GENSCAN 1.0	Date run:  6-Nov-116	Time: 18:35:27

Sequence gi568815596r:27681618_27990345 : 308728 bp : 40.83% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    631    742  112  1  1   78   98    73 0.962   6.76
 1.02 Intr +   3420   3660  241  2  1   81   45   274 0.552  18.60
 1.03 Intr +   7083   7150   68  1  2   30  106    51 0.233  -1.19
 1.04 Intr +  12068  12137   70  1  1  101   71    58 0.169   3.24
 1.05 Intr +  34717  34836  120  2  0  103   60    46 0.066   2.85
 1.06 Intr +  35230  35401  172  2  1   37   87    70 0.197  -0.12
 1.07 Intr +  38607  38775  169  0  1   77   78   153 0.953  12.23
 1.08 Intr +  43420  43524  105  0  0  110   78    41 0.926   4.79
 1.09 Intr +  46000  46068   69  0  0   97  113    95 0.896  11.36
 1.10 Term +  49048  49383  336  0  0  106   42    98 0.421   0.59
 1.11 PlyA +  51792  51797    6                               1.05

 2.05 PlyA -  53029  53024    6                               1.05
 2.04 Term -  54494  54379  116  0  2   74   45   151 0.841   7.15
 2.03 Intr -  54931  54745  187  1  1   62   11   145 0.295   2.54
 2.02 Intr -  65133  64977  157  2  1   97   76    66 0.239   5.39
 2.01 Init -  65357  65275   83  2  2   82   81    78 0.907   6.99
 2.00 Prom -  65700  65661   40                              -6.75

 3.00 Prom +  66562  66601   40                              -7.95
 3.01 Init +  67103  67132   30  1  0   72  113    24 0.414   1.74
 3.02 Intr +  71226  71330  105  2  0   46  116    63 0.637   4.39
 3.03 Intr +  71374  71469   96  0  0   83   75    37 0.655   1.19
 3.04 Intr +  75381  75461   81  2  0   87   42    62 0.056   0.42
 3.05 Intr +  86329  86421   93  0  0  103   92    30 0.785   4.14
 3.06 Term +  86956  87120  165  0  0   79   36    92 0.645   0.03
 3.07 PlyA +  87453  87458    6                               1.05

 4.12 PlyA -  89022  89017    6                               1.05
 4.11 Term -  90192  89668  525  0  0   74   48   264 0.116  14.27
 4.10 Intr -  94827  94680  148  2  1   38   80    87 0.131   2.22
 4.09 Intr - 117505 117379  127  2  1   91   49    70 0.088   2.22
 4.08 Intr - 119519 119306  214  2  1   79  -20   156 0.024   1.27
 4.07 Intr - 136172 135987  186  2  0   87   87    48 0.102   3.56
 4.06 Intr - 146138 145950  189  2  0   95  127    83 0.994  11.76
 4.05 Intr - 151160 151069   92  0  2  115   94    96 0.983  11.69
 4.04 Intr - 161614 161450  165  2  0   53   76   112 0.954   5.51
 4.03 Intr - 165487 165425   63  2  0  112  115    58 0.986   8.67
 4.02 Intr - 166480 166417   64  1  1   62   98    42 0.596  -0.03
 4.01 Init - 169758 169600  159  0  0   61   91    78 0.526   5.27
 4.00 Prom - 172967 172928   40                              -3.95

 5.03 PlyA - 173375 173370    6                               1.05
 5.02 Term - 189642 189348  295  2  1   71   43   207 0.439   8.29
 5.01 Init - 208728 208640   89  0  2   87   92   111 0.180  11.62
 5.00 Prom - 211248 211209   40                              -7.25

 6.02 PlyA - 211377 211372    6                               1.05
 6.01 Sngl - 215226 215020  207  0  0   88   44   275 0.803  18.04
 6.00 Prom - 217314 217275   40                              -5.05

 7.00 Prom + 222899 222938   40                              -3.95
 7.01 Init + 222993 223027   35  2  2   74   87    21 0.182  -0.01
 7.02 Intr + 226081 226148   68  1  2  102   78    34 0.061   1.43
 7.03 Intr + 236637 236697   61  1  1   97  103    34 0.066   2.67
 7.04 Term + 244178 244301  124  2  1  128   48   105 0.172   7.38
 7.05 PlyA + 245586 245591    6                               1.05

