GENSCAN 1.0	Date run:  7-Nov-116	Time: 00:55:59

Sequence gi568815595r:48058948_48287947 : 229000 bp : 47.21% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  15163  15295  133  0  1   78   47    67 0.611   1.90
 1.02 Intr +  29691  29892  202  1  1  106   75    58 0.958   4.64
 1.03 Intr +  30120  30323  204  0  0   79   39   190 0.947  11.52
 1.04 Term +  33091  33199  109  1  1   70   38   109 0.883   2.08
 1.05 PlyA +  34026  34031    6                               1.05

 2.02 PlyA -  35805  35800    6                               1.05
 2.01 Sngl -  62268  61924  345  0  0   70   55   205 0.789  11.44
 2.00 Prom -  86302  86263   40                              -1.56

 3.14 PlyA -  86770  86765    6                               1.05
 3.13 Term - 100138  99998  141  1  0  111   55   226 0.999  19.53
 3.12 Intr - 100508 100397  112  1  1   83  110    53 0.999   7.38
 3.11 Intr - 105490 105360  131  1  2   74   84   127 0.998  10.39
 3.10 Intr - 106787 106689   99  2  0   90   86   187 0.999  19.01
 3.09 Intr - 106946 106884   63  2  0   89   87    19 0.637   0.81
 3.08 Intr - 108997 108899   99  1  0   85   86    78 0.951   7.61
 3.07 Intr - 115510 115337  174  1  0   55   88    80 0.917   4.84
 3.06 Intr - 118495 118424   72  1  0   90   70    22 0.509   0.20
 3.05 Intr - 119041 118907  135  1  0   89   81   139 0.910  14.06
 3.04 Intr - 121947 121774  174  0  0   65   80    78 0.636   4.84
 3.03 Intr - 124083 123982  102  0  0   69   82    81 0.806   5.97
 3.02 Intr - 124889 124853   37  1  1   78   95   -24 0.480  -4.44
 3.01 Init - 129000 128831  170  0  2  105  110   207 0.999  22.91
 3.00 Prom - 132764 132725   40                              -3.66

 4.05 PlyA - 133210 133205    6                               1.05
 4.04 Term - 146444 146336  109  1  1   94   39    88 0.254   2.48
 4.03 Intr - 147412 147348   65  1  2  131   27    44 0.127   0.12
 4.02 Intr - 156514 156431   84  1  0  114   72    81 0.298   9.12
 4.01 Init - 156916 156713  204  1  0   72   96   102 0.862   8.25
 4.00 Prom - 158084 158045   40                              -7.66

 5.00 Prom + 164513 164552   40                              -6.16
 5.01 Init + 164565 164765  201  2  0  100   89   402 0.809  38.38
 5.02 Intr + 165407 165514  108  1  0   71   60   125 0.997   8.48
 5.03 Intr + 165656 165727   72  1  0   77  113    71 0.981   8.10
 5.04 Term + 166346 166477  132  1  0   64   36   108 0.686   1.29
 5.05 PlyA + 166517 166522    6                               1.05

 6.00 Prom + 172939 172978   40                              -5.96
 6.01 Init + 175527 175658  132  2  0   49  110   182 0.527  16.71
 6.02 Intr + 197674 197796  123  0  0   99    8    84 0.016   2.28
 6.03 Intr + 201866 201992  127  1  1   34   82    34 0.015  -2.35
 6.04 Intr + 208968 209824  857  1  2   99   -6   260 0.077   8.78
 6.05 Term + 209966 210835  870  1  0   53   45   406 0.118  25.44
 6.06 PlyA + 214488 214493    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 151771 152094  324  0  0   72   55   185 0.802   9.61
S.002 Sngl - 197991 197749  243  0  0   89   41   175 0.834   6.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_1|215_aa
MEHYAAIKKDEFMSFVGTWMKLETIILSKLSQGQKTKHRMFSLIGRRPPPFHASGGPRGV
PSCRRARLGQPRDSEEAAPPIGPRLRLHLPAAAETELGQKGARRAPGRAVRRAARAAGGW
GEVRLGALASRLRPANAEADRRPIDCLRCSMMAVALSQSLGARSEESARVGAHADRATSG
GKEHSLQFQGAQDEKHRTTYSGHTAYGIALLHKQQ

