GENSCAN 1.0	Date run:  5-Nov-116	Time: 13:57:36

Sequence gi568815596r:171417273_171617716 : 200444 bp : 40.74% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2985   3128  144  2  0   79  103    73 0.745   8.08
 1.02 Intr +   6722   7196  475  1  1   42   64   303 0.139  15.01
 1.03 Term +  14639  14799  161  0  2   61   52   127 0.625   3.52
 1.04 PlyA +  15149  15154    6                               1.05

 2.00 Prom +  16538  16577   40                             -10.94
 2.01 Init +  17306  17431  126  1  0   82   60   160 0.771  10.82
 2.02 Intr +  17811  17914  104  2  2   75   93    76 0.880   4.85
 2.03 Intr +  26251  26341   91  1  1   95   83   -17 0.023  -2.42
 2.04 Intr +  31409  31545  137  1  2  112   68    45 0.039   3.35
 2.05 Intr +  32607  32685   79  0  1   80   74    43 0.049   0.73
 2.06 Intr +  40699  40803  105  0  0   95   80    99 0.901   9.29
 2.07 Intr +  41100  41205  106  2  1   87   80    32 0.859   1.17
 2.08 Intr +  51616  51758  143  2  2  111   59    65 0.822   5.05
 2.09 Intr +  56594  56703  110  1  2   83   89    43 0.814   2.06
 2.10 Intr +  59588  59678   91  2  1   92  106    77 0.997   8.98
 2.11 Intr +  62766  62921  156  2  0   68   89   122 0.998   9.59
 2.12 Term +  74150  74566  417  1  0   92   38   366 0.999  26.29
 2.13 PlyA +  74926  74931    6                               1.05

 3.00 Prom +  75535  75574   40                              -8.85
 3.01 Init +  78475  78759  285  0  0   64   55   183 0.152   9.72
 3.02 Intr +  96870  96953   84  2  0  117   99   -16 0.151   1.50
 3.03 Term +  99449  99574  126  1  0   -5   54   205 0.239   5.10
 3.04 PlyA +  99670  99675    6                              -4.33

 4.02 PlyA -  99987  99982    6                               1.05
 4.01 Sngl - 100444  99998  447  1  0   95   39   813 0.859  73.07
 4.00 Prom - 103108 103069   40                              -9.25

 5.00 Prom + 103874 103913   40                              -9.05
 5.01 Init + 105280 105487  208  0  1   90   33   384 0.259  30.13
 5.02 Intr + 105780 106040  261  1  0   45   38   153 0.159   2.54
 5.03 Intr + 106887 106942   56  1  2   15   41   124 0.054  -1.82
 5.04 Intr + 112626 112879  254  2  2   49   51   216 0.085   9.31
 5.05 Intr + 124329 124521  193  0  1   73   82    96 0.161   6.07
 5.06 Intr + 130019 130054   36  1  0   75  100    33 0.117   0.74
 5.07 Intr + 136074 136228  155  2  2   83   95    45 0.336   2.65
 5.08 Term + 137252 137555  304  2  1   62   38   176 0.650   3.66
 5.09 PlyA + 138665 138670    6                               1.05

 6.06 PlyA - 139784 139779    6                               1.05
 6.05 Term - 140339 140154  186  2  0   57   38   104 0.111  -1.19
 6.04 Intr - 141613 141525   89  2  2   77   72    72 0.257   3.27
 6.03 Intr - 143898 143725  174  1  0   53   81   102 0.382   4.99
 6.02 Intr - 144245 143954  292  2  1   69   61   230 0.166  14.18
 6.01 Init - 145233 145141   93  0  0   79   67    40 0.028   1.50
 6.00 Prom - 148507 148468   40                              -7.95

 7.00 Prom + 150284 150323   40                              -5.45
 7.01 Init + 154790 154904  115  1  1   41   76    73 0.336   1.82
 7.02 Intr + 155480 155682  203  0  2   22  100   121 0.357   4.78
 7.03 Intr + 156110 156242  133  1  1   60   50    48 0.206  -2.50
 7.04 Intr + 160548 160690  143  1  2    1   98   168 0.364   8.25
 7.05 Intr + 169013 169139  127  1  1   36   25   132 0.474   1.03
 7.06 Intr + 169809 169927  119  1  2   62   54    64 0.546  -0.34
 7.07 Term + 169970 170302  333  1  0  -42   38   355 0.391  11.13
 7.08 PlyA + 170906 170911    6                               1.05

