GENSCAN 1.0	Date run:  6-Nov-116	Time: 11:03:01

Sequence gi568815596r:6749853_6965696 : 215844 bp : 43.02% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    540    668  129  2  0   66   42   148 0.976   8.15
 1.02 Intr +   1589   1743  155  1  2   50   59    98 0.576   1.97
 1.03 Intr +   4847   4962  116  2  2   37  127    17 0.291   0.59
 1.04 Intr +   9579   9696  118  1  1  112   52    32 0.178   1.52
 1.05 Intr +  11268  11436  169  0  1   58   97    34 0.191   1.25
 1.06 Intr +  12361  12548  188  0  2   24  109    85 0.147   2.69
 1.07 Term +  22867  22954   88  1  1   52   40   171 0.093   5.83
 1.08 PlyA +  22999  23004    6                               1.05

 2.04 PlyA -  23171  23166    6                               1.05
 2.03 Term -  23332  23194  139  0  1   87   45    41 0.493  -2.86
 2.02 Intr -  23531  23407  125  2  2  109   81    82 0.555   8.98
 2.01 Init -  31189  31088  102  1  0   77   84    68 0.770   5.54
 2.00 Prom -  33577  33538   40                              -4.26

 3.02 PlyA -  36060  36055    6                               1.05
 3.01 Sngl -  40088  39819  270  2  0   80   47   139 0.821   4.28
 3.00 Prom -  40294  40255   40                              -4.06

 4.06 PlyA -  40341  40336    6                               1.05
 4.05 Term -  46412  46283  130  1  1   96   47    69 0.023   1.25
 4.04 Intr -  67462  67363  100  2  1   52   96    71 0.061   3.47
 4.03 Intr -  71296  71143  154  1  1  120  -13    80 0.062   0.75
 4.02 Intr -  71571  71439  133  2  1   92   72    46 0.740   4.05
 4.01 Init -  84443  84352   92  2  2   61   94    35 0.284   1.36
 4.00 Prom -  86308  86269   40                              -4.96

 5.08 PlyA -  87448  87443    6                               1.05
 5.07 Term -  90826  90711  116  2  2  117   44    74 0.615   4.63
 5.06 Intr -  99511  99427   85  1  1   62   82    21 0.428  -1.71
 5.05 Intr - 100121 100037   85  1  1   97   19    98 0.395   3.62
 5.04 Intr - 101831 101598  234  1  0   73   56   146 0.469   6.70
 5.03 Intr - 111533 111332  202  0  1   57   96   155 0.988  11.54
 5.02 Intr - 113726 113612  115  2  1   46   94   158 0.995  12.22
 5.01 Init - 115844 115170  675  2  0   87   94   950 0.995  88.67
 5.00 Prom - 124022 123983   40                              -6.06

 6.00 Prom + 127890 127929   40                              -4.66
 6.01 Init + 127949 128294  346  1  1   82  105   237 0.565  20.48
 6.02 Intr + 133519 133680  162  2  0   43   54   138 0.604   5.85
 6.03 Intr + 137083 137312  230  2  2   65  106   240 0.994  21.09
 6.04 Intr + 140324 140473  150  1  0   73    1   175 0.322   7.66
 6.05 Intr + 143819 143851   33  1  0  105   73    40 0.479   2.62
 6.06 Term + 145926 146090  165  2  0   54   43   130 0.528   3.02
 6.07 PlyA + 147451 147456    6                               1.05

 7.02 PlyA - 148736 148731    6                               1.05
 7.01 Sngl - 154092 153493  600  0  0   79   49   312 0.994  22.60
 7.00 Prom - 166092 166053   40                              -3.56

 8.10 PlyA - 166291 166286    6                               1.05
 8.09 Term - 171787 171423  365  2  2   91   44   132 0.467   3.83
 8.08 Intr - 173827 173673  155  0  2   47   44    53 0.221  -3.48
 8.07 Intr - 174585 174378  208  1  1   56   32   162 0.322   5.54
 8.06 Intr - 175230 175040  191  2  2   19   70    53 0.235  -4.17
 8.05 Intr - 176872 176717  156  0  0   26   69   121 0.430   3.13
 8.04 Intr - 179147 178962  186  1  0   28   94   118 0.120   5.20
 8.03 Intr - 181315 181207  109  2  1   55   76    39 0.061  -1.26
 8.02 Intr - 186210 186141   70  0  1   95   77    75 0.111   5.85
 8.01 Init - 206624 206463  162  2  0   85   57   101 0.277   6.43
 8.00 Prom - 212279 212240   40                              -3.16


