GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:13:40

Sequence gi568815596f:129880116_130080877 : 200762 bp : 44.39% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 Intr -   2076   1994   83  0  2   46  106    84 0.004   4.44
 1.11 Intr -   3121   3096   26  2  2   71   94    27 0.002  -0.66
 1.10 Intr -   7975   7868  108  2  0   92   53    69 0.048   4.06
 1.09 Intr -  10154   9884  271  2  1   57   45    71 0.044  -3.19
 1.08 Intr -  12595  12430  166  0  1   26   78   105 0.135   3.26
 1.07 Intr -  15765  15696   70  1  1  114   44    43 0.024   0.74
 1.06 Intr -  25152  25111   42  1  0  126   97    49 0.747   7.81
 1.05 Intr -  25971  25888   84  1  0  128   78   -17 0.648   1.09
 1.04 Intr -  28679  28542  138  0  0  106   37    52 0.614   2.34
 1.03 Intr -  43566  43443  124  0  1   94  105   117 0.700  14.16
 1.02 Intr -  47142  47051   92  1  2  124   61   -57 0.073  -5.09
 1.01 Init -  54127  54064   64  1  1  105  117   214 0.995  25.31
 1.00 Prom -  63201  63162   40                              -3.36

 2.00 Prom +  69615  69654   40                              -1.66
 2.01 Init + 100001 100685  685  1  1   86  -17   479 0.578  32.47
 2.02 Term + 101617 101747  131  2  2   25   51   121 0.772   0.44
 2.03 PlyA + 101859 101864    6                               1.05

 3.04 PlyA - 102583 102578    6                               1.05
 3.03 Term - 110074 110066    9  1  0  150   37     0 0.903  -0.71
 3.02 Intr - 110423 110246  178  1  1   57   74   204 0.978  15.82
 3.01 Init - 110634 110582   53  0  2   16  101    30 0.393  -2.27
 3.00 Prom - 111886 111847   40                              -8.86

 4.00 Prom + 112292 112331   40                              -2.46
 4.01 Init + 112774 112863   90  0  0   54   91   106 0.575   8.00
 4.02 Term + 113165 113812  648  1  0   44   36   284 0.518  12.88
 4.03 PlyA + 114097 114102    6                               1.05

 5.00 Prom + 116466 116505   40                              -5.16
 5.01 Init + 118371 118409   39  2  0  111   49    50 0.971   3.62
 5.02 Intr + 119482 119697  216  0  0   46  -13   199 0.015   4.30
 5.03 Term + 126007 126573  567  0  0   69   48   460 0.306  34.52
 5.04 PlyA + 126980 126985    6                               1.05

 6.04 PlyA - 127104 127099    6                               1.05
 6.03 Term - 130344 130164  181  2  1   44   49    84 0.003  -2.82
 6.02 Intr - 148368 148194  175  1  1  118   94   166 0.815  19.20
 6.01 Init - 151484 151436   49  2  1   86   58    23 0.196  -1.77
 6.00 Prom - 152637 152598   40                              -5.06

 7.00 Prom + 153233 153272   40                              -5.86
 7.01 Init + 156768 156914  147  2  0   90   85   135 0.585  11.64
 7.02 Term + 157917 158138  222  2  0   30   48   154 0.660   2.52
 7.03 PlyA + 158844 158849    6                               1.05

 8.05 PlyA - 160732 160727    6                               1.05
 8.04 Term - 165465 165442   24  0  0  121   48    26 0.325   0.12
 8.03 Intr - 169217 169017  201  2  0  -12   34   208 0.501   4.88
 8.02 Intr - 169756 169701   56  2  2   98  100    36 0.622   4.50
 8.01 Init - 172472 172244  229  2  1   85    8   158 0.568   4.65
 8.00 Prom - 174280 174241   40                              -9.16

 9.04 PlyA - 174334 174329    6                               1.05
 9.03 Term - 177457 177278  180  1  0   57   42   109 0.474   0.81
 9.02 Intr - 177879 177750  130  2  1   76   92    96 0.959   9.50
 9.01 Init - 180302 180226   77  2  2   81   65    55 0.367   3.06
 9.00 Prom - 192797 192758   40                              -3.46

