GENSCAN 1.0 Date run: 5-Nov-116 Time: 13:13:21 Sequence gi568815596r:150369990_150587417 : 217428 bp : 38.60% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.00 Prom + 6543 6582 40 -1.95 1.01 Init + 31038 31156 119 2 2 77 67 101 0.749 6.62 1.02 Intr + 32945 33027 83 2 2 29 21 102 0.721 -4.04 1.03 Term + 34268 34413 146 0 2 80 48 126 0.757 4.89 1.04 PlyA + 34956 34961 6 1.05 2.00 Prom + 38619 38658 40 -3.65 2.01 Init + 38733 38759 27 2 0 91 119 15 0.915 4.64 2.02 Term + 55329 55556 228 2 0 74 48 158 0.305 6.05 2.03 PlyA + 56377 56382 6 1.05 3.03 PlyA - 56426 56421 6 1.05 3.02 Term - 66181 65931 251 2 2 102 47 141 0.132 6.28 3.01 Init - 75129 75012 118 0 1 34 81 73 0.456 1.61 3.00 Prom - 90430 90391 40 -5.45 4.08 PlyA - 90581 90576 6 1.05 4.07 Term - 100249 99998 252 1 0 101 41 267 0.998 17.95 4.06 Intr - 101772 101638 135 0 0 111 91 134 0.881 15.84 4.05 Intr - 102591 102503 89 1 2 89 13 46 0.556 -4.03 4.04 Intr - 104995 104882 114 2 0 108 -8 142 0.604 6.10 4.03 Intr - 116792 116705 88 2 1 90 94 51 0.901 4.52 4.02 Intr - 117466 117279 188 2 2 74 105 170 0.594 15.79 4.01 Init - 142678 142525 154 1 1 71 47 106 0.177 4.99 4.00 Prom - 144185 144146 40 -2.65 5.00 Prom + 149281 149320 40 -7.45 5.01 Init + 152963 153089 127 1 1 76 -11 109 0.761 0.17 5.02 Term + 153279 153775 497 1 2 33 54 343 0.972 19.14 5.03 PlyA + 155167 155172 6 1.05 6.08 PlyA - 155301 155296 6 1.05 6.07 Term - 162600 162459 142 2 1 64 32 90 0.146 -2.58 6.06 Intr - 171594 171336 259 1 1 58 78 177 0.851 9.30 6.05 Intr - 171960 171773 188 2 2 23 31 138 0.393 0.01 6.04 Intr - 172431 172286 146 0 2 98 19 126 0.471 4.86 6.03 Intr - 185820 185677 144 0 0 35 100 134 0.877 8.86 6.02 Intr - 186691 186597 95 2 2 54 63 68 0.365 -0.34 6.01 Init - 209558 209351 208 2 1 65 38 241 0.649 15.83 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init + 17423 17482 60 1 0 75 81 43 0.842 3.60 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_1|115_aa MRCLQTHTGSPSPSAMSGSSPKPSPEADADAILLVQAAELKRREGPEERKKPMIAAVAED ILIRQENGRFLRVSSTKPMNTKMWVPSRKRGKKVLVMAEEGLPQGSCAVGDASSD >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_1|348_bp atgagatgtctgcaaacacacactggctctccttccccttctgccatgagtggaagcagc ccaaagccctcaccagaagcagatgctgatgcaatacttcttgtacaggctgcagaactg aagcgaagagagggacctgaagaaaggaagaaaccaatgatagcagcagttgcagaagac attttgatcagacaagaaaatggaaggtttctgagagtttcttccactaagccaatgaac acaaagatgtgggttcccagccgaaagagaggcaagaaggtgctagtgatggcagaggag ggacttccccagggcagctgtgcagtaggagatgccagttcagactga >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_2|84_aa MDKSHDNGLPRRRYGEDDGGCSACLSESLPSPSFVVCQLKLLPGHIGRKAVTMKGFSCLS