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  20313  20227   87  1  0   85   86    55 0.884   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_1|320_aa
MGSGEENVCVLVGNGTEKRKSIFSAKIAVCVPFECTRREGKQKLKWGDIAQIVLTLNAPT
FAGRGTSLGLRHIDESSDNTESHVHCDINSSLNLFLCVSLGNSTCTVISLCFLNPELFDS
LGSHLYSACNSCNGSVQPLLLMLHSVPGKLDASSMFNFADTSISLVPSSRFLFRGQVFTD
IMFMFDSPWTPAGALYLNCGATHKGHGQSGCRFARCSYPSDTQELFEGQTLPAEVTTVPA
EEDAFPQEHGHKETVSKAALSVSLLLRFWDSDWLPGSSDCRHPIVGLHFVIRLSPSFLGQ
TFTVEQKAAYNIAQIKAKKN

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_1|963_bp
atgggaagtggagaagagaacgtctgcgtcttagtgggaaatggcacagagaagaggaaa
tctattttctcagccaaaattgccgtgtgcgttcccttcgaatgcacacgaagggaagga
aaacagaagctaaaatggggagacatagcacagattgttctaactctcaatgcccctaca
tttgctggtagaggtacgtccttaggtctacggcacattgacgagtctagtgacaatacg
gaatcccacgtccactgtgacattaactcatcactcaaccttttcctctgtgtctccctg
ggcaacagcacctgtaccgtcattagtctttgctttctcaacccagagctgtttgactca
ctgggttcacacctctattctgcttgcaattcatgtaacggttctgtacagcctctcctg
ctcatgctgcacagcgttccgggaaagctggatgcatcgagcatgtttaatttcgctgat
acatccatctctttggtcccttcatcacgatttctttttagaggccaggtgttcacagac
ataatgttcatgtttgactcaccctggacccctgctggggcactgtatctaaactgtggg
gcaacccataaaggccatggccaatctggttgtagatttgcaagatgttcttatcctagt
gatacccaagagctgtttgagggacagactctcccagctgaagtgacaactgtcccagct
gaagaagatgcctttccccaggagcatggccacaaggagacagtgtccaaggctgcactg
tcagtctccttacttttgagattttgggactcggactggcttcctggctcctcagattgc
agacatcctattgtgggacttcactttgtgatcagattgtccccgtccttcctcgggcag
accttcaccgtggagcagaaagctgcctacaatatcgcccaaatcaaagccaagaagaat
tag

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_2|121_aa
MWKDDANLAGSQRENICFNRQEMLGCRESPRKSQAAEDRTGERAAASRGLTTGWHCCSME
SCQRRPRGPGHVEHKSVSCRPGPVSDCGLWVEPMGSVRVELALPRPTAPGAATSRVTRAA
S

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_2|366_bp
atgtggaaagatgatgccaatctggctggcagccagagagagaacatctgttttaataga
caggaaatgctgggatgccgtgagagcccccgtaagagccaggccgctgaggaccgcaca
ggggagcgggcggcggcatcgcgaggactgaccactgggtggcactgttgctccatggag
agctgccaacggcgtccccggggacccggccacgttgagcacaaaagcgtctcctgccgc
ccggggccggtttctgactgtggactctgggttgagcccatggggtcagtgcgcgtggag
cttgcactgcccagacccacagccccaggagcagccacctcccgtgtcacccgggcggcg
tcctga

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_3|89_aa
MPECFPNAMRNSTWNYRLELMCKSIGLVRVQLDELTFLQDATTNAAPLESNAEGEVEATA
RPSTLHDALGCPVPDIVWLASLRSSCYKE