10.03 PlyA - 193478 193473    6                               1.05
10.02 Term - 195457 194129 1329  1  0   51   43  2067 0.962 190.06
10.01 Intr - 197127 196966  162  0  0   78   53   102 0.955   5.87

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 119482 119763  282  0  0   46   43   265 0.956  13.23


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_1|423_aa
MRPLLCALAGLALLCAVGALADVFPPALDPGPPINSGSAFLGFSCLPPVPQAMVEKTVDH
LGTQVKGLLGLLEDLAWNLPGGPFSPVPDLLGKGLLESSRRRFQPLDTEGVGAAHLNTCS
CCCSWVVLLRPSGLLPGLPGNSHLLLETWERYHLLQEAIPDSSLSPGDGESADDLAQRRL
EDRPPCHGRSLDAVVGTAVHEVIVFHMNAWYLPSSCDKGAKEASGPVPPGHSISAPELES
TNHTTKETQVGAGGPRTVELKTELVSDGVGYLAKEISKHRAEGAAWFLLTAYSKMQKKRE
ELKKKLLNKKEPELEYLRSSQSLCISKSEKSCSEGNTTGVAVQPFDKEITDLLVPRGHSE
GLQMPMSVLLAMHGPRHLPASTADDDRCYEVHLLQEEQQRAGAEMSEKHQGGSVQYGTKH
CHG

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_1|1269_bp
atgcggcccctgctttgcgcgctggccgggctggccctgctctgtgccgtgggcgctttg
gccgatgtgttcccacccgctctggatccagggcctcccatcaattcaggaagtgcattc
cttgggttctcttgtcttcctcctgtccctcaggctatggtagagaagaccgtggatcac
ctggggacacaggtgaaaggcctgctgggcctgctagaggacctggcctggaacctgccc
gggggacccttcagccccgtccccgacctcctcggaaaagggttgctggagagctcaagg
aggcggttccagccacttgacaccgagggagtaggagccgctcacctgaacacctgcagc
tgctgctgcagctgggtggtcctgctgcgcccctctggcctcctccctggcctcccaggt
aactcccacttgctacttgagacttgggaaaggtaccacctcctccaggaagccatccct
gattccagcctgagcccaggagatggtgagagcgctgatgacctagcccaaaggcggctg
gaagacaggcccccatgccatggccgatcactggatgctgtggtgggcacagcagtgcat
gaggtcattgtctttcacatgaatgcctggtacctgccaagctcctgtgacaaaggggcc
aaggaggcctcaggccccgtccctcctgggcacagcatttctgcccccgagctagagtct
accaaccataccaccaaggagacccaggtcggggcaggtggccctcgcactgtggagctg
aagacggagcttgtgagtgatggagttggatatctagccaaggagatttctaagcataga
gctgaaggagcagcttggttcctcctgactgcttatagtaaaatgcaaaagaagagagag
gaattgaagaagaaactcttaaacaaaaaagaaccagaacttgaatatctgagaagttct
cagtctctctgtatttcaaaaagtgagaaatcttgttctgaaggaaacactacaggtgtg
gctgtacagccatttgataaagaaatcacggatctcctggtgccaagggggcattcagag
ggcctgcagatgcccatgtctgtcctactggctatgcatggtcccagacacctgcctgct
tctactgctgatgacgacaggtgctatgaggtgcatcttctgcaggaggaacagcaacga
gctggagcagaaatgagtgagaagcatcaagggggatcagtgcagtatggcacaaagcac
tgccatggn

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_2|271_aa
MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCKEPVEEFKFGTT
IKTTELAEITISKAYQQKNPQQNSKNFAQDI