VPRRSASSPGLGTGMNAVLPFRGK >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_2|255_bp atggataagtcacatgacaatgggctgccaaggcgccgttatggagaggacgatggtggt tgttcggcttgtttgtcggaatccctcccctccccatcctttgttgtctgtcaactcaaa ctcctaccaggacacattgggagaaaagctgtcaccatgaaaggcttcagctgcctctca gtgccgcgtcgttctgccagctcccccggcctgggcactggcatgaacgctgtgctgcca tttagaggaaaatga >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_3|122_aa MSNVEAEGQKTGISIIVCQKNKWNRKNIRDITEENFLQQGWYWVSATFPGAQCKLLVDLP FWGLEDGGCLLTAPQGSAPVWTLHGGSHPTFAFCTILAEVPHECPAPAANFSLVIQAFPY IL >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_3|369_bp atgagtaatgtggaagcagaaggacagaaaacaggcatatccataattgtgtgtcaaaag aacaaatggaataggaaaaacatcagagatatcacagaagaaaactttcttcagcaaggc tggtattgggtgtctgcaacttttccaggtgcacagtgcaagctattggtggatctacca ttctggggtctggaggatggtggttgtcttctcacagctccacaaggcagtgccccagtg tggactctgcatgggggctcccaccccacatttgccttctgcactatcctagcagaggtt ccccatgagtgccctgctcctgcagcaaacttcagcctggtcatccaggcatttccatac atcctctga >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_4|339_aa MILNCMSPLICGFFSAFAISQTRPKPPLPPPPQPTLYEDNKDEDLYDDPPPQKIPVPREN KATSMKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK AKLKLEEMKPQKAACLFLKRTVGIPSQALLKWKGEIQEFCPNTKMLLVGCKSDLRTDVST LVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNV KRNKSQRATKRISHMPSRPELSAVATDLRKDKAKSCTVM >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_4|1020_bp atgattttgaattgcatgagtccacttatatgtggatttttttctgcctttgccatttct cagacaagaccaaaacctcctcttcctcctcctcctcagcctactctatatgaagataat aaggatgaagatctttatgatgatccacctccacagaaaattcctgttccaagagaaaat aaggcaacatcaatgaaggagagaagagccagccagaaattatccagcaaatctatcatg gatcctaatcagaacgtgaaatgcaagatagttgtggtgggagacagtcagtgtggaaaa actgcgctgctccatgtcttcgccaaggactgcttccccgagaattacgttcctacagtg tttgagaattacacggccagttttgaaatcgacacacaaagaatagagttgagcctgtgg gacacttcgggttctccttactatgacaatgtccgccccctctcttaccctgattcggat gctgtgctgatttgctttgacatcagtagaccagagaccctggacagtgtcctcaaaaag gcaaagctcaagcttgaggaaatgaagccacaaaaagctgcttgcttgttcttaaagagg acagttggaattccaagccaggcattgctgaagtggaaaggtgaaatccaggaattttgt ccaaataccaaaatgctcttggtcggctgcaagtctgatctgcggacagatgttagtaca ttagtagagctctccaatcacaggcagacgccagtgtcctatgaccagggggcaaatatg gccaaacagattggagcagctacttatatcgaatgctcagctttacagtcggaaaatagc gtcagagacatttttcacgttgccaccttggcatgtgtaaataagacaaataaaaacgtt aagcggaacaaatcacagagagccacaaagcggatttcacacatgcctagcagaccagaa ctctcggcagttgctacggacttacgaaaggacaaagcgaagagctgcactgtgatgtga >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_5|207_aa MKQLWNQVTGRGWNRLEDSEEDRKCGKVWNFQETWKAHKTGRYLWNFELERDDLGYLVEE