 8.00 Prom + 254859 254898   40                              -3.65
 8.01 Init + 286033 286168  136  0  1   53   57   138 0.794   7.55
 8.02 Term + 286635 287173  539  1  2   26   49   246 0.845   7.92
 8.03 PlyA + 289688 289693    6                               1.05

 9.04 PlyA - 290331 290326    6                               1.05
 9.03 Term - 290596 290582   15  1  0  112   32     9 0.375  -5.04
 9.02 Intr - 290983 290851  133  0  1   45  116    42 0.132   2.43
 9.01 Init - 296733 296621  113  0  2   90   35   122 0.308   6.83
 9.00 Prom - 306879 306840   40                              -2.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  30902  30957   56  1  2   73   72    65 0.807   4.21
S.002 Sngl -  90162  89668  495  0  0   88   48   253 0.833  17.10
S.003 Term + 129332 129487  156  1  0   68   49   134 0.800   4.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_1|487_aa
XTETQTTGAENKAKKLTLPLFGAMKGGSKFKLKTGTVGKLPPKRPELPPTLMRMKDEPEV
EEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEIEPEAAVQEMRPPTDLTHFKETQTHAS
KNEYEKSRGELKKKKTPGPGKLPPTLSSKYPEDDPDYCVWVPPEAPDQALLLCWGRPRTV
SCLGALIAFLGNPAKGPPSSCSPGDDKTETQKMNQLGSVHRASVWKSQNPDPDPNCSVPA
LTPNQPVPLSLVLFHPAFLSKKEGARLEERRCAGTAFVRALKGAEWALTQLYDSFTVLLS
PSSGHILWTISAQPQVEEGLCFLLSSALSEKDPTGDLNPLNMVPGERNVGMRKPHRSLWG
WGHDGREGGKKGELPKRKGFPSQLSPQERRQLYGPGPSPEDAFLTVGRRDGMLVRVSPEV
VGKQAPFLTPPQVSGFGWKLPSSSSDKQPAPANQGSRQPTLLLNFLGVKLQKIQLLEEIV
EVMVDDK

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_1|1464_bp
nngactgaaactcagactacaggtgcagaaaacaaagctaaaaagcttacattgcctcta
tttggtgccatgaaaggaggaagcaaattcaaattaaaaactggaacagtagggaagtta
ccccccaagcgtccagaactccctccaactctaatgagaatgaaagatgagcctgaagta
gaagaggaggaggaagaggaagaggaagaagagaaagaaaaggaggagcatgaaaagaaa
aaactggaggatggaagcctcagtaggccacagccagagatagagccagaagcagcagtg
caggaaatgaggcctcccacagatctcacacattttaaagaaacccaaacccatgcatca
aagaatgaatatgagaaaagcagaggtgaattgaagaaaaagaaaacacctggtccaggc
aaacttccaccaacactttcttccaaatatcctgaagatgacccagactactgtgtgtgg
gtcccacctgaagcccctgaccaggccctgctcctctgctggggtcggccccgcacagta
agctgcctgggagccctcattgccttcctgggcaacccggccaaaggccccccgagcagc
tgcagccctggagatgacaaaactgagacacaaaagatgaatcagcttggcagtgttcac
agagccagcgtgtggaaaagccagaatccagacccagacccgaactgcagcgtcccggct
cttacccctaaccagccagtgcctctcagcttagtgctcttccacccggcttttctttct
aaaaaggaaggggcaaggctggaagaacgccgctgtgctggcacagccttcgtcagagcc
ctgaaaggggctgagtgggctctgactcagctctatgactcattcactgtattgctgtct
ccatcctctgggcacatcctctggaccatttctgctcagcctcaagtggaggaggggctt
tgtttcctgctctcctctgccctttctgaaaaggaccccacaggtgatctgaaccccctg
aatatggtgcctggggagaggaatgtgggcatgaggaaacctcataggtcgctgtgggga
tggggccacgacggaagagaaggtggtaaaaagggcgagttgcctaagagaaaagggttt
ccatcacagctttctcctcaagagagaaggcagctgtatgggcccggtcccagccctgag
gatgccttcctgacagtggggaggagggacgggatgttagttagggtctccccagaagtg
gttggtaagcaggctcctttcttgacccctccccaagtctcagggtttggctggaagctc
cccagctccagctctgacaaacaacccgctcctgcaaaccagggatctaggcagcccacc
ttgctcttaaacttccttggggttaaattacagaagattcagctgctagaagagatagtt
gaggtgatggtagatgacaaataa