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_2|816_bp
atgtccgcgggcggagacttcgggaatccgctgaggaaattcaagctggtgttcctgggg
gagcaaagcgttgcaaagacatctttgatcaccagattcaggtatgacagttttgacaac
acctatcaggcaataattggcattgactttttatcaaaaactatgtacttggaggatgga
acaatcgggcttcggctgtgggatacggcgggtcaggaacgtctccgtagcctcattccc
aggtacatccgtgattctgctgcagctgtagtagtttacgatatcacaaatgttaactca
ttccagcaaactacaaagtggattgatgatgtcagaacagaaagaggaagtgatgttatc
atcacgctagtaggaaatagaacagatcttgctgacaagaggcaagtgtcagttgaggag
ggagagaggaaagccaaagggctgaatgttacgtttattgaaactagggcaaaagctgga
tacaatgtaaagcagctctttcgacgtgtagcagcagctttgccgggaatggaaagcaca
caggacggaagcagagaagacatgagtgacataaaactggaaaagcctcaggagcaaaca
gtcagcgaagggggttgttcctgctactctcccatgtcatcttcaacccttcctcagaag
cccccttactctttcattgactgcaaagaaccagtggaagaatttaaatttggcactacg
atcaaaactactgaattagcagaaataacgatatctaaagcttaccagcaaaagaaccct
cagcagaatagcaaaaactttgctcaggacatttga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_3|79_aa
MRLGLAVESKELMHALNRWLDNAVIDEITPKLIRDLPNSCTYRKALGEMVVQQESRNVTI
AIIRPSTVGATWHDPFPDV

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_3|240_bp
atgagattgggcttagcagtggagagcaaagagctcatgcatgctttgaacaggtggtta
gataacgctgttattgacgagatcacacccaagctgatcagagatctgcccaattcttgc
acctaccgcaaggccttgggagaaatggtggtgcagcaggagagcagaaatgtaaccatc
gccatcataaggccctccactgtgggagcgacgtggcacgaccctttcccagatgtatag

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_4|245_aa
MFAKGKGSLVPSDGQAGEKLALYVYEYLLQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPD
QNGKPASGRSSWDTAIAAQFHGSRTTTRPSPHGRINAENEPSPRHGAHGSQPTELRQRHE
TTTQFPRPPMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPTMPSP
SDSTNSSDIYTMINPVPPGGSRSNFPMGPGSDGRMGSMGGMEPHHMNGLLGSGDIDGFQK
ILLTT

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_4|738_bp
atgtttgccaaaggcaaaggctccttggtgccctcggacgggcaggctggggaaaagtta
gctttatacgtctacgaatatttactgcagcctccacctcacaatcctagcagcatgatg
ggaccccacagtcagcctttcatgtcaccgcgatacgcaggcggccccaggccccccgat
cagaatgggaaaccagcctccgggaggagttcctgggacacagccattgctgcccaattc
catggatcccgcacgacaacaaggccatccccacatgggaggatcaatgcagagaatgaa
ccctccccgaggcatggggcccacgggtcccagcccacagaattacggcagcggcatgag
accaccacgcaattccctcggccccccatgcccgggattaacatgggcccgggagccggc
agaccctggcccaatcctaacagtgctaactcaattccatactcctcctcatcacctggt
acctatgtgggaccccctggtggtggcggccctccaggaacacccactatgcccagtccc
tcagattcaacaaattccagcgacatctacacaatgattaatccggtgccgcctggaggc
agccggtccaacttcccgatgggtcccggctcggacggtcggatgggcagcatgggcggc
atggagccacaccacatgaacggattgttagggtcaggcgacatagatggcttccaaaaa
attctcctaacaacgtaa

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_5|273_aa
MAEYEELRSTAPSECSSSPATEQSWMENDFDKLREEGFRQSNYSKLQEEIQTNGKEVKNC
EKKLDKSITRITNAEKSLKELMELKRTSRLPAAALTAGPDVPADAADSACAMGLPTLEFS
DSYLDSPDFRERLQCQEIELERTNKFIKELIKEGSPLTGALRTGNVDCLPSSLTLSPFPK
EHTSTQVGDLSMAVQKFSQSLQDFQFECIDNAQTDDEISITQSLKEFARLLIAVEEERRR
LIQNANDVLIAPLEKFRKEQIGAAKGGKKFDKE