 8.00 Prom + 172259 172298   40                              -7.35
 8.01 Init + 173535 173624   90  2  0   36   56   112 0.160   3.34
 8.02 Intr + 182599 182716  118  0  1   74   75    88 0.747   5.22
 8.03 Intr + 190248 190354  107  1  2   93   82    70 0.114   5.91
 8.04 Term + 193739 193771   33  1  0   81   43    56 0.088  -2.99
 8.05 PlyA + 195542 195547    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  30815  30654  162  2  0  110   38    96 0.869   3.75
S.002 Term +  63702  63842  141  2  0   78   42   132 0.885   4.55
S.003 Init + 112632 112879  248  2  2   53   51   208 0.839  10.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_1|259_aa
MVLALELVAFDSWYDALPARLFFCLFSREWHGYAERQEEEKEDEADMVPQDLVPCTPAAP
AVAKRGQGTAQAMASEGTSSKPWQLPRVIGPAGAQKSRTEFEEPLPRFQKMYRNAWMSKQ
KFAAWVEPSWRTSAMAVRKGNVGLEPPHRVPTGTLPSGDVRRGPPSSRLQNCRSTDSLHH
VPGKASDTLHQPMKAARTGAVPCKATVWTPEPTVGVTCDMPGPAASGARSQLLCRHLEQP
AGYHTTLHSPAQTPSPARG

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_1|780_bp
atggtgctggcactagaacttgtagcttttgactcctggtatgatgctcttcccgctaga
ctattcttttgtcttttcagtagagagtggcatggttatgcagagagacaagaagaagaa
aaagaagatgaggcagacatggtgcctcaggacttggtgccctgcaccccagctgctcca
gctgtggctaaaaggggccaaggtacagcacaggccatggcttcagaggggacaagctcc
aagccttggcagcttccacgtgttattgggcctgcgggtgcacagaagtcaagaactgag
tttgaggaacctctgcctagatttcagaagatgtatagaaatgcctggatgtccaagcag
aagtttgctgcatgggtggagccctcatggagaacctctgctatggcagtgcggaaggga
aatgtgggattggagcccccacacagagtccctactgggacactgcctagtggagatgtg
agaagagggcccccatcctccagactccagaactgtagatccactgacagcttgcaccat
gtgcctggaaaagcctcagacactctacaccagcccatgaaagcagccaggacaggggct
gtaccctgcaaagccacagtctggactccagagcccactgtgggagtcacttgtgacatg
cctggtccagccgcaagcggtgcacggagccagctcctgtgccggcacttggagcaacca
gctggataccacacaactctgcactcaccagctcagacaccctctcctgccaggggctga

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_2|554_aa
MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQI
FGNVTDATLSHGILIVMYSSGLVRLYSFQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPF
GIPCNIKITDMPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGVFHICALKDNSLAKN
GIQEMDCCSLESDWIYFHPDASGRIIHVGPNQVKVLKLTEIENNSSQHQISEDFVILANR
ENHKTFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVGITR
VRNTTDAAGIVLKELKRQSSLGVFHLLVAVDGINALWGRTALKREDKCPIAPEELALVHN
LRKMMKNDWHGGAIVLTLNQTGSLFKPRKAYLLQELLVKEGFDALDPFIPILVSNYNPKE
FESRIQYCLENNWL

