GENSCAN 1.0 Date run: 4-Nov-116 Time: 10:40:48 Sequence gi568815596f:38381851_38582801 : 200951 bp : 43.92% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.00 Prom + 7029 7068 40 -2.26 1.01 Sngl + 15679 15912 234 0 0 97 37 190 0.418 8.10 1.02 PlyA + 16120 16125 6 1.05 2.00 Prom + 19256 19295 40 -1.96 2.01 Init + 21473 21551 79 1 1 47 78 30 0.246 -2.86 2.02 Intr + 27243 27333 91 1 1 123 96 48 0.645 8.15 2.03 Intr + 34917 35043 127 0 1 63 70 34 0.136 -0.22 2.04 Intr + 58033 58197 165 0 0 43 76 116 0.055 6.06 2.05 Intr + 59139 59253 115 2 1 50 53 60 0.051 -1.28 2.06 Term + 67152 67192 41 1 2 124 54 8 0.044 -1.65 2.07 PlyA + 68433 68438 6 1.05 3.00 Prom + 69047 69086 40 -3.96 3.01 Init + 77268 77316 49 2 1 92 64 77 0.588 4.81 3.02 Intr + 81628 81721 94 2 1 26 65 75 0.458 -1.98 3.03 Intr + 82976 83096 121 2 1 60 77 96 0.648 6.20 3.04 Term + 93245 93436 192 1 0 111 37 43 0.286 -1.08 3.05 PlyA + 94577 94582 6 -0.45 4.00 Prom + 96301 96340 40 -4.46 4.01 Sngl + 100001 100954 954 1 0 89 37 1319 0.999 123.52 4.02 PlyA + 101002 101007 6 1.05 5.07 PlyA - 105902 105897 6 1.05 5.06 Term - 107683 107518 166 0 1 74 45 99 0.132 1.59 5.05 Intr - 114628 114499 130 2 1 104 37 66 0.198 2.85 5.04 Intr - 153694 153604 91 1 1 2 82 115 0.279 1.87 5.03 Intr - 153909 153756 154 2 1 89 56 103 0.538 7.27 5.02 Intr - 154336 154104 233 1 2 32 2 149 0.541 -2.73 5.01 Init - 157184 157104 81 2 0 74 80 116 0.820 10.37 5.00 Prom - 158907 158868 40 -5.06 6.05 PlyA - 161020 161015 6 1.05 6.04 Term - 172302 172250 53 1 2 102 51 20 0.008 -2.71 6.03 Intr - 186447 186349 99 1 0 97 91 34 0.801 4.68 6.02 Intr - 186593 186536 58 2 1 78 111 67 0.947 6.46 6.01 Intr - 195682 195611 72 1 0 65 115 40 0.176 4.00 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_1|77_aa MPEPPPAAMGSCAARASPTSTAPSSMAPGPIHRPRAEECGRKVQDWQAAPPATLVWDPLG EASWTPESSGDLENLYV >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_1|234_bp atgcctgagcctccccctgccgccatgggctcctgcgccgcccgagcctccccgacgagc accgccccctcctccatggcaccaggtcccatccaccgcccaagggctgaggagtgcgga cgcaaggtgcaggactggcaggcagccccacctgcaaccctggtgtgggatccacttggt gaagccagctggactccagagtctagtggggacttagagaacctttatgtctag >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_2|205_aa MWGAPLPRHPVWDVRSASTRPRPRLGDEGEEKDKTKHSPEILAYKSEKNYFLATCARHQT WARHLLAMGEQLERSQMCLHSIARKPDVKKHCKCDDFCKYSLEPDCGPELSSEAMLWDKA TSKTIMSSSWCCQKKELLDKVNESVLTKISVFSQSIRTAPRKEWLILPGNIEKDIFEDVG FKLSLEKLLWLRKMGQEYTTTLKPV >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_2|618_bp atgtggggagcgcctctgccccgccaccccgtctgggatgtgaggagcgcctctacccgg ccgcgaccccgtctgggagatgaaggggaagaaaaagataaaaccaaacacagcccagaa attctggcatacaaatcagaaaagaactacttcttagccacctgtgccagacaccaaaca tgggccagacacttgctagccatgggagagcagctagaaagaagtcaaatgtgcctgcac agcatagcaagaaaaccagatgtgaaaaagcattgcaagtgtgatgatttctgcaagtat tcactagagcccgactgtggcccagagctgtcctcagaggctatgctgtgggacaaggcc acaagcaaaactataatgagctcttcctggtgttgccagaaaaaagaactcttggataag gtcaacgaatctgtccttacaaagatctctgtgttttcacagagcatcaggacagcccca agaaaggagtggctaattcttcctgggaacattgaaaaggatatcttcgaggacgtgggt tttaaactaagtcttgagaagctcctttggctgagaaaaatgggtcaggaatatacaact acgctaaaaccagtctga >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_3|151_aa MVFRYVGRACLELLTSGQSCDLVEGVEDSQLEELPTTSLSKVLQTMKVIPEVTLEPKQIA VASVSLTPCGNGSFSPSLLPPATGLEDKDKHFILSESCLKIESWRSGLDAVPTGRAKGIQ RHHEDTGVQEKRPPEEGRECRGAKYHWGPEL >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_3|456_bp atggtgtttcgctatgttggccgggcttgtcttgaactcctgacctcaggccaaagctgt gatttggtagaaggagtggaggactcgcagctggaagagctgccaaccacttcactttcc