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_3|270_bp
atgcctgagtgctttcctaatgccatgagaaattcaacgtggaattacaggcttgagtta
atgtgcaagagtatcgggttggttcgtgtgcagctagatgagctgacttttctgcaggat
gctactaccaatgcagcccctctagagagcaatgctgaaggggaagtagaggctacagcg
aggccatccactcttcatgatgcattaggatgtcctgttcctgacatagtctggctggct
tcattacgctcatcctgctacaaagaataa

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_4|202_aa
MSCDDRGRDWTDAAESQEHQNMIITTKRWKRLTGAQVKKEPQTYFLPCPFRPLGADISFA
AVRPSLPRSLELNAGMRAPTLPPTPAAELRFLSTAVRFQPRSDASDVISSSCLWTWFSQG
LSPCVHEFPGLAEAEDTCSTCLPQLVDHGLLSWVGHIQAGQHFTPRSPHSLNSTNAGFGE
TDFADIWEPYSGPIREQATTYE

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_4|609_bp
atgtcatgtgatgatagaggtagagattggactgatgcagctgaaagccaggaacaccaa
aatatgatcatcactaccaaaagatggaagaggctcacaggagcccaggtcaagaaggaa
ccacagacgtacttcctcccctgccccttccgtcccctgggagctgacatttcctttgca
gcagtccgtcccagtttacccaggagcctggagctcaacgctgggatgagagcacccacg
cttcctccaactcctgccgcagagctgcgtttcctcagtactgctgtccgcttccagccc
cgctccgacgcatctgacgtcatttcctcgtcttgtctctggacctggttctcccaaggc
ctcagtccctgtgtccatgagtttccaggcctggcagaggctgaggacacatgcagcacc
tgcctgccccagctggtggaccatgggttgctgtcctgggttggacatatccaggcaggc
cagcattttactcctcgctcccctcattctttaaactccaccaacgcaggctttggagaa
acagactttgctgacatttgggagccatacagtggccccatcagagaacaggcaacaact
tatgaatga

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_5|503_aa
MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENP
GCHVVDASPSREKVLQTSQILEPSVPAEAVYVSWLPKDTPAEPFLGPSWEEPYTILLSTC
SAVKFVGLESWIHHTRVKAWNDP

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_5|1512_bp
atggccttcgcccgccggctcctgcgcgggccactgtcggggccgctgctcgggcggcgc
ggggtctgcgctggggccatggctccgccgcgccgcttcgtcctggagcttcccgactgc
accctggctcacttcgccctaggcgccgacgcccccggcgacgcagacgcccccgacccc
cgcctggcggcgctgctggggcccccggagcgcagctactcgctgtgcgtgcccgtgacc
ccggacgccggctgcggggcccgggtccgggcggcgcggctgcaccagcgcctgctgcac
cagctgcgccgcggccccttccagcggtgccagctgctcaggctgctctgctactgcccg
ggcggccaggccggcggcgcacagcaaggcttcctgctgcgcgaccccctggatgaccct
gacacccggcaagcgctgctcgagctgctgggcgcctgtcaggaggcaccacgcccgcac
ttgggcgagttcgaggccgacccgcgcggccagctgtggcagcgcctctgggaggtgcaa
gacggcaggcggctgcaggtgggctgcgcacaggtcgtgcccgtcccggagcccccgctg
cacccggtggtgccagacttgcccagttccgtggtcttcccggaccgggaagccgcccgg
gccgttttggaggagtgtacctcctttattcctgaagcccgggcagtgcttgacctggtc
gaccagtgcccaaaacagatccagaaaggaaagttccaggttgttgccatcgaaggactg
gatgccacgggtaaaaccacggtgacccagtcagtggcagattcacttaaggctgtcctc
ttaaagtcaccaccctcttgcattggccagtggaggaagatctttgatgatgaaccaact
atcattagaagagctttttactctttgggcaattatattgtggcctccgaaatagctaaa
gaatctgccaaatctcctgtgattgtagacaggtactggcacagcacggccacctatgcc
atagccactgaggtgagtgggggtctccagcacctgcccccagcccatcaccctgtgtac
cagtggccagaggacctgctcaaacctgaccttatcctgctgctcactgtgagtcctgag
gagaggttgcagaggctgcagggccggggcatggagaagaccagggaagaagcagaactt
gaggccaacagtgtgtttcgtcaaaaggtagaaatgtcctaccagcggatggagaatcct
ggctgccatgtggttgatgccagcccctccagagaaaaggtcctgcagacgtcccaaatt
ctagagccaagtgttcctgcagaggctgtctatgtgtcctggctgcccaaggacactcct
gcagagccatttttgggtcccagctgggaggaaccttataccatccttctctccacctgc
tcggcagtgaagtttgtgggactggaatcttggattcatcacactcgagtcaaggcctgg
aatgacccctga

