagtcgcctgctgagcctggggcgccgagggaacttccggtcc
cgggttctgcggaggaagagccgccctctggaggaggccgcgcgcaggtggcgggactgc
cccaccgggttcggggccctcgtggccggggccgggtctgggcgagctcccggcgtgcca
ccaaagcggctccccgcgcggacgaaggctcaggtgtccagggagacgcggggaagcggg
gaggtgacggcacagggcgggaaggggccgcggggtctctggatccttctctgggggttc
tataacttgctgccgaccacaagccatgctgagtcttatccagaaagacttatccagaag
gtagtgagcgagaaaatagctcgagcacttgcccgctatctgcatctgccttttggactc
cttgggggaaataaaacaatcgtgtacagttgggaggctcttcgttttcaccatcagttg
actccatcagttataactaacacagttatcaaagtttatgaagaacctaaactgtcacaa
caaaaatccagaacccttgatgtgtccacagatgaagaggataaaatacatcactcctca
gaaagtaaggatgatcagggtttgtcttctgacagttctagctctcttggagaaaaagaa
ctttcatcaacagttaagatcccagatgcagcttttattcaggcagcccgcagaaaacgt
gaattggccagggcccaagatgactatatttctttggatgtacaacatacctcctccatc
tctggtatgaagagagagagcgaagatgaccctgagataagcagaaatgaagaaacaagt
gaagaaagtcaggaagatgaaaagcaagatacttgggaacaacagcaaatgaggaaagca
gttaaaatcatagaggaaagagacatagatctttcctgtggcaatggatcttcaaaagtg
aagaaatttgatacttccatttcatttccgccagtaaatttagaaattataaagaagcaa
ttaaatactagattaacattactacaggaaactcaccgctcacacctgagggagtatgaa
aaatacgtacaagatgtcaaaagctcaaagagtaccatccagaacctagagagttcatca
aatcaagctctaaattgtaaattctataaaagcatgaaaatttatgtggaaaatttaatt
gactgccttaatgaaaagattatcaacatccaagaaatagaatcatccatgcatgcactc
cttttaaaacaagctatgacctttatgaaacgcaggcaagatgaattaaaacatgaatca
acgtatttacaacagttatcacgcaaagatgagacatccacaagtggaaacttctcagta
gatgaaaaaactcagtggattttagaagagattgaatctcgaaggacaaaaagaagacaa
gcaagggtgctttctgggaattgtaaccatcaggaaggaacatctagtgatgatgaactg
ccttcagcagagatgattgacttccaaaaaagccaaggtgacattttacagaaacagaag
aaagtttttgaagaagtgcaagatgatttttgtaacatccagaatattttgttgaaattt
cagcaatggcgagaaaagtttcctgactcctattatgaagctttcattagtttatgcata
ccaaagcttttaaatcccctaatacgagttcagttgattgattggaatcctcttaagttg
gaatccacaggtttaaaagagatgccatggttcaaatctgtagaagaatttatggatagc
agtgtggaagattcaaagaaggaaagtagttcagataaaaaagtcttgtctgcaatcatc
aacaaaacaattattccccgacttacaggtactgcttcgtaa

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_6|88_aa
MQALAVPPTREHVCWRWLFYRSDAGSNVQLGPWLQRVEAPSLGIFHMPGCPGKSLLQGQG
LMENLCYGNAEGKCGVGAPTQSPYWGTA

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_6|267_bp
atgcaggctctggctgttccaccaacccgggagcatgtctgctggaggtggctgttttac
aggtcagatgcagggtccaatgtacagcttgggccatggctccagagggtggaagcccca
agccttggcatcttccacatgcctggatgcccaggcaaaagtttgctgcaggggcagggc
ctcatggagaacctctgctacggcaatgcagaagggaaatgtggggtgggagcccccaca
cagagtccctactggggcactgcctag

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_7|98_aa
MGKSQSIRGGEEQQEQSAQGPADCFLPREQGAKDEVIQESDADITSTKCDKGCKTESSAI
GTQRRESLTLPNTERESFRKLNGKWNSKKNIVYNKLEV

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_7|297_bp
atgggtaagtcacagagtataagaggaggagaagaacagcaggagcagtcagcacaggga
cctgccgactgctttcttcccagagaacaaggggctaaggatgaagtgatacaagagtca
gatgcagacataacttcaacaaaatgtgataaaggctgtaagacagaatcaagtgctata
gggacacaaaggagagaaagcctcactctgcctaacaccgagagggagtctttcaggaag
ttaaacggtaaatggaattccaagaaaaacattgtatacaataaactggaagtgtga

>gi568815596r:75564669_75810855|GENSCAN_predicted_peptide_8|148_aa
MTEAQVKETWVSESLRGRLPTEQLIGLYVRENPKSVVGRKIQYKDIVMHKTEQQNVRTDF
RNMAAGGQSHWMWQSDMDEVAAANIQCGEQHPPLQLLGTEIEEALQAQRLTSADPLGSRA
RKAINAYASNYLIRWVAVYLEEVTLEQK

>gi568815596r:75564669_75810855|GENSCAN_predicted_CDS_8|447_bp
atgacagaggcacaggtgaaagaaacctgggtctctgaatcactacgtggaaggctgcct
acggaacaacttattggactgtacgtgagggagaacccaaagtctgttgtggggagaaaa
atccagtataaggacattgtgatgcacaaaactgagcagcagaatgtaagaactgatttc
aggaacatggcagcaggtggccagtctcactggatgtggcaatcggatatggatgaagtg
gcagcagctaacattcagtgtggagagcagcaccctcccctccagcttttgggaacagaa
atagaggaagcgttgcaggcacaacgtctcacatcagcagatcctctgggttcaagggcg
agaaaggctattaacgcatatgcaagtaattacctcatacgttgggtagcagtctacctt
gaggaggtgacacttgagcagaaatga