GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:50:20

Sequence gi568815596r:11346480_11565879 : 219400 bp : 44.99% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5148   5641  494  2  2   92  119   635 0.988  61.63
 1.02 Intr +   7124   7130    7  2  1  112   81     0 0.038  -4.56
 1.03 Intr +  18667  18810  144  0  0   64   89   126 0.410  10.78
 1.04 Intr +  25346  25397   52  1  1   50  103    56 0.076   1.78
 1.05 Term +  25443  25594  152  1  2  112   42    77 0.104   3.57
 1.06 PlyA +  25932  25937    6                               1.05

 2.03 PlyA -  27833  27828    6                              -0.45
 2.02 Term -  28266  28127  140  1  2   76   55   104 0.547   4.03
 2.01 Init -  42225  42171   55  0  1   55   93    54 0.603   4.11
 2.00 Prom -  43291  43252   40                              -4.06

 3.04 PlyA -  44542  44537    6                               1.05
 3.03 Term -  47661  47539  123  0  0   99   42    79 0.749   2.78
 3.02 Intr -  49355  49203  153  2  0   89   58    90 0.746   6.37
 3.01 Init -  56234  56151   84  2  0   73  -17   215 0.135   8.33
 3.00 Prom -  63468  63429   40                              -1.96

 4.03 PlyA -  67310  67305    6                               1.05
 4.02 Term -  76377  76232  146  1  2  121   43    72 0.729   4.07
 4.01 Init -  78444  78375   70  0  1   93  115    40 0.491   8.41
 4.00 Prom -  79133  79094   40                              -5.56

 5.08 PlyA -  80652  80647    6                               1.05
 5.07 Term -  86212  86196   17  2  2  114   55     2 0.344  -2.10
 5.06 Intr -  92322  92155  168  1  0   74   68   101 0.345   6.62
 5.05 Intr - 101295 101148  148  0  1  105   94    81 0.677  10.21
 5.04 Intr - 105327 105108  220  2  1   64  -11   121 0.309  -1.90
 5.03 Intr - 107319 107103  217  1  1   66   76   138 0.683   7.96
 5.02 Intr - 110754 110700   55  0  1  101  100     5 0.784   1.55
 5.01 Init - 119400 119293  108  0  0   85  107   141 0.454  15.96
 5.00 Prom - 122674 122635   40                              -3.86

 6.02 PlyA - 123474 123469    6                               1.05
 6.01 Sngl - 136903 136280  624  1  0   74   47   291 0.782  17.81
 6.00 Prom - 144684 144645   40                              -2.06

 7.04 PlyA - 144853 144848    6                               1.05
 7.03 Term - 146504 146487   18  2  0   87   52     4 0.191  -4.98
 7.02 Intr - 146967 146778  190  2  1   68   53    86 0.437   2.69
 7.01 Init - 148524 148472   53  0  2   95  101    17 0.811   4.33
 7.00 Prom - 150638 150599   40                               0.34

 8.04 PlyA - 150838 150833    6                               1.05
 8.03 Term - 159873 159734  140  1  2   55   50    83 0.444  -0.67
 8.02 Intr - 162085 161861  225  2  0   22   77   154 0.058   5.66
 8.01 Init - 176065 175957  109  1  1   86   71    55 0.144   4.06
 8.00 Prom - 185533 185494   40                              -3.96

 9.04 PlyA - 185653 185648    6                               1.05
 9.03 Term - 195989 195823  167  0  2  104   42   160 0.327  11.08
 9.02 Intr - 198093 198066   28  0  1  118   67    14 0.344  -0.01
 9.01 Init - 198537 198535    3  0  0  113   22     0 0.289  -4.10
 9.00 Prom - 199974 199935   40                              -2.46

10.00 Prom + 202925 202964   40                              -0.46
10.01 Init + 210136 210292  157  0  1   57   81   225 0.752  18.77
10.02 Intr + 215984 216103  120  0  0  107  101    84 0.928  12.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_1|282_aa
MVNPTVFFDISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKGLDYKGSCFHRIIPGF
MCQGGDFTYNNGTGGKSLYGEKFDDENFILKRIRPGILSMAKAGPNTNGSQFFICTAKTE
WLIGKHVVFGKVKEGMNIVEAMEPFGSRNGKTSKKITIADCGQLWILADPSIDDLLLLAV
SRVASLKPPEQRPGIFSEQQPTRQLEETPGLFCSQLQVPGQEAEPGATEPATGHFSPPPS
LLTLSAITPKEGRFLECPACHPRDSPQGTHCWIQQVCPSASP