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_6|361_aa
MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRRKQQLVLRGPDETK
EEEEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGMEKI
NFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILAISC
DSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQIKAL
NPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKMKDS
YLILDEYMRFLNCRKGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYIWSKADLKLD
W

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_6|1086_bp
atgtgggtgcttacacctgctgcttttgctgggaagctcttgagtgtgttcaggcaacct
ctgagctctctgtggaggagcctggtcccgctgttctgctggctgagggcaaccttctgg
ctgctagctaccaagaggagaaagcagcagctggtcctgagagggccagatgagaccaaa
gaggaggaagaggaccctcctctgcccaccaccccaaccagcgtcaactatcacttcact
cgccagtgcaactacaaatgcggcttctgtttccacacagccaaaacatcctttgtgctg
ccccttgaggaagcaaagagaggattgcttttgcttaaggaagctggtatggagaagatc
aacttttcaggtggagagccatttcttcaagaccggggagaatacctgggcaagttggtg
aggttctgcaaagtagagttgcggctgcccagcgtgagcatcgtgagcaatggaagcctg
atccgggagaggtggttccagaattatggtgagtatttggacattctcgctatctcctgt
gacagctttgacgaggaagtcaatgtccttattggccgtggccaaggaaagaagaaccat
gtggaaaaccttcaaaagctgaggaggtggtgtagggattatagagtcgctttcaagata
aattctgtcattaatcgtttcaacgtggaagaggacatgacggaacagatcaaagcacta
aaccctgtccgctggaaagtgttccagtgcctcttaattgagggtgagaattgtggagaa
gatgctctaagagaagcagaaagatttgttattggtgatgaagaatttgaaagattcttg
gagcgccacaaagaagtgtcctgcttggtgcctgaatctaaccagaagatgaaagactcc
taccttattctggatgaatatatgcgctttctgaactgtagaaagggacggaaggaccct
tccaagtccatcctggatgttggtgtagaagaagctataaaattcagtggatttgatgaa
aagatgtttctgaagcgaggaggaaaatacatatggagtaaggctgatctgaagctggat
tggtag

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_7|199_aa
MRKNQHKNAENSKNHNASSPPKDHNSPPARKQNWMQNEFDRLTEVDFRRWVTTNSSKLKE
HVLTQCKEAKNLDKRLQELLTRITSLEKNINDLIELKNTAQELHEAYTSINSRIDQVEEM
ISKIEDQLNEIKREDKIREKRMQRNKQSLQEIWDYVKRPNLRLIGVPERDEDNGTKLENT
SGYHPGELPQPSKTGQHSN

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_7|600_bp
atgaggaaaaaccagcacaaaaatgctgaaaattccaaaaaccacaatgcctcttctcct
ccaaaggatcacaactccccaccagcaaggaaacaaaactggatgcagaatgagtttgac
agactgacagaggtagacttcagaaggtgggtaacaacaaactcctccaagctaaaggag
catgtcctaacccaatgcaaggaagctaagaaccttgataaaaggttacaggaactgcta
actagaataaccagtttagagaagaacataaatgacctgatagagctgaaaaacacagca
caagaacttcatgaagcatacacaagtatcaatagccgaatcgatcaagtggaagaaatg
atatcaaagattgaagatcaacttaatgaaataaagcgtgaagacaagattagagaaaaa
agaatgcaaaggaacaaacaaagcctccaagaaatatgggattatgtgaaaagaccaaat
ctacgtttaattggtgtacctgaaagagacgaggataatggaaccaagttggaaaacact
tcaggatatcatccaggagaacttccccaacctagcaagacaggccaacattcaaattag

