GENSCAN 1.0 Date run: 3-Nov-116 Time: 21:17:50 Sequence gi568815596r:174974612_175230209 : 255598 bp : 37.83% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 3812 3944 133 1 1 68 95 81 0.694 7.16 1.02 Intr + 26746 26833 88 2 1 60 82 38 0.003 -1.49 1.03 Term + 31133 31262 130 2 1 71 49 158 0.033 6.87 1.04 PlyA + 32222 32227 6 1.05 2.00 Prom + 41769 41808 40 -4.75 2.01 Init + 42971 43090 120 1 0 66 65 77 0.693 3.44 2.02 Term + 43460 43798 339 1 0 -16 44 277 0.438 6.45 2.03 PlyA + 45720 45725 6 1.05 3.08 PlyA - 46324 46319 6 1.05 3.07 Term - 53777 53605 173 0 2 65 49 151 0.400 5.91 3.06 Intr - 56362 56062 301 1 1 35 51 150 0.257 1.38 3.05 Intr - 62827 62775 53 2 2 68 99 33 0.206 0.11 3.04 Intr - 64911 64780 132 1 0 72 49 118 0.454 6.00 3.03 Intr - 68538 68328 211 0 1 14 20 131 0.183 -3.54 3.02 Intr - 69457 69009 449 2 2 53 86 210 0.117 9.44 3.01 Init - 83331 83274 58 0 1 69 71 52 0.175 3.12 3.00 Prom - 92210 92171 40 -4.55 4.06 PlyA - 92398 92393 6 1.05 4.05 Term - 100224 99998 227 1 2 80 38 187 0.883 8.86 4.04 Intr - 106154 106049 106 2 1 49 73 86 0.003 2.07 4.03 Intr - 118656 118450 207 0 0 66 80 234 0.775 18.75 4.02 Intr - 122982 122833 150 0 0 50 96 119 0.937 8.34 4.01 Init - 133031 132903 129 2 0 104 27 83 0.856 4.00 4.00 Prom - 134795 134756 40 -2.65 5.18 PlyA - 134870 134865 6 1.05 5.17 Term - 136682 136638 45 2 0 109 49 35 0.836 -2.07 5.16 Intr - 137043 136957 87 0 0 40 103 49 0.202 0.85 5.15 Intr - 139497 139383 115 2 1 91 63 38 0.321 1.13 5.14 Intr - 140257 140079 179 1 2 71 75 106 0.482 5.40 5.13 Intr - 143507 143379 129 2 0 65 72 115 0.985 7.57 5.12 Intr - 143758 143640 119 2 2 71 53 92 0.973 3.26 5.11 Intr - 146929 146833 97 1 1 66 53 121 0.879 5.06 5.10 Intr - 155596 155527 70 0 1 75 90 46 0.280 1.77 5.09 Intr - 193297 193210 88 2 1 62 59 66 0.100 -0.79 5.08 Intr - 193827 193630 198 1 0 68 81 167 0.566 12.40 5.07 Intr - 195600 195473 128 2 2 32 50 68 0.131 -3.20 5.06 Intr - 204639 204446 194 0 2 122 89 189 0.864 19.77 5.05 Intr - 205567 205487 81 1 0 79 75 47 0.727 1.42 5.04 Intr - 206855 206744 112 1 1 113 78 43 0.966 5.26 5.03 Intr - 207462 207371 92 0 2 79 45 96 0.508 2.27 5.02 Intr - 209718 209541 178 2 1 49 34 229 0.518 12.60 5.01 Init - 229717 229641 77 1 2 58 94 34 0.086 1.63 5.00 Prom - 239000 238961 40 -3.75 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Sngl + 108447 109352 906 2 0 86 39 217 0.966 12.59 S.002 Sngl + 215522 216229 708 1 0 70 47 228 0.958 12.87 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596r:174974612_175230209|GENSCAN_predicted_peptide_1|116_aa