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_1|648_bp
atggaacactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatg
aagctggaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatg
ttctcactcataggccggcggccaccgcccttccacgcctcgggcgggccccgtggggta
cccagctgccgcagggcaaggctcgggcagccccgggacagtgaggaggccgcccctcca
atcggaccccgcctgcggctgcacctacccgccgccgccgagacggagctggggcagaag
ggagccaggagagcgccgggaagagccgtgaggagagctgcccgagccgcgggcggttgg
ggcgaggtgcgcctgggggctctagcctcccgcctgcggcctgcgaatgccgaagcggac
cgcaggccgatcgactgccttcgctgttctatgatggccgtcgctctctctcagagtctg
ggcgcccggagcgaggagagtgcgagagtcggcgcacacgcggaccgggccaccagcggt
ggaaaagaacattccctccagttccagggtgcccaggatgaaaagcatagaaccacctat
tctgggcatactgcctatgggattgccctgctccacaagcagcagtaa

>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_2|114_aa
MVHYSLDPENPAKSCKSRGSNLRVHFKNTRETAQAIMDMHVRKATKYLKDVTLQKQCVPF
RHYNGRVGRCTQAKQWGWTQNWCPKKSAEFLLHMLKNAESNAEFKGFDVDSLVI

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_2|345_bp
atggttcactattcacttgacccagagaaccccgcaaaatcatgcaaatcaagaggttcc
aatcttcgtgttcactttaagaacactcgtgaaactgcccaggccatcatggatatgcat
gtacgaaaagccacgaagtatctgaaagatgtcactttacagaaacagtgcgtaccattc
cgacattacaacggtagagttggcaggtgtacccaggccaagcagtggggctggacacaa
aattggtgtcccaaaaagagtgctgaatttttgctgcacatgcttaaaaatgcagagagt
aatgctgaatttaaaggtttcgatgtagattctctggtcatttga

>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_3|502_aa
MELGPEPPHRRRLLFACSPPPASQPVVKALFGASAAGGLSPVTNLTVTMDQLQGLGSLEN
PMRRIHSLPQKLLGCSPALKRSHSDSLDHDIFQLIDPDENKENLRPELVFMDSRCLNYVL
QEAFEFKKPVRPVSRGCLHSHGLQEGKDLFTQRQNSAPARMLSSNERDSSEPGNFIPLFT
PQSPVTATLSDEDDGFVDLLDGENLKNEEETPSCMASLWTAPLVMRTTNLDNRCKLFDSP
SLCSSSTRSVLKRPERSQEESPPGSTKRRKSMSGASPKESTNPEKAHETLHQSLSLASSP
KGTIENILDNDPRDLIGDFSKGYLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVI
IDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMC
RYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKEDLKKFR
TKSRTWAGEKSKREMYSRLKKL

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_3|1509_bp
atggaactgggcccggagcccccgcaccgccgccgcctgctcttcgcctgcagcccccct
cccgcgtcgcagcccgtcgtgaaggcgctatttggcgcttcagccgccgggggactgtcg
cctgtcaccaacctgaccgtcactatggaccagctgcagggtctgggcagccttgaaaat
cctatgagaagaatacattccctacctcagaagctgttgggatgtagtccagctctgaag
aggagccattctgattctcttgaccatgacatctttcagctcatcgacccagatgagaac
aaggaaaatctgaggcctgagttggttttcatggacagtagatgtctcaactatgtcttg
caggaagcctttgagtttaagaagccagtaagacctgtatctcgtggctgcctgcactct
catggactccaggagggtaaagatctcttcacacagaggcagaactctgccccagctcgg
atgctttcctcaaatgaaagagatagcagtgaaccagggaatttcattcctctttttaca
ccccagtcacctgtgacagccactttgtctgatgaggatgatggcttcgtggaccttctc
gatggagagaatctgaagaatgaggaggagaccccctcgtgcatggcaagcctctggaca
gctcctctcgtcatgagaactacaaaccttgacaaccgatgcaagctgtttgactcccct
tccctgtgtagctccagcactcggtcagtgttgaagagaccagaacgatctcaagaggag
tctccacctggaagtacaaagaggaggaagagcatgtctggggccagccccaaagagtca
actaatccagagaaggcccatgagactcttcatcagtctttatccctggcatcttccccc
aaaggaaccattgagaacattttggacaatgacccaagggaccttataggagacttctcc
aagggttatctctttcatacagttgctgggaaacatcaggatttaaaatacatctctcca
gaaattatggcatctgttttgaatggcaagtttgccaacctcattaaagagtttgttatc
atcgactgtcgatacccatatgaatacgagggaggccacatcaagggtgcagtgaacttg
cacatggaagaagaggttgaagacttcttattgaagaagcccattgtacctactgatggc
aagcgtgtcattgttgtgtttcactgcgagttttcttctgagagaggtccccgcatgtgc
cggtatgtgagagagagagatcgcctgggtaatgaataccccaaactccactaccctgag
ctgtatgtcctgaaggggggatacaaggagttctttatgaaatgccagtcttactgtgag
ccccctagctaccggcccatgcaccacgaggactttaaagaagacctgaagaagttccgc
accaagagccggacctgggcaggggagaagagcaagagggagatgtacagtcgtctgaag
aagctctga