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_1|849_bp
atggtcaaccccactgtgttcttcgacatcagtgtcagtggcaagcccttgggccatgtc
tccttcaggatatttgcagacaagctttcaaagacagcacaaaactttcgtgctctgagc
actggagagaaaggacttgattataagggttcctgctttcacagaattattccagggttt
atgtgtcagggtggtgacttcacgtacaataatggcactggtggcaagtccctctatggg
gagaaatttgatgatgagaacttcatcctgaagcgtatacgtcctggcatcttgtccatg
gcaaaagctggacccaacacgaatggctcccagtttttcatctgcactgccaagactgag
tggttgattggcaagcatgtggtctttggcaaggtgaaagagggcatgaatattgtggag
gccatggagccctttgggtccaggaatggcaagaccagcaagaagatcaccattgctgat
tgtggacaactctggattctggctgacccctccatcgatgacctgcttctgctggctgtg
tccagggtggcctccctgaagccaccggagcagaggcctggtatcttctcagagcagcag
ccaaccaggcagctggaggaaacccctggtctcttttgcagccaactccaagttccagga
caagaggcagaaccaggtgccaccgagcctgccacagggcacttctcaccccctccatcc
ctgctgacgctgagtgctatcacccccaaggaaggacgcttcctggaatgcccagcctgc
cacccaagagactcccctcagggcacccactgctggatccaacaggtctgccccagtgcc
agcccctag

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_2|64_aa
MTDSLTTESPEARMALTAGRKNSRTGEEGHSRNATETSRERCTVSASHERNELQEETQGS
TAAG

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_2|195_bp
atgacagactcgctgaccacagaaagcccagaagctagaatggccctcacagctgggaga
aagaacagcagaactggggaagaaggacattccagaaatgccacagagacctcaagagag
cgctgcactgtgtctgcctcacacgagagaaacgagctgcaggaagagacccagggctcc
acggccgctggatga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_3|119_aa
MVVVMVVVVAVMAAAVVMAMAAAAVVVVEPSCIPNSIPGSAYQKTWIDTPGPETLANISH
ATRARQDRCPRPPKGRLTLILESSGFLALSLFVDPPAASTTQIPAGKARGRLNRKKKPL

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_3|360_bp
atggtggtggtgatggtggtggtggtggcggtgatggcagcggcagtggtgatggcgatg
gcggcagcggcggtggtggtggtggaaccctcttgcatccccaattccattcctggatct
gcttatcagaagacctggattgatactccaggcccagagacccttgccaacatcagtcat
gctaccagggcccgtcaggaccgctgcccacgtcctcccaaaggccggctcacactgatt
ctggaatcttcaggcttcttggcgctcagcctgttcgttgatccccctgctgcttctacc
acccagatcccagcagggaaagccagagggagactaaataggaagaagaagcctctctga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_4|71_aa
MATVHSYAGSPTYPAIGHIHGKRGNHSTNGDNIAREDVLPGQEKHAPSYVPCPPFLFIFV
YLFVTECGNRK

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_4|216_bp
atggccactgttcactcatatgcgggctcccccacatacccggcaattggacacattcat
ggtaagcgcggcaaccattctaccaacggagataatattgccagagaagacgttttacca
gggcaggagaaacatgcaccatcttacgtcccttgccctccatttctcttcatatttgtg
tacctgtttgtaactgaatgtggtaatagaaaatag

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_5|310_aa
MSQQRPARKLPSLLLDPTEETVRRRCRDPINVEGLLPSKIRINLEDNVQYVSMRKALKVK
RPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKS
KNHIRWIGSDLSNFGAVPQQKKLQEELSDLSAMEDALDELIKDCAQQLFELTDDKENERY
PLSLYLFKISASKTDYLSSRDSITVHIRSTNGPIDVYLCEVEQGQTSNKRSEGVGTSSSE
STHPEGPEEEDTGQCLETVLIIMTGVLLASRSGGRDAAKPSVQDKPSDGHLVQRANGAEA
KRPKLGLKVA

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_5|933_bp
atgagtcagcagcggccggcgaggaagttacccagtctcctcctggacccgacggaggag
acggttcgccgtcggtgccgagaccccatcaacgtggagggcctgctgccatcaaaaata
aggattaatttagaagataatgtacaatatgtgtccatgagaaaagctctaaaagtgaag
agacctcgttttgatgtatcgctggtttatttaactcgaaaatttatggatcttgtcaga
tctgctcccgggggtattcttgacttaaacaaggttgcaacgaaactgggagtccgaaag
cggagagtgtatgacatcaccaatgtcttagatggaatcgacctcgttgaaaagaaatcc
aagaaccatattagatggataggatctgatcttagcaattttggagcagttccccaacaa
aagaagctacaggaggaactttctgacttatcagcaatggaagatgctttggatgagtta
attaaggattgtgctcagcagctgtttgagttaacagatgacaaagaaaatgaaagatat
cctttaagtctatacctttttaaaatttctgcttccaaaacagattacttaagtagtaga
gactctatcacagtgcacataaggagcaccaacggacctatcgatgtctatttgtgtgaa
gtggagcagggtcagaccagtaacaaaaggtctgaaggtgtcgggacctcttcatctgag
agcactcatccagaaggccctgaggaagaggacactgggcaatgtctggagacagttttg
attatcatgactggagtgctgttggcatctaggagtggaggacgggatgctgctaaacct
agtgtacaggataaacccagcgacggtcacctggtccagcgtgccaatggtgctgaggcc
aagagacctaagttaggactgaaggtagcttga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_6|207_aa
MCQAPGASGALSLSHTHTRAHTDTRVHMHARTRALTHAHTCTHAHPYTHTHAHPTHTRAH
TYTRAHTHAQAHGSGSTQVPTRCQGRSRTPSTSFPGPGPGSARVRRGAPSPPGAECPPRA
APHSPAPPLRPLPPGGTAPTSGPLSSGRRGPAPERPPPTEASPAYRLSSRPQRQAPHPDL
APAPATARGARQSPDLRNRGQRGGLDP