MAAQGIKQRMRSLCVWALSDCVGHMPMKPALIQVKHFYKPTYYTGHSYGKSENFLTTSQR ICHCYLIAPKDVHRLTVAGAGDLKLQGSGRNRGTESCIPLRLDLGAASSSDEIDTH >gi568815596r:174974612_175230209|GENSCAN_predicted_CDS_1|351_bp atggcagcacagggcattaaacaaagaatgaggtctctctgcgtgtgggccctgagtgac tgcgtaggtcacatgccaatgaagccagccctgattcaggttaaacatttctacaaacct acttactacacaggacattcctatgggaaatcagaaaatttcctaactacatcacaaaga atatgccattgctatttaattgctccaaaagatgtccataggctcactgtggctggagcc ggtgacctgaagctgcagggctctggtaggaacagaggcactgaaagctgcattcctctc cgtttggacttaggagctgctagtagttctgatgaaattgacacacattag >gi568815596r:174974612_175230209|GENSCAN_predicted_peptide_2|152_aa MPASNTLNQMQEQRNDLKLEFIFKREAEHKSLENLQPGTEISEVVRENPRCPGRSLLQDR LPIDKLYYGTAERNVGLELPHRVLTKALPSGAVGKGQLPSRPKNGRGTSSLQPQCGKAIG TKLRPMRAYTGAVPCNATGVELPKALRVHPSQ >gi568815596r:174974612_175230209|GENSCAN_predicted_CDS_2|459_bp atgcctgcttctaacaccctaaatcagatgcaggagcaaaggaacgacttaaagttggaa ttcatatttaaaagggaagcagagcataaaagtttggaaaatttgcagcctggtactgag atttcagaggtggtacgggaaaaccctaggtgcccaggcagaagcctgctgcaggacaga ttacccatagataaactctattacggcactgctgaaagaaatgtagggttagaactgcca cacagagtcctcaccaaggcactgcctagtggagctgtgggaaagggacagctgccttcc agacccaagaatggtagaggcaccagcagtttgcagcctcagtgtggaaaggccataggc accaagctccgacccatgagagcatacacaggagctgtaccctgcaatgccacaggggtg gagctgcccaaggccttgagagtccacccctcacagtaa >gi568815596r:174974612_175230209|GENSCAN_predicted_peptide_3|458_aa MSLERDPFRDTKAQQLEVEVLEALAWAIRQENNIKSIQIGKEEVKLSLFADDMILYLENP IISAPKLLELTSNFSKVSGYKINVQKSQAFLYTNNRQAESQIMNELPFTIATKRIKYLGI QLTRDVKDLFKENYKPLIKEIRENTNKWKKIPSSWIGRINIMKTTILPKKKILGNTIQDI GMGKAFMTKTPKATATKAKIDKWDPIKLKSFCTAKKAIIRVNRQPTEWEKIFAIYQSDKG VLLTLVFNHWSRGVIETVLSGSVVTEGKAPSPRSLQSHQGSPGDEKAKVQRGRDLPKARE QGHTKHFSTEEQNFCDSETGCTIDTRALRGLHLILRAKTADRQLLKLWPCEALLGLWVTL PPSFPQPSSMDYVSREAAWAALLSLLCLLRPLTTASLLPNTWAGPRLLPRPSMAMATGIS NTESRLNFDHVGTILKVRPVGNNLSWETVMPLSTPTGL >gi568815596r:174974612_175230209|GENSCAN_predicted_CDS_3|1377_bp atgagcctagaaagagaccctttcagagacacaaaagcacagcagcttgaagttgaagta ttggaagcgctggcctgggcaatcaggcaagagaacaacataaagagtattcaaatagga aaagaggaagttaagttgtctctgtttgcagatgacatgattttatatttagaaaacccc atcatctcagccccaaaactccttgaactgacaagcaacttcagcaaagtctcaggatac aaaatcaatgtgcaaaaatcacaagcattcctttacaccaacaataggcaagcagagagc caaatcatgaatgaacttccattcacaatcgctacaaagagaataaaatacctaggaata cagctaacaagggatgtgaaggacctcttcaaggagaactacaaaccactgatcaaggaa ataagagagaacacaaacaaatggaaaaagattccatcctcatggataggaagaatcaat atcatgaaaacgaccatattgcccaagaaaaaaatcctaggcaataccattcaggacata