>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_4|153_aa
MRATDKSLEQGPLSRKRQNQDLDSMPPPTNLAVLLMGTCGRIQALPPALCSKLEMQMWAA
MRVEIWDRQVKNCRGYFSAAEDPKKLPICESQNFAGAVPLLLWLLKTRNKDSKETLGKIR
STPSYPNLAGNWELGELACALLSSPVPLEPMQA

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_4|462_bp
atgagggccacagataaatcacttgaacaaggacccctatccagaaaacggcagaaccag
gacttggactcaatgcccccacccaccaaccttgctgtccttctcatggggacatgtgga
agaattcaagccctgcctcctgccctctgcagcaaactggaaatgcagatgtgggctgcc
atgagggtggaaatatgggacaggcaagtgaagaactgccgggggtacttcagtgctgct
gaggaccccaagaagttgcccatctgtgaatcccaaaactttgctggggctgtacccctg
ctcctctggctgcttaagaccaggaacaaagactccaaggagactctgggcaaaattagg
agcacccccagctacccgaacctagcgggcaactgggaacttggagagctggcctgtgcc
ctcctctccagcccagtgcccttggaacccatgcaggcatag

>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_5|170_aa
MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD
LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS
FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_5|513_bp
atgaagacccaaagggatggccactccctggggcggtggtcactggtgctcctgctgctg
ggcctggtgatgcctctggccatcattgcccaggtcctcagctacaaggaagctgtgctt
cgtgctatagatggcatcaaccagcggtcctcggatgctaacctctaccgcctcctggac
ctggaccccaggcccacgatggatggggacccagacacgccaaagcctgtgagcttcaca
gtgaaggagacagtgtgccccaggacgacacagcagtcaccagaggattgtgacttcaag
aaggacgggctggtgaagcggtgtatggggacagtgaccctcaaccaggccaggggctcc
tttgacatcagttgtgataaggataacaagagatttgccctgctgggtgatttcttccgg
aaatctaaagagaagattggcaaagagtttaaaagaattgtccagagaatcaaggatttt
ttgcggaatcttgtacccaggacagagtcctag

>gi568815595r:48058948_48287947|GENSCAN_predicted_peptide_6|702_aa
MNTVAADYTGLTAPFMTLVAAHEKRPFKDEHRWNRQVKQTHAGQACDLSGQHASMGLDEL
AKQQNIIIVLLVVQVPVADGALARGGPVTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLEN
LRNLVSLAESKPEVHTCPSCPLAFGSQQFLSQDELHNHPIPGFHAGNQLHPGNPCPEDQP
QSQHPSDKNHRGAEAEDQRVEGGVRPLFWSTNERGALVGFSSLFQRPPISSWGGNRILEI
QLSPAQNASSEEVDRISKRAETPGFGAVTFGECALAFNQKSNLFRQKAVTAEKSSDKRQS
QVCRECGRGFSRKSQLIIHQRTHTGEKPYVCGECGRGFIVESVLRNHLSTHSGEKPYVCS
HCGRGFSCKPYLIRHQRTHTREKSFMCTVCGRGFREKSELIKHQRIHTGDKPYWTHSEVK
PHVCEECGHGFSQKSSLKSHRRTHSGEKPYVCGECGRGFSRRIVLNGHWRTHTGEKPYTC
FECGRNFSLKSALSVHQRIHSGEKPYACTECGQGFITKSQLIRHQRTHTGEKPYVCGECG
RGFIAQSTLHYHRSTHSKEKPYVCSQCGRGFCDKSTLLAHEQTHSGEKPYVCGECGRGFG
RKILLNRHWRTHTGEKPYACIECGRNFSHKSTLSLHQRIHSGEKPYACVECGQSFRRKSQ
LIIHQKIHSGKSFRGARSEDVILATSQPSATPAEMLREKPCL