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_2|1665_bp
atgggcccgacccggaagcccaacgtgtgcagccggctgagtcgccgggcgctgggctgc
ttctcgcgcgacgcaggcgtggtgcagaggaccaacctgggcatcctgcgggcgctggtg
tgccaggaaagtactaaatttaagaatgtctggacaactcattccaggtcacctatagcc
tatgagagaggaagaatatattttgacaattatcggcgctgtgtcagcagtgttgcatct
gagccaagaaaactttatgaaatgccaaaatgttccaaatcagaaaaaatagaggatgct
ttattatgggaatgcccagtgggagatatacttcccaattcatcagattataagtcctca
ctcatagcactgactgctcataattggctacttcgtatatcagcaactacgggaaaaatc
cttgagaaaatatatcttgcaccttattgcaaattcagatacttgagctgggacactcct
caagaagtcattgcagttaagtcagctcagaacagaggctcagcagtggcccggcagatt
tttgggaacgttacagatgctaccttgtctcatggaatactgattgtgatgtacagctca
ggactggtcagactctatagcttccaaaccatcgctgaacagttcatgcaacagaaactt
gacttagggtgtgcatgcagatggggtgggactactggaactgtaggagaggctcctttt
ggcattccttgtaatattaaaatcacagacatgccaccactgctctttgaggtgtcatcc
ctggagaatgcttttcagattggaggccatccttggcactacatcgtcacacctaataag
aagaaacagaaaggagttttccatatttgtgccctaaaagacaattccctggcaaaaaat
gggatccaagaaatggattgttgttctctagaatctgactggatctatttccatcctgat
gcttctggtagaataatacatgttggtccaaatcaagtcaaagttttgaagctaactgaa
atagaaaataatagttctcagcatcagatctctgaagattttgtcattttggccaacagg
gagaaccataaaactttcaaaattgtggactatgaagatgagttagatttgctttctgtg
gtagctgttactcaaatagatgctgaaggaaaagctcacctggatttccactgtaatgaa
tatggaactttacttaaaagcattccactagtggagtcatgggatgtgggcataacacgg
gtgaggaacaccacagatgcagctggaattgtgctgaaagagctaaagaggcaaagttct
ttgggtgtttttcacctgctggtggccgtggatggaatcaatgctctttggggaaggact
gctctgaaaagagaagataaatgcccgattgccccagaggaattagcacttgttcacaac
ctgaggaaaatgatgaaaaatgattggcatggaggtgccattgtgttgactttgaaccag
actgggtctctctttaagccccggaaagcctatctgctccaggagttgctggtaaaggaa
ggatttgatgccctggatccctttattcccatcctggtttccaactataacccaaaggaa
tttgaaagtcgtattcagtattgtttggaaaacaattggctttaa

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_3|164_aa
MCKAAGNAPLGTGLFQDITEDRKPGDHSSVELLGLTISITKEGTWFEMVSDSIIPKVGPV
SQERGLDLFKEPGQAQWLTPVIPAMWESEVAGSLEGTVNIKNLLPSWHFVSVCCTISAQN
NFQRCNSLKGTRQRVVKNQGQAQQEANATHRRVEASGDGVTGPL

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_3|495_bp
atgtgcaaagcagctggaaatgccccacttgggactggactgtttcaggatataactgag
gacaggaaacctggggatcacagttcggtggagctccttggcctcacgatcagcatcaca
aaggaaggaacctggtttgaaatggtttctgacagcataattcctaaagttgggcctgta
tctcaggaaagaggtctagatctcttcaaagaacctggacaggcacagtggctcacgcct
gtaatcccagcaatgtgggagtccgaggtggctggatcacttgaggggactgtgaacata
aaaaacctccttccttcatggcattttgtgtctgtgtgttgtactatatctgctcaaaac
aatttccagaggtgcaacagccttaagggaactcggcaaagagtggtgaagaaccaggga
caagcacagcaggaagccaatgccactcatagacgcgtagaagcaagtggtgatggtgtt
actggacccctgtga

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_4|148_aa
MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLEQPMQLYSARQRRRLNRGLRRKQHSLL
KRLRKAKKEAPPMEKQEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLG
EFSITYKPVKHGRPGIGATHSSRFIPLK

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_4|447_bp
atggcagaagtagagcagaagaagaagcggaccttccgcaagttcacctaccgcggcgtg
gacctggaccagctgctggacatgtcctacgagcagctggagcagccgatgcagctgtac
agtgcgcgccagcggcggcggctgaaccggggcctgcggcggaagcagcactccctgctg
aagcgcctgcgcaaggccaagaaggaggcgccgcccatggagaagcaggaagtggtgaag
acgcacctgcgggacatgatcatcctacccgagatggtgggcagcatggtgggcgtctac
aacggcaagaccttcaaccaggtggagatcaagcccgagatgatcggccactacctgggc
gagttctccatcacctacaagcccgtaaagcacggccggcccggcatcggggccacccac
tcctcccgcttcatccctctcaagtaa

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_5|488_aa
MEGYWRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQ
GIGTGTSWGGRTGGASKTQKLEPGRDAGAPRSRAAAAHAPRKVAPVDRACAIGGAETLSP
QPFAELASRLQMRRGRQRGKDCRSENLPVFVTSSALAFKGFPGVRSASGCEIGIRVSMNV
TLLGNRIFADVNYGSQDEVTLDLDWALNPMIGALIRERRRRFETKTHREEGYVKTGRDWS
DVATSQGKWRIVGSPRGRRGLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNV
NNIANMYSLHSWVGLIAVICYLLQEPDCNGLKREQKLLSGFSVFLLPWAPLSLRAFLMPI
HVYSGIVIFGTVIATALMGLTEKLIFSLRDPAYSTFPPEGVFVNTLGLLILVFGALIFWI
VTRPQWKRPKEPNSTILHPNGGTEQGARGSMPAYSGNNMDKSDSELNSEVAARKRNLALD
EAGQRSTM