>gi568815596r:6749853_6965696|GENSCAN_predicted_peptide_8|533_aa
MGIYATTYRNDIQKDVWCTDEIRELKAASSGGTSDSLVGLLHNHFRYTPWVQTKAEPPKF
PKGTVKAVKNRNLTDIEALTTTAALGDASGLCRAHCPSSDMNSTQSDLQVHGIREQMDAD
FIPCHPQNAKLLRELTGSEGATQNPQKWQEEDGPVSDHHRRQAATAGDTGNAGKSREKTQ
IHFNKYLLSASYEKPVCRVLEGYKDNQDRTGIPSPHCTHTEPIDGTHRLQSSSAYAIKIR
RVAIEVARKLTEGPRCFLTFSIRQRASPKVSGSPHPSQSKGSLGAHSLCYAYSQDMRSDG
HIQALGSNHSTLCISLHIAGKGHVLCFPCIAQCLGPPSNTATEVSPAVTLDLTYMVSTQP
RSAPCGSIFSSVQCQCQRRASPQSPTLAILQLEGKAAFVMSLQESLGSWHMDDYSLLKVM
GSILICRPLGSKPGFKIDDVCAMLDNIPALCFTLLLCQLGIATYACAAGLCENCIHDASK
ALKIRQIHNEYQPPPPPLVPNTPEMIKYWLTHCMPPRSLLLSGTLHPAYKPAP

>gi568815596r:6749853_6965696|GENSCAN_predicted_CDS_8|1602_bp
atggggatctatgcaacaacctacagaaatgacatccaaaaagatgtgtggtgtacagat
gagattagggagctgaaagctgcttcttctggaggcacctctgactctcttgttgggcta
cttcacaaccatttcaggtacacgccatgggtacagacgaaggccgagccgcccaagttc
cctaaaggaacagtgaaagcagtgaaaaacagaaacctgacagatattgaagcactgacc
acgaccgctgcactaggagatgcttctggactctgccgggcacactgtcccagttctgac
atgaacagtactcagtcagacctgcaggtgcatggtatcagggagcaaatggatgctgac
ttcattccatgtcacccccaaaatgccaagctgctcagggaactgacagggtctgaaggg
gccacgcagaacccccagaagtggcaggaagaggatgggccagtttctgaccatcaccga
aggcaggctgccacagcaggagacactgggaatgcaggaaaaagcagggaaaagacgcag
attcatttcaacaaatatttattgagcgcctcctatgagaagcctgtgtgccgagtgcta
gaggggtacaaagacaaccaggacaggactgggattcccagcccacactgtacccacacc
gaacctattgatggaacacacaggctacaaagctccagtgcatacgctatcaaaattcgc
cgtgtggcaatcgaggtcgccagaaaactcacagaaggacccaggtgcttcctgacattc
tccatccgtcaaagagccagccccaaggtctctggaagcccacacccttcccaaagcaaa
ggctcccttggagcacacagcctgtgttatgcttactcccaggacatgcgctcggatggg
cacattcaggcgcttggttctaaccattccacattatgcatctcccttcacatcgcaggc
aaaggccacgtcctatgcttcccgtgcatcgcacagtgcctcgggccccccagcaacacg
gccacggaagtctcgccagctgttactctggatctcacttacatggtgtctacacaacca
cgttctgctccgtgcggctccatcttctcatctgtgcaatgccagtgtcagaggagagca
tctccacagtcacccacattggcaattttacagctggaaggaaaggcagcatttgtgatg
agccttcaagaatcattaggaagctggcacatggatgactacagcctcctcaaggtcatg
ggatctatccttatctgcaggcctctgggttcaaagccaggcttcaaaattgacgacgtg
tgtgcgatgttggacaacatccctgctctctgcttcactctgctcctctgtcagctaggg
atagcaacatacgcctgtgctgcagggctgtgtgagaactgcatccacgatgcaagcaaa
gccctgaagatcaggcaaatccataatgagtatcaaccacctcctccacctctagtgcca
aacacacctgagatgataaaatactggttgacacactgcatgccaccaaggagcttgctt
ttgtctggaacactgcatccagcttataagcctgctccttag