ggcatgggcaaagccttcatgacaaaaacgccaaaagcaactgcaacaaaagccaaaatt gacaaatgggatccaattaaactaaagagcttctgcacagcaaaaaaagctatcatcaga gtgaacaggcaacctacagaatgggagaaaatttttgcaatctaccaatctgacaaaggg gtgctgttgacgttggtatttaatcattggtccagaggagttattgaaactgtgctaagt ggcagtgtggtcacagaaggaaaagccccaagtccacgaagtttgcagtctcatcaagga agccctggggatgaaaaagccaaggttcagagaggtagagacttgcccaaggccagagag cagggacacacaaaacacttcagcactgaggaacagaatttctgtgattctgagactgga tgcacaattgacaccagggctcttaggggtctccacctcatccttagggccaagacagca gacagacagctgctaaagctgtggccctgtgaagctcttcttggcctgtgggtcactctt cctccctctttcccacaaccgtcttctatggactatgtcagcagagaggctgcctgggca gctctgctgtccttgctgtgtctcttacggcctttgaccacagcttctctcttgcccaac acttgggcaggaccacggcttcttccacgtccttccatggctatggccacaggcatcagc aatacggaaagtagactcaactttgaccacgtgggcacaatcctgaaagtgagaccagtt gggaacaatctgtcctgggaaacagtcatgcctctttccactcccacgggactttag >gi568815596r:174974612_175230209|GENSCAN_predicted_peptide_4|272_aa MAAAQSSFGSASEGDRGKRGRGRPWGEGEGDRGEREREREPQNRLKAALTQQHPPVTNGD TVKGHGSGLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGRRRRAANEDPDE KRRKFLERNRAAASRCRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL AHKDCPVTAMQKKSGYHTADKDDSSEDISVPSSPHTEAIQHSSVSTSNGVSSTSKAEAVA TSVLTQMADQSTEPALSQIVMAPSSQSQPSGS >gi568815596r:174974612_175230209|GENSCAN_predicted_CDS_4|819_bp atggcggcagcacagtccagctttggctcggcatcagagggagaccgtggaaagagaggg agagggagaccatggggagagggagagggagaccgtggggagagggagagggagagggag ccacaaaacagattaaaagctgctttgacccagcaacatcctccagttaccaatggtgat actgtcaaaggtcatggtagcggattggttaggactcagtcagaggaatctcgaccgcag tcattacaacagccagccacatccactacagaaactccggcttctccagctcacacaact ccacagacccaaagtacaagtggtcgtcggagaagagcagctaacgaagatcctgatgaa aaaaggagaaagtttttagagcgaaatagagcagcagcttcaagatgccgacaaaaaagg aaagtctgggttcagtctttagagaagaaagctgaagacttgagttcattaaatggtcag ctgcagagtgaagtcaccctgctgagaaatgaagtggcacagctgaaacagcttcttctg gctcataaagattgccctgtaaccgccatgcagaagaaatctggctatcatactgctgat aaagatgatagttcagaagacatttcagtgccgagtagtccacatacagaagctatacag catagttcggtcagcacatccaatggagtcagttcaacctccaaggcagaagctgtagcc acttcagtcctcacccagatggcggaccagagtacagagcctgctctttcacagatcgtt atggctccttcctcccagtcacagccctcaggaagttga >gi568815596r:174974612_175230209|GENSCAN_predicted_peptide_5|662_aa MAGLEITSAAALEIANTCPYQRACFSEKPDDDFGAQPNKNLGFASSFGIVDALESIRQDI HVHHCGGTKRWRKEPNDNPFIALDTPQSYFTEEENDQQVNFYYREAATDKRPNLTREEAG EEPTSPVTQYLQPRSPEECKMFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGE GSTVFNGAQNGVSQLIQREFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI IGYARTKLGRCIMEQDRQRRGLQEVSCVCKEKTVKNFRTLGDIEECKKLLPALRAPCPIM