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_5|822_bp
atggccgaatatgaagagctccggtctacagctcccagcgaatgcagctcctcaccagca
acggaacaaagctggatggagaatgactttgacaagctgagagaagaaggcttcagacaa
tcaaactactccaagctacaggaggaaattcaaaccaatggcaaagaagttaaaaactgt
gaaaaaaaattagacaaatcgataactagaataaccaatgcagagaagtccttaaaggag
ctgatggagctgaaacgcacgtcgcggctgccagctgctgccctgaccgccggcccagac
gtgcccgcggacgccgctgacagcgcctgtgccatggggctgcctactctggagttcagc
gattcctacttggacagcccggatttcagggagcgcttgcagtgtcaggagattgaactg
gagcgaaccaacaagttcatcaaggagctcattaaggagggctctccgctcactggggcg
ttgaggacaggtaatgttgattgcctacccagttcccttaccctttcaccctttccaaag
gaacacacctctacccaggttggggatctgtctatggcagtgcagaaattttcccagtca
ttacaagatttccaatttgaatgtattgataatgctcaaacagatgatgaaattagtatt
actcagtcactaaaagaatttgcaaggctactcattgcagtagaagaagaaaggcgaaga
ctgatccaaaacgctaatgatgtattaattgcaccacttgagaaatttcgaaaagaacag
attggtgcagcaaaaggtggaaagaagtttgacaaagagtga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_6|134_aa
MGFLHVGQAGLELPTSGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPA
IIYDFYLWLTGRKPSKGTIASTVATTYALPSDTRVRLHIHVLCNKKALNLNGTSIELAHR
QLRSRNTLVCVQVK

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_6|405_bp
atggggtttctccacgttggtcaggctggtcttgaactcccgacctcaggtttccaggtc
ttggcaacctttgaaattccaattccatttgagagagctttgacgaggccatatgctgat
ttcaccaccagcaacttcagaacccagtactggaatgccatcagccagcaggcccctgcc
atcatctatgacttctatctgtggctcactggaaggaaacccagcaaagggaccatcgcc
agcactgtggctacaacatatgccttgccatcagatacaagagttaggcttcatatccac
gtcctgtgcaataaaaaagctttaaatctgaatggaacatccatagaactagctcacaga
caactcagaagcaggaacactttggtctgtgttcaagtaaaatga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_7|122_aa
MPACPRPDQPSRAATHRCPSSQLRAMWPSESILPSISTFTSPYRKRRLQAVAAAATALGL
APPVARGLLVVAPASPLELLEATPKRGSCSWPGNCNTRHTYVATARPTARILPCRHICAA
HK

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_7|369_bp
atgcccgcctgtccgcgccccgaccagccctcccgggcagccactcaccggtgtccgtct
tcccagcttcgcgccatgtggccaagtgaatccatcctgccgtccatctccactttcacc
agcccgtaccgcaagcgccgcctgcaggcggtggccgccgccgccacagccctgggcctg
gcacccccagtcgcccgcggcctccttgtggtggcaccggcgtccccgctggagctgctg
gaggccacgcccaagcgtggcagctgctcctggcctgggaactgcaacaccaggcatacc
tatgtggctacggccagacctacagcaagaattctcccctgcaggcacatctgcgcagca
cacaagtga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_8|169_aa
MVIVGLAAGVLLVGPGDGGLISEGVVREDLMCGVWSAGTWSVGTAERCLEKPGALHVIEG
PLDSWDGPVMPNGPVKNHKGEQQEVPSKHPQMALEICLCLDFLYYPFLRGDASAGPVTWC
TTSDTIILQQHRTLTSQGVDDFLKAKATFKASDFIDALVLSKFLEALIE

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_8|510_bp
atggtcattgttggcctggcagcgggggtcttgttagtgggtcctggtgatgggggtcta
atcagtgagggtgtggtcagggaagacctgatgtgtggggtctggtcagcaggaacctgg
tcagtggggactgctgagcgctgcttggagaagccaggtgcattgcacgttatcgagggc
cctctggacagctgggatggcccagtgatgcccaatggcccggtcaaaaatcataaagga
gaacagcaagaggtccccagcaaacatccacagatggccttggaaatctgcctgtgcttg
gacttcctgtactacccattcctgaggggcgatgcttctgcagggcctgtgacttggtgc
acaacttcagacaccatcatcttgcagcagcaccgcaccctcactagccagggtgttgat
gacttcctcaaggccaaggccacattcaaggcttcggactttattgatgcgcttgtgctg
agcaagttcctagaagctttaattgaatga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_9|128_aa
MHKPQCNNCATNGATERKRAVGSGAGPWGLAEKNGLLGQLHGPAAVCILRTLLPASLQPQ
LQPWLNDAQCGKATGIQNSPVHERQLWVLNAAKPQVQICPRPWEPSPHSPVPWMWDKDSK
RMILELSD