aaagtattgcaaaccatgaaagttatccctgaagttactttggaacctaagcagatagct gtggcctctgtctccctgacgccctgcggaaatggctcctttagtccttccctgctgcca cctgccactggactggaagacaaggataaacatttcattctctcagaatcctgtttgaaa atagaatcctggaggtcaggcctggatgctgtgccaacggggagagctaaaggtatccag cggcaccatgaggacactggtgtccaagagaagaggccaccagaggagggcagggaatgc agaggggcaaagtaccactgggggcctgaactatag >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_4|317_aa MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM MRKAIRGHLENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI SPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHS IINGYKRVLALSVETDYTFPLAENVKAFLADPSAFVAAAPVAADTTAAPAAAAAPAKVEA KEESEESDEDMGFGLFD >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_4|954_bp atgcccagggaagacagggcgacctggaagtccaactacttccttaagatcatccaacta ttggatgattatccaaaatgtttcatcgtgggagcagacaatgtgggctccaagcagatg cagcagatccgcatgtcccttcgcgggaaggtcgtggtgctgatgggcaagaacaccatg atgcgcaaggccatccgagggcacctggaaaacaacccagctctggagaaactgctgcct catatctgggggaatgtgggctttgtgttcaccaaggaggacctcactgagatcagggac atgttgctggccaataaggtgccagctgctgcccgtgctggtgccattgccccatgtgaa gtcactgtgccagcccagaacactggtctcgggcccgagaagacctcctttttccaggct ttaggtatcaccactaaaatctccaggggcaccattgaaatcctgagtgatgtgcagctg atcaagactggagacaaagtgggagccagcgaagccacgctgctgaacatgctcaacatc tcccccttctcctttgggctggtcatccagcaggtattcgacaatggcagcatctacaac cctgaagtgcttgataaaacagaggaaactctgcattctcgcttcctggagggtgtccgc aatgttgccagtgtctgtctgcagactggctacccaactgttgcatcagtaccccattct atcatcaacgggtacaaacgagtcctggccttgtctgtggagacggattacaccttccca cttgctgaaaatgtcaaggccttcttggctgatccatctgcctttgtggctgctgcccct gtggctgctgacaccacagctgctcctgctgctgctgcagccccagctaaggttgaagcc aaggaagagtcggaggagtcggacgaggatatgggatttggtctctttgactaa >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_5|284_aa MGYIKCGNLNTSNIKKGEGNSKNMEGQNCDRSAHSRGVVEDKAKAQGGGEEVGGHNPKGD GPWTLAWRIFSAKEGDPGGSLAVRAAQACHPDRASSEPAAPPLINPLTLVKNACADPQSL VLPSCSLVLGKGGTTVETEEYFGGLAGGRVFTVVQKEIWKACGTSYLYQVGRRDCICYRT KKANLPGQETEALGKVEVARGLTVNCARIGGQEPSLLEEDPPRIPSRMPSLGKTGGVSPG PSPRSPEGGLGECGAVGDLKANRDEVPSGALNVGLMRSVLQKDE >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_5|855_bp atggggtacatcaaatgtggaaaccttaacaccagcaacatcaagaagggggaaggcaac agtaaaaacatggaaggccagaactgcgaccgctccgcgcactcccggggcgtggttgag gacaaagccaaagcccagggtggcggggaggaggtgggcggccacaaccccaagggagat gggccttggaccttagcctggaggatcttctccgctaaggagggagacccaggaggctcg ctcgcggtccgcgcagcccaggcctgccaccctgaccgcgcctcctcggagcccgcagct ccacctttgatcaaccctcttacgcttgtgaagaacgcatgtgctgacccccagagcctg gtcctgccgagctgctccctggtgctggggaaaggtggcacaactgtagagacagaagag tattttgggggcctggcagggggcagagtgttcacggtggtccagaaggagatctggaag gcctgcggaacgtcctacctgtaccaggtgggccggcgggactgcatttgctaccggacc aagaaggcaaatctccctgggcaggaaactgaagctcttgggaaggtggaagttgcacgt ggtctcacagtcaactgtgccagaataggaggccaggaaccatctctgctggaggaagac ccaccacgcatcccttcaagaatgccaagcttgggaaagacaggtggagtctcccctggc cccagccccaggtccccagaaggtggtctgggggagtgtggagcagttggagatttgaag gcaaatcgtgatgaggtccccagtggagcactgaatgtggggttgatgagaagcgtcctt cagaaggatgaatag >gi568815596f:38381851_38582801|GENSCAN_predicted_peptide_6|93_aa IEERVARDKPFWENTLLRLDMMAMLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTD AVEALTALNHYQIRVPNLLDGHSGSHLAYTLEG >gi568815596f:38381851_38582801|GENSCAN_predicted_CDS_6|282_bp atagaggaaagggtcgccagagacaagccattttgggagaacacccttcttcgtttagac atgatggctatgttgtgtaatgaccatgaagttcttacattcatcaaatataaagtgttt gatgcaaaaccttcagccaaaacactttctgggctattagaatgggagtgcaaaactgat gcagtagaagcccttacggcactgaatcactatcagataagagtgccgaatttgctggac ggccacagtggctcacaccttgcctatactttggaaggctga