SARVLFDARPLYPPCRRPAFFSLSLTESPDSEALPQKEGKKGRVGEGEGRQKEALGAIVA VLPPRRPARCGLWEPDWLGRTVRQYKDLWNMSDDKPFLCTAPGCGQRFTNEDHLAVHKHK HEMTLKFGPARNDSVIVADQTPTPTRFLKNCEEVGLFNELASPFENEFKKASEDDIKKMP LDLSPLATPIIRSKIEEPSVVETTHQDSPLPHPESTTSDEKEVPLAQTAQPTSAIVRPAS LQVPNVLLTSSDSSVIIQQAVPSPTSSTVITQAPSSNRPIVPVPGPFPLLLHLPNGQTMP VAIPASITSSNVHVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMWKIGVLHLKLDV II >gi568815596r:174974612_175230209|GENSCAN_predicted_CDS_5|1989_bp atggctggcctggagattacatcagcagcagcactggagatcgccaacacatgtccctac caaagagcatgtttcagtgagaaaccagatgatgattttggagcacagcctaataagaac ctggggtttgcctcttctttcggcattgttgatgctcttgagagcatcaggcaggacatt catgtgcaccattgtggcggcacgaaaagatggcggaaagagccaaacgacaaccctttc attgctcttgacaccccacagtcctatttcacagaggaagagaatgaccagcaagtcaac ttctactacagagaagcagcaactgataaaaggccaaatcttacaagagaggaagcggga gaggagcccacgtcgcctgtcacccaatatctccagccgcgcagtcccgaagagtgtaag atgttcgcctgcgccaagctcgcctgcaccccctctctgatccgagctggatccagagtt gcatacagaccaatttctgcatcagtgttatctcgaccagaggctagtaggactggagag ggctctacggtatttaatggggcccagaatggtgtgtctcagctaatccaaagggagttt cagaccagtgcaatcagcagagacattgatactgctgccaaatttattggtgcaggtgct gcaacagtaggagtggctggttctggtgctggtattggaacagtctttggcagccttatc attggttatgccagaactaagttgggtagatgcatcatggaacaagacaggcaaagaaga ggtctacaagaagtttcctgcgtttgtaaagagaagactgtaaagaattttaggactctt ggggatattgaggaatgcaaaaaactgcttcccgcccttcgggctccttgtccaatcatg agcgcccgagtgctctttgatgcccgtcccctctacccgccctgccgaagacccgccttc ttctccttaagcctgacggaatcacctgactcggaggcgctccctcagaaggaaggcaag aaggggcgtgtgggtgaaggggaggggcgccagaaggaagcccttggggcgattgtggct gtgctgccacctcggcggcccgcgcggtgtgggctttgggaacctgactggctgggccgg accgttaggcaatacaaggacctgtggaatatgagtgatgacaaaccctttctatgtact gcgcctggatgtggccagcgttttaccaacgaggatcatttggctgtccataaacataaa catgagatgacactgaaatttggtccagcacgtaatgacagtgtcattgtggctgatcag accccaacaccaacaagattcttgaaaaactgtgaagaagtgggtttgtttaatgagttg gcgagtccatttgagaatgaattcaagaaagcttcagaagatgacattaaaaaaatgcct ctagatttatcccctcttgcaacacctatcataagaagcaaaattgaggagccttctgtt gtagaaacaactcaccaggatagtcctttacctcacccagagtctactaccagtgatgag aaggaagtaccattggcacaaactgcacagcccacatcagctattgttcgtccagcatca ttacaggttcccaatgtgctgcttacaagttctgactcaagtgtaattattcagcaggca gtaccttcaccaacctcaagtactgtaatcacccaggcaccatcctctaacaggccaatt gtccctgtaccaggcccatttcctcttctgttacatcttcctaatggacaaaccatgcct gttgctattcctgcatcaattacaagttctaatgtgcatgttccagctgcagtcccactc gttcgaccagtcaccatggtgcctagtgttccaggaatcccaggtccttcctctccccaa ccagtacagtcagaagcaaaaatgtggaaaataggagtattacatctgaaactagatgtg atcatctga