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_9|387_bp
atgcacaagcctcagtgcaacaactgtgctacaaatggagccacagagaggaaacgagca
gtaggctcaggagccgggccctggggcctagcagagaagaatggtttactgggccagctc
catggccctgctgctgtgtgcatcctcaggacactgctgcctgcatccctgcagccccag
ctccagccatggctgaatgatgcacagtgtggaaaagctacaggcattcaaaacagccct
gtccatgagaggcagctgtgggtgctgaacgctgcaaagccacaggtgcagatctgccca
aggccttgggagcccagccctcacagccctgtgccatggatgtgggacaaggattcaaaa
aggatgattttggagctgtcggattga

>gi568815596f:129880116_130080877|GENSCAN_predicted_peptide_10|496_aa
GQLQYFMKIKISSSDEQNDTQKQFCEEQNTGILHDEILIHEEKQIEVVEKMNSELSLSCK
KEKDILHENSTLREEIAMLRLELDTMKHQSQLREKKYLEDIESVKKRNDNLLKALQLNEL
TMDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQ
SKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEATLNPKANREKM
TQIMFETFNTPAMYVAIQAVLSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRLD
LAGRELPDYLMKILTEHGYRFTTMAEREIVRDIKEKLCYVALDFEQEMATVASSSSLEKS
YELPDGQVITIGNERFRCPEALFQPCFLGMESCGIHETTFNSIMKSDVDIRKDLYTNTVL
SGGTTMYPGMAHRMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASLSTFQQMWISK
QEYDESGPSIVHRKCL

>gi568815596f:129880116_130080877|GENSCAN_predicted_CDS_10|1491_bp
ggacagctccagtatttcatgaaaattaaaatttcttctagtgacgaacaaaatgatact
cagaagcaattttgtgaagaacagaacactggaatattacacgatgagattctgattcat
gaagaaaagcagatagaagtggttgaaaaaatgaattctgagctttctcttagttgtaag
aaagaaaaagacatcttgcatgaaaatagtacgttgcgggaagaaattgccatgctaaga
ctggagctagacacaatgaaacatcagagccagctaagagaaaagaaatatttggaggat
attgaaagtgtgaaaaaaaggaatgataatcttttaaaggctctacaattgaatgagctc
accatggatgatgataccgctgtgctcgtcattgacaacggctctggcatgtgcaaggcc
ggctttgcgggcgacgatgccccccgggctgtcttcccttccatcgtggggcgccccagg
cagcagggcatgatggggggcatgcatcagaaagagtcctatgtgggcaaggaggcccag
agcaaaagaggcatcctgaccctgaagtaccccatggaacacggcatcatcaccaactgg
gatgacatggagaagatctggcaccacaccttctacaacgagctgcgtgtggctcccgag
gagcaccccgtcctgctgaccgaggccaccctgaaccctaaggccaaccgcgagaagatg
acccagatcatgtttgagaccttcaacaccccagccatgtacgtggccatccaggctgtg
ctgtccctgtacacctctggccgtactactggcatcgtgatggactctggtgacggggtc
acccacactgtgcccatctatgaggggaatgccctcccccatgccaccctgcgcctagac
ctggctgggcgggaactgcctgactacctcatgaagatcctcaccgagcatggctatagg
ttcaccaccatggccgagcgggaaatcgtgcgtgacatcaaagagaagctgtgctatgtt
gccctggacttcgagcaggagatggccacggtggcctccagctcctccctagagaagagc
tacgagctgcccgatggccaggtcatcaccatcggcaacgagcggttccgctgccccgag
gcgctcttccagccttgcttcctgggcatggaatcctgtggcatccatgaaactaccttc
aactccatcatgaagtctgatgtggacatccgcaaagacctgtacaccaacacagtgctg
tctggcggcaccaccatgtaccctggcatggcccacagaatgcagaaggagatcgctgcc
ctggcgcctagcatgatgaagatcaggatcattgctcctcccaagcgcaagtactccgtg
tgggtcggtggctccatcctggcctcgctgtccaccttccagcagatgtggatcagcaag
caggagtatgatgagtcaggcccctccattgtccaccgcaaatgcttgtag