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_5|1467_bp
atggagggctactggcgcttcctggcgctgctggggtcggcactgctcgtcggcttcctg
tcggtgatcttcgccctcgtctgggtcctccactaccgagaggggcttggctgggatggg
agcgcactagagtttaactggcacccagtgctcatggtcaccggcttcgtcttcatccag
ggcatcggtactggcacctcctgggggggacgcactggaggggcctccaagacccagaaa
cttgagcccgggcgcgatgccggagcgccgcgcagtcgggccgctgcagcccacgcgccc
cggaaagtcgcccctgtggaccgagcctgcgcgatcgggggcgcggaaacactttcgcct
cagccttttgctgaacttgcttccaggctgcagatgaggaggggaaggcagcggggaaaa
gattgccggagcgagaatttgcccgtatttgtaacatcctcggccctggcattcaaaggc
ttccctggtgtgagatcggcatcagggtgtgagatcggcatcagggtatccatgaatgtg
accttacttggaaataggatctttgcagatgttaactatggatctcaagatgaggtcacc
ctggatttagactgggctctaaatcctatgattggtgcccttataagagaaaggagaagg
agatttgagacaaagacacacagagaagaaggctatgtgaagacaggcagagattggagt
gatgtggccacaagccaaggaaaatggagaattgttggctcccctagaggccgaagagga
ctgccgtggacctggaaatgcagcaagctcctgatgaaatccatccatgcagggttaaat
gcagttgctgccattcttgcaattatctctgtggtggccgtgtttgagaaccacaatgtt
aacaatatagccaatatgtacagtctgcacagctgggttggactgatagctgtcatatgc
tatttgttacaggagccagactgcaatggattgaagagggagcagaagcttctttcaggt
ttttcagtctttctgcttccatgggctccgctttctctccgagcatttctcatgcccata
catgtttattctggaattgtcatctttggaacagtgattgcaacagcacttatgggattg
acagagaaactgattttttccctgagagatcctgcatacagtacattcccgccagaaggt
gttttcgtaaatacgcttggccttctgatcctggtgttcggggccctcattttttggata
gtcaccagaccgcaatggaaacgtcctaaggagccaaattctaccattcttcatccaaat
ggaggcactgaacagggagcaagaggttccatgccagcctactctggcaacaacatggac
aaatcagattcagagttaaacagtgaagtagcagcaaggaaaagaaacttagctctggat
gaggctgggcagagatctaccatgtaa

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_6|277_aa
MCSWTAPVSSILTHPNWPVLRMAGLTGCASVAMKKKIEHNCQQVIAQTFTTRGDLLEIPL
TDPGLNLYTDGSSFVEKGLRKAGYAVVSDNGILESNPLTPGTSAQLAELIALTWAPELEE
GKRVKRKKAIWREREFLTSEGTPIKHQEAIRRLLLAVQKPKEVAVLHCRGHRKGTAKWIL
KPKEPQGVKWPEVTKFVTSPVAPIDNITIVEPKIGQHSLHETTQVKERKCFRGQVPFDTS
STGSRTLLMTVIQKVYSFEFLNKRFERKGFNVDSDEC

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_6|834_bp
atgtgctcctggaccgctcccgtatcgagcatcctcacccacccaaattggcctgtcctt
agaatggctggccttacgggttgtgcctctgtagcaatgaagaaaaaaatagaacataac
tgtcaacaagtaattgctcaaaccttcaccactcgaggggaccttctagagattcccttg
actgatcctggcctcaacttgtatactgatggaagttcctttgtagaaaaaggacttcga
aaagcggggtatgcagtggtcagtgataatggaatacttgaaagtaatcccctcactcca
ggaactagcgctcagctggcagaactaatagccctcacttgggcaccagaattagaagaa
ggaaaaagggtaaaaaggaaaaaggcaatatggagagaaagggaattcctaacttccgag
ggaacacctatcaaacatcaggaagccattaggagattattattagctgtacagaaacct
aaagaggtggcagtcttacactgtcggggtcatcggaagggaactgccaagtggatattg
aagccaaaagagccacaaggagtcaagtggccagaggtcacaaaatttgtgacttcccca
gttgctcctatagataacatcactattgtagaacctaagattggtcagcacagcttacat
gaaaccacgcaagtaaaggaaagaaagtgctttagagggcaggttccatttgacacaagc
agcacaggaagccgtacacttttgatgacagtaattcaaaaagtatattcatttgagttt
ctcaataaacgctttgagagaaaaggctttaatgttgattcagatgagtgttaa