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_2|180_aa
MALMMRTEQILPESPESWKPGGSRFCRKNRTRAPPSSRIPATIGQVLAETGGGLCLSLHV
NSGPQCHAPSLTPFPEKDYQECKLGVGRSFYLSRKIRYLDFYVNFSNFQKPVRTEQRISA
DCQGANSDDYDIPAALLAWSLPGRGKGGEQADTCSHKMNERMNNEQPNHRCLRWKLAAVR

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_2|543_bp
atggcactgatgatgaggactgagcagatcctcccagagagccccgagagctggaaacct
ggaggcagcagattctgcaggaaaaatagaaccagagcacccccaagttcaaggatccca
gccacaatagggcaggtgctggctgagaccggaggaggattatgtttaagtctacatgtt
aatagtggaccccaatgccatgctccttcccttaccccattcccagaaaaggactatcag
gaatgcaagcttggtgttggcagatccttttatttgtcaagaaaaatcagatatctggat
ttttatgtgaacttttccaattttcaaaagcctgtgaggacagaacaacgcatatctgca
gactgtcagggtgcaaactcggatgactatgacattcctgcagcgctcttggcctggtcc
ctgcctgggagggggaaaggtggggagcaggcagatacctgcagccacaaaatgaatgaa
cgaatgaacaacgaacagcccaaccaccgctgcctcaggtggaagttggcagctgtgcgg
tag

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_3|189_aa
MSSAWMLLPTLQITSLCSPSDSTPTEGEGDEEICQEGASRQYLMKGSFFPRATTRFGRRF
WARLPGRGGSQALGPLRGGKGKGRRGTADEIGRHKRVFLKDKAKVDLGGSGTEGRENNSR
HSPLVEKVRSVFVKNAPGTGQGARITDSVGKNSGCTSQSQVKQDVGVTMGWMMGSQGSAS
TAEEEGYSF

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_3|570_bp
atgagtagtgcatggatgctcctgcccacgctacagataacatccctttgttctcccagt
gactccacacccacagaaggagagggggatgaagaaatctgccaggagggtgcctcccgc
cagtatctgatgaagggaagcttcttccccagggccactacccgtttcgggaggcgtttc
tgggctaggcttcctggcaggggaggctctcaggcactggggccgctgaggggtgggaaa
gggaagggcagacggggaacagctgatgaaataggcagacacaagcgtgtgttcctcaaa
gacaaagccaaggttgacttgggaggaagtgggactgaagggagagaaaataactcaagg
cacagtcccttagtagagaaggttcggtctgtatttgtcaaaaacgcccctgggacaggt
cagggagccaggatcactgattctgtaggcaagaacagtggctgtacttcccaatcacaa
gtcaagcaagatgtaggtgtgacaatgggctggatgatgggcagccaggggtctgccagc
acagcagaggaggaggggtacagcttctag

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_4|643_aa
MGLIRNVIGGVEMRGLTRARVGKVDLKLILEKQVRFDLVEERGQRTSKFSEMMVGKDSFG
NDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAAN
VISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNES
EAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKA
VDTTPWKMGLLVTCHDTGVYNYSFSVDLQKLPDLEKALLTLYSILQPQLNEIIHVYPGTV
LPSTMIPLLHLLSMGGSPLPSGRLAVVDSGMLHQVGITEEVQAVPASSNPVPILSCSLTR
PSSRPLSRRLSQCSPSARRSWDSVCSSPHRSAPILLTVLGSVSAYLSYGPGLALGLRTGR
PTIIVLKLNNLLITVKHAGRTAKLFGTLGNGGRPRGKHLHHEHVQGIQQPHLQKTAERNM
VTTPGQSPSPAKRPPTNNNCFRGTARFWKRTSGSRPRPRPPPGTCLQSSGSFLGFSERVC
FAFVVLEVGILIILERDLQLRVRAPALTPISGSSAFSVRCFPYLFHEIIATTCIRPTRTT
VYCTSAAPAYQPLAYFLKMLPPPTQLPLRLVKPYSHSSESLRH