ISRQQSVQEEAEHKSLENLQPDAAIEKKKLFSGEKFKPAAEICISNEEPNVNHQDNGENV SRVCQKTSQQSFPSQARKARREKWFPGPDPGTHYCVQPQHCIPATAAMAKRGQGTAQDIA SESGSPQHWQLPCGVGPVGVQKTRFEV >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_5|624_bp atgaagcaactgtggaaccaggtaacaggcagaggttggaacaggttagaggactcagaa gaagacaggaaatgtgggaaagtttggaacttccaagagacttggaaagctcataagaca ggaagatatctgtggaactttgaacttgagagagatgatttggggtacctggtggaagaa atttctaggcagcaaagtgttcaagaggaagcagagcataaaagtttagaaaatttgcag cctgatgctgcaatagaaaagaaaaagctattttctggggagaaattcaaacctgctgca gaaatttgcataagtaacgaggagccgaatgttaatcaccaagacaatggggaaaatgtc tccagggtatgtcagaaaacttcacagcagtccttcccatcacaggcccgaaaggctagg agggaaaaatggtttcctgggccagatccagggacccactactgtgtgcagcctcagcac tgcatcccagccactgcagccatggctaaaaggggccaaggtacagctcaggacattgca tcagagagtggaagcccccagcattggcagcttccatgtggtgttggtcctgtgggtgtg cagaagacaagatttgaggtttga >gi568815596r:150369990_150587417|GENSCAN_predicted_peptide_6|393_aa MKQVCNWVMGRSWKIVKSSEEDKEMRESLELLRDLLNGCDQGAESDMDNEVQDEEVLDGN EKLIGSWSKANSKSSSAQKTTLKSLTFEKYGIKHHGTGFKKWKICWLAVEIIGKPPQNVG EEDGGGVAAQESFKEDMWGEEDSTQKQGETCCGLLHAQDSPTSTAPCSRAPSPINRPRSE ECGRMARDWQAAPLAAPVSEFVNIPMDTLYLANLVGTWRTFVSSSGIMNAPINTLSKRTN QLSVKQTSQPSVKWTNLHDVAKVCSFTPEASETTNPPGETNNSRRITLRTVTLTAKVCNF TPEPPRLRTHRKEETPNTSEHQKEQTPDTPPLRTVTLTARVRGLFLSHPSIPEAAQCPPP ALKEMEERRMMHFGSMEAYKSTVELFCFEELCM >gi568815596r:150369990_150587417|GENSCAN_predicted_CDS_6|1182_bp atgaagcaagtttgcaactgggtaatgggtagaagttggaaaattgtgaagagttcagaa gaagacaaggagatgagggaaagtttggaacttcttagagacttgttgaatggttgtgac caaggtgctgaaagtgatatggacaatgaagttcaggatgaggaagtcttagatggaaat gagaaacttattgggagctggagtaaagctaattctaagtcctcaagtgctcagaaaaca acattaaaaagtctgacatttgaaaagtatggaattaaacatcatggaactggctttaag aagtggaaaatctgctggctggcagtggaaataatagggaaaccacctcagaatgttgga gaagaggatgggggaggagttgcagctcaggaatccttcaaagaagacatgtggggagag gaagacagcacacagaagcagggagaaacctgctgtgggctcctgcacgcccaagactcc cctacgagtactgctccctgctccagggcgcccagtcccatcaaccgcccaaggtctgag gagtgtgggcgcatggcacgggactggcaggcagctccacttgcagcccctgtctcagag tttgtaaatataccaatggacactctgtatctagctaatctagtggggacctggagaact ttcgtgtctagctcagggattatgaacgcaccaatcaacaccctgtcaaaacggaccaat cagctctctgtaaaacagactagtcagccctctgtaaaatggaccaatctgcacgatgtg gcgaaggtctgcagcttcactcctgaagccagcgagaccacgaacccaccgggagaaacg aacaactccagacgcatcactttaagaactgtgacgctcaccgcgaaggtttgcaacttc actcctgagccaccgagactacgaacccaccggaaggaagaaactccgaacacatccgaa catcagaaggaacaaactccagacacgccgcctttaagaactgtaacactcaccgcgagg gtccgcggtttattcttgagtcatccatccatccctgaggctgctcagtgtcctcctcct gccttgaaggagatggaggaaagaaggatgatgcactttggttccatggaggcttacaag agcaccgtggaactattctgctttgaggaactctgcatgtaa