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_6|624_bp
atgtgccaagcgccaggagcctcgggtgctctctctctctcacacacacacacgcgcgcg
cacaccgatacacgcgtacacatgcacgcacgcacacgcgcactcacacacgcacacacg
tgcacacacgcacacccatacacgcacacgcacgcacaccccacacacacgcgcgcccac
acctatacccgcgcgcacacgcacgcacaagcgcacggcagcggcagcacccaggtccct
acacgctgccagggccgatcccggacaccttccacctccttcccgggaccagggccagga
agtgcccgcgtccggcggggcgcaccttccccgccgggcgccgagtgcccgccccgagca
gccccgcacagccccgcgcccccgctccgcccgctgccgcccggagggaccgctcctacc
tcgggccctttgtcctccggccgccgcggccccgctcctgagcgcccgccgccgacggag
gctagcccagcctacaggctgagctcgcggccgcagcgccaggccccgcacccggacctg
gccccggccccggccacggcgcggggcgctcggcaaagcccggatctccggaaccgcggc
cagcgcggaggactcgacccctga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_7|86_aa
MGTEQEMWRAMKTEHHQRSVAASDSHRSSNPIVNCAYKGSRLHAPYENLIPDDLRWNSFT
LPHTLSVEKLSSMKLDPGAKKDISSC

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_7|261_bp
atgggaacagagcaggagatgtggagagccatgaaaactgaacaccaccaacgatcagtg
gcagcatcagattctcataggagctcaaaccctattgtgaactgcgcctacaagggatcc
aggttgcacgctccttatgagaatctaatacctgatgatctgaggtggaatagtttcacc
ctcccccacaccctgtctgtggaaaaattgtcttccatgaaactggaccctggtgccaaa
aaggatatctccagctgctga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_8|157_aa
MICRFLLRVLQQCAGSSTKTSIQATVVTDPAKFNFLTSHVKGEWPGKDVRKDAKQTFATL
GESQKGAQPEAAKACAKPVLLKTHAGRCSLLENEGSGKYSNASLMCPDAEDGYGHKPSPQ
INHLTLAQLHGNYLLAHYQTTLLKDRKFQHLYSTKNT

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_8|474_bp
atgatttgtaggttcctgctgcgagtcctgcagcagtgtgcagggtccagcacaaaaacc
agtattcaggcgacagttgtgacagacccagccaagttcaacttcctaacaagccacgta
aaaggggagtggccaggcaaagatgtcaggaaggatgcaaaacaaacctttgccacactg
ggggaaagccagaaaggagcccagcctgaggctgccaaagcgtgtgcaaagcccgttctg
ctgaagacccacgcagggcgctgttctttgttggaaaatgaaggatctgggaaatattcc
aacgccagcctcatgtgtcccgatgcagaggatggctatggccacaagcccagtccccag
ataaaccatttgaccctggctcagctgcatggtaactacctgttggcacattaccaaacc
acgcttctcaaggacaggaaattccagcatctatactcaaccaagaacacatga

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_9|65_aa
MNRTAKSLPTEPRTVSYGRVDLQGNGIDSADDPTLQILLDHHPGHPKLQEQMQPGAFGVS
GLKYR

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_9|198_bp
atgaatagaacagccaaaagtttgcccacagagcccagaacagtttcttacgggagagtg
gatctgcaagggaatggcattgactctgccgatgatcccacgctgcagatcctactcgac
caccacccaggccaccccaagctccaagagcagatgcagccgggggccttcggggtctca
gggctcaagtacagatag

>gi568815596r:11346480_11565879|GENSCAN_predicted_peptide_10|93_aa
MGNSYAGQLKTTRFEEVLHNSIEASLRSNNLVPRPIFSQLYLEAEQQLAALEGGSRVDNE
EEEEEGEGGLETNGPPNPFQLHPLPEGCCTTDX

>gi568815596r:11346480_11565879|GENSCAN_predicted_CDS_10|279_bp
atgggaaattcttacgctggacagctgaagacgacacgctttgaagaggtcttgcacaat
tccatcgaggcatccctgcggtccaacaacctggtgcccaggcccatcttttcccagctg
tacctggaagctgagcagcagcttgccgctctagaaggtggtagccgagtggacaatgag
gaagaggaagaagagggagaaggagggctggaaacaaatggccccccaaaccctttccag
ctgcaccctctgcctgaaggatgctgtaccacagacgnn