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_7|390_aa
MLKSQETKEGGQQIQCVSKGYFIGELTDRSVVLGSSKTVSSHLYKLSIGSSATLNAHYLC
KQKLQLSELRGDVIQWLEELVKMHGLDTYLHHVLPGGLADVIKDLKEHICIGKSVMKQMG
MMNTKFREVETVKRRKGIQLRGHKGFTCLDENVKSTIKTEVLPESGPNPDLKRGLSDLVQ
ERIWGESIEPSESKFIKKPLLEELTGSQQDRSKDRNQPHPIPIGNLLMGDKGSLAQVREN
VIRQNDEHGKRGEAPDICSLGLLENMGFFLWPRICESMRKECPTNVNHGKTGRVYSVPQR
AVGIVINKQAKGKILAKKINVHIEHVKHSKIPDSFLKHMKENDQKKKEAKEKATRVQLKC
QPAPPRETHFVRTSGKKPELLEPIPYEFMA

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_7|1173_bp
atgctgaagagccaagaaaccaaagaaggtggccaacaaatccagtgtgtcagtaaaggg
tattttattggggaacttacagacagaagcgtggtcttgggcagcagcaagacagttagt
tctcacctatataagctgagtattggatccagtgccacattaaatgcccattatttgtgt
aagcagaagttgcagctttctgagcttagaggcgatgtcatccagtggttggaggagttg
gtcaaaatgcatgggttggacacctacctccaccatgtattgcctgggggcttggcagat
gtaattaaggacctcaaggaacacatatgtatcggcaaaagcgtaatgaaacaaatggga
atgatgaacaccaaatttagagaagtggaaactgtaaagagaaggaagggaatacagctg
agggggcacaaaggcttcacctgtttggatgaaaatgtgaaaagcacaatcaaaacagaa
gtgttaccggaaagcggtcccaatccagacctcaagagagggttgtcggacctcgtgcaa
gaaagaatttggggtgagtccatagagccgagtgaaagcaagtttattaagaagccactc
ttggaagaactaactggatctcaacaggacagatccaaagaccgaaaccagccccacccc
atccccataggaaatcttcttatgggggataaagggtcacttgctcaagtcagagaaaat
gtaattcgccaaaatgatgaacacgggaaaagaggagaggcaccagatatatgttctcta
ggccttttagaaaacatggggtttttcctttggccacgtatatgtgaatctatgagaaag
gaatgccccacaaatgttaaccatggcaaaactgggagagtctacagtgttccccagcgt
gctgttggcattgttataaacaaacaagctaagggcaagattcttgccaagaaaattaat
gtgcatattgagcatgttaaacattctaagatccctgatagtttcctgaaacacatgaag
gaaaatgatcagaaaaagaaggaagccaaagagaaagctacccgggttcagctgaagtgc
cagcctgctccacccagagaaacacactttgtgagaaccagcgggaagaagcctgagctg
ctggaacctattccctatgaattcatggcttaa

>gi568815596r:171417273_171617716|GENSCAN_predicted_peptide_8|115_aa
MIAAPAAHSSLVRAPEDPAKPCPDSSPTETRTWTNTSGNGNAYPKERLLQFKAKVLLYWI
AAATQSKNKGREVKSFPVVEATPVFALDGGKLKLLPENDGESGPNAQFELTQLPP

>gi568815596r:171417273_171617716|GENSCAN_predicted_CDS_8|348_bp
atgatagcagcacctgctgctcatagcagccttgtgagagccccagaagacccagccaag
ccatgtccagattcttcacccacagaaactaggacctggactaacacatcaggcaatggc
aatgcctaccctaaagaacgacttttacagttcaaggccaaagtccttctgtattggata
gcagcagcaacccaaagcaagaacaaagggagggaggttaagagcttccctgttgtagag
gctactccagtttttgcccttgatgggggtaagctaaagctgcttcctgagaacgatggt
gagagtggcccaaatgcccagtttgagctgactcagctgccgccatga