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_4|1932_bp
atgggcttgattaggaatgtcataggaggtgtggagatgagaggattaacaagggccaga
gtagggaaggtagaccttaagctgatacttgaaaaacaggtgaggtttgatttagtggag
gagagagggcaaaggacttctaagttctcagaaatgatggttggcaaagattcttttggc
aatgattatatagaaaacttaaaacagaatgatatttctacagaatttacatatcagact
aaagatgctgctacaggaactgcttctataattgtcaataatgaaggccagaatatcatt
gtcatagtggctggagcaaatttacttttgaatacggaggatctgagggcagcagccaat
gtcattagcagagccaaagtcatggtctgccagctcgaaataactccagcaacttctttg
gaagccctaacaatggcccgcaggagtggagtgaaaaccttgttcaatccagcccctgcc
attgctgacctggatccccagttctacaccctctcagatgtgttctgctgcaatgaaagt
gaggctgagattttaactggcctcacggtgggcagcgctgcagatgctggggaggctgca
ttagtgctcttgaaaaggggctgccaggtggtaatcattaccttaggggctgaaggatgt
gtggtgctgtcacagacagaacctgagccaaagcacattcccacagagaaagtcaaggct
gtggataccacgccatggaagatgggcctacttgtgacttgtcatgatacaggcgtctat
aattactccttttctgtagaccttcagaagctgccagatcttgaaaaggccttgcttacc
ttgtacagtatactgcagcctcagttaaatgaaataatccatgtataccctgggacagtg
cttccttccaccatgattcctctgctacatctcctctccatgggtggcagccctctgccc
agtggccggctagctgtggtagacagtggaatgctccatcaagttggcattactgaggaa
gtgcaggctgtccctgccagcagtaaccctgttcccatcctgtcctgcagccttacccgc
cccagctctaggcctctgtccagacgcctctctcagtgttctccctctgcacggcgttcc
tgggacagtgtgtgctcctcacctcatcgctcagcacccatcctcctgacagttcttggt
tcggtcagtgcctacctcagctatggtccaggccttgcactaggtctcaggacagggaga
ccaacaatcatcgtcctcaaacttaacaatttactcatcacagtaaaacatgctgggaga
actgccaagctatttggtaccctgggcaatgggggcaggccccgaggcaaacatcttcat
cacgaacacgtgcagggcattcagcagccccacttacagaagaccgcggagaggaacatg
gtgaccacacctgggcagtctccgtcaccggccaaaaggcccccaaccaacaacaactgc
ttccggggcacggcccggttctggaagaggacatccggcagtcgcccgaggccacgcccc
ccgcctggaacctgcctccagtcgtctggctcgttcctcggtttctcagagcgagtgtgt
tttgcttttgtcgtgctggaggttggaatcctcatcattctggaaagggatttacagctc
agggttcgcgccccggccctgactcctatttctgggtcaagtgctttcagcgttaggtgc
tttccatatttgtttcacgaaataatcgcaaccacctgcattagacccacaagaacaact
gtgtattgtacttcggccgctccagcgtatcagcccctcgcatattttcttaaaatgttg
cctcccccgacccaactccctctccgcctggttaagccttactctcactcttctgagtcc
cttcggcattaa

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_5|127_aa
MAASGEPQRQWQEEVAAVVVVGSCMTDLVSEHEEQKQSLKATASSNVSVLRVSLLVAKCI
AKAKKSFTVGEELTLPAAKDICLELLGDLAVKKVAQVPHSAGTITRQIDEIAEDIEAQLL
EWINESL