>gi568815595r:48058948_48287947|GENSCAN_predicted_CDS_6|2109_bp
atgaacactgtggcagcagactacactggactcacagccccgttcatgactcttgtggct
gcccatgaaaaacgaccattcaaagatgaacatcgatggaatcgacaagttaaacagacc
catgctggccaggcctgtgatctttcggggcagcatgcctccatggggctggatgaactg
gctaagcagcaaaacatcatcatagttttacttgtggttcaggttccagtggcagatggg
gcactggccagagggggaccagtgactttcgaggatgtggctgtgcttttcactgaggca
gagtggaagagactgagccttgagcagaggaacctatacaaagaagtgatgctggaaaat
ctcaggaatctggtctcattggcagaatcaaagccagaagtccatacctgcccttcttgc
cctctggcctttggcagtcagcagttcctcagccaagatgagctacacaatcatcctatt
ccaggtttccatgcaggaaatcaactccacccaggaaatccctgcccagaggatcagcca
cagtcacaacatccttctgataaaaatcacaggggggctgaagcagaagatcaacgagtg
gaaggaggcgtcagacccttgttttggagtacaaatgaaaggggggctttagtgggtttc
tctagcctgttccagagaccaccaataagctcttggggaggcaacagaatattagagata
cagctcagtccagcccagaatgcaagctctgaggaagtagacagaatttccaagagggca
gaaaccccagggtttggagcagtcacgtttggggagtgtgcactagcttttaaccagaag
tcaaacctgttcagacagaaggcagtcacagcagaaaaatcttcagacaaaaggcagtca
caggtgtgcagggagtgtgggcgaggctttagcaggaagtcacagctcatcatacaccag
aggacacacacaggagaaaagccttatgtctgcggagagtgtgggcgaggctttatagtt
gagtcagtcctccgcaaccacctgagtacacactccggggagaaaccttatgtgtgcagc
cattgtgggcgaggctttagctgcaagccatacctcatcagacatcagaggacacacaca
agggagaaatcgtttatgtgcacagtgtgtgggcgaggctttcgtgaaaagtcagagctc
attaagcaccagagaattcacacgggggataagccttattggacacattcagaggtgaaa
cctcacgtgtgtgaggagtgtgggcatggatttagccagaagtcgtcgctcaaatcacat
cggagaacacactcaggggagaagccttatgtgtgtggggaatgtgggcggggatttagc
cggaggatagtcctcaatggacactggaggacacacacgggagagaagccttacacgtgc
tttgagtgtgggcgaaactttagcctcaagtccgctcttagtgtacatcagaggatacac
tctggggagaagccttatgcatgcacggagtgtgggcaaggctttatcacgaaatcacag
ctcatcagacaccagaggacacacacaggagaaaagccttatgtctgcggagagtgtggg
cgaggctttatagctcagtcaaccctccactaccaccggagtacacactccaaggaaaaa
ccttatgtgtgcagccagtgtgggcgaggcttttgtgataaatcaactctcctcgcacac
gagcagacacattcaggggagaagccttatgtgtgtggggaatgtgggcggggatttggc
cggaagatactcctcaacagacactggaggacacacacaggagagaaaccttacgcatgc
atcgagtgtgggcgaaactttagccacaagtccactctcagcttacatcagaggatacac
tcgggggagaagccttatgcatgcgtggagtgtgggcaaagctttaggagaaagtcacag
ctcatcatacaccagaagatacactcggggaaaagctttagaggtgcaaggagtgaggat
gtgattttagcaacaagtcagccatcagccacaccagcggaaatgcttagggagaagcct
tgtttgtaa