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_5|384_bp
atggcggcgtctggggaaccccagaggcagtggcaagaggaggtggcggcggtggtagtg
gtgggctcctgcatgaccgacctggtcagtgaacacgaagaacagaagcaatcattgaag
gccacagcttcatcaaatgtgtctgtactgagagtatcattgttagtggctaaatgcatt
gctaaagctaagaagtcctttactgttggtgaagagttgaccctgcctgctgctaaggac
atttgtcttgaacttttaggagatcttgcagttaaaaaggtggcacaagttcctcattca
gctggcaccataactagacaaattgatgaaatagcagaggacattgaggcacaattgtta
gagtggattaatgagtcactgtga

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_6|68_aa
MADPAEQCGPSWAQAAPDPAGHKLLAQLLEPSEEENMVCILYDKMYKNFMEEVDTIDNET
YQWKKGKL

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_6|207_bp
atggcggacccagctgagcaatgtggacccagttgggcacaagctgctccagacccagct
gggcacaagctgctggcccagttgctggagcctagtgaagaggaaaatatggtgtgcatc
ctctatgacaagatgtacaagaacttcatggaggaggtggacacaatagataatgagacc
taccagtggaagaaggggaaactttga

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_7|95_aa
MKDREQNRDNASYWQPPFWYLSLNVTTLGTSLDVTPYNYCSTFSDCEFDYFRYLIAILAL
MRLSVGLICQVGYTLLNSHITEHCLLTEDCEVNVY

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_7|288_bp
atgaaagacagagagcaaaacagagacaatgcaagctactggcagccaccattctggtat
ctgtctctgaatgtgactactttaggtacctcacttgatgtaaccccttacaactactgt
tctactttctctgactgtgaatttgactactttagatacctcatcgccattcttgctctc
atgcgcctgagtgtgggccttatctgccaggtgggctacactctgctcaactcccacatc
acagaacactgtctcctcactgaagactgtgaagtgaatgtttactga

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_8|224_aa
MWDALELPRDLLNGFDQNAHNDMDNKSQAEVVSDGDEELIGNWSKVASAVAEREQCRAWA
MASEGASPEPWQLPCGVEPASAQKSRIGVWEPLSRFQKLYGNAWMPRQKFPAGVGPSWRT
SARAVQKGNVGLEPPHRVPTGAPPSGAVRRGLPSSRPQNGRSTDSLHHVPRKATDIQHQP
VKAAGRTAVPCKATGVELSKTMGIHLLHQHDLGVFTQCLYPHFI

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_8|675_bp
atgtgggacgctttggaacttcctagagacttgttgaatggctttgaccaaaatgctcat
aatgatatggacaataaaagccaagctgaggtggtttcagatggagatgaggaactcatt
gggaactggagcaaagttgcttcagctgtggctgaaagggaacaatgtagagcttgggcc
atggcttcagagggtgcaagccccgagccttggcagcttccatgtggtgttgagcctgcg
agtgcacagaagtcaagaattggggtttgggaacctctgtctagatttcagaagttgtat
ggaaatgcctggatgcccaggcagaagtttcctgcaggagtggggccctcatggagaacc
tctgctagggcagtgcagaagggaaatgtggggttggagcccccacacagagttcctact
ggggcaccgcctagtggagctgtgagaagagggctaccatcctccagaccccagaatggt
agatccactgacagcttgcaccatgtgcctagaaaagccacagacattcaacaccagccc
gtgaaggcagctgggaggacggctgtaccctgcaaagccacaggggtggagctgtccaag
accatgggaatccacctcttgcatcagcatgacctgggtgtatttacccaatgcctgtac
cctcattttatctag

>gi568815596r:27681618_27990345|GENSCAN_predicted_peptide_9|86_aa
MVPASASGKDLSKLTIMAGGEGRAGTSQDESGSESKRSTSQFRLATFQRLHHHMWLAATI
LDSTDLQETLIRKEGNKGNEGKVKYA

>gi568815596r:27681618_27990345|GENSCAN_predicted_CDS_9|261_bp
atggtgccagcatctgcttctggcaaagacctcagcaagcttacaatcatggcaggaggt
gaagggagagcaggcacatcacaagatgagagtggcagtgagagcaagaggagcacatct
caattcagactagccacatttcaaagactccatcaccacatgtggctagcagcgactata
ttggacagcacagatctacaggaaacactgattaggaaagaaggaaacaaagggaatgaa
gggaaggttaaatatgcctag