GENSCAN 1.0	Date run:  6-Nov-116	Time: 05:37:18

Sequence gi568815595r:186050093_186420459 : 370367 bp : 44.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 PlyA -     85     80    6                               1.05
 1.07 Term -   1891   1826   66  1  0   57   42   102 0.965   0.44
 1.06 Intr -   2039   1938  102  2  0  114  105   210 0.999  25.67
 1.05 Intr -   7152   6983  170  1  2   76   69   167 0.999  13.27
 1.04 Intr -   7399   7331   69  2  0   85  115    90 0.999  10.55
 1.03 Intr -  14426  14325  102  0  0  103  116    37 0.946   8.15
 1.02 Intr -  15934  15721  214  1  1  108   76   115 0.940  10.59
 1.01 Init -  17033  17010   24  2  0   86   77     0 0.720  -2.32
 1.00 Prom -  18117  18078   40                              -3.46

 2.04 PlyA -  19727  19722    6                               1.05
 2.03 Term -  29912  29756  157  1  1   72   44   117 0.623   3.11
 2.02 Intr -  31083  30954  130  1  1   95   97   142 0.973  15.55
 2.01 Init -  38065  37963  103  1  1   77   23   131 0.745   5.90
 2.00 Prom -  39723  39684   40                              -6.46

 3.00 Prom +  46275  46314   40                              -2.36
 3.01 Init +  52702  52757   56  0  2   59  106    61 0.872   6.08
 3.02 Intr +  58200  58322  123  0  0   97   85    34 0.699   3.70
 3.03 Term +  58877  59084  208  2  1  110   41   166 0.755  10.91
 3.04 PlyA +  60139  60144    6                               1.05

 4.31 PlyA -  61243  61238    6                              -0.45
 4.30 Term -  62286  61987  300  0  0   37   54   132 0.840  -0.08
 4.29 Intr -  64076  63938  139  1  1   77  100   107 0.941  11.27
 4.28 Intr -  85284  85229   56  0  2   94   72    55 0.128   2.28
 4.27 Intr - 111571 111511   61  0  1   75  113    47 0.683   4.64
 4.26 Intr - 114926 114806  121  0  1   91   85    90 0.209   8.55
 4.25 Intr - 138287 138110  178  2  1   85  121   216 0.998  24.09
 4.24 Intr - 139901 139762  140  0  2   26   33    92 0.052  -2.32
 4.23 Intr - 154918 154774  145  1  1   63   91    81 0.410   5.76
 4.22 Intr - 161793 161703   91  2  1   58  107   154 0.051  14.30
 4.21 Intr - 186032 185892  141  1  0   65   67    90 0.161   4.07
 4.20 Intr - 192476 192412   65  2  2   91  115    28 0.293   3.32
 4.19 Intr - 201827 201667  161  0  2   73   89   226 0.745  20.91
 4.18 Intr - 203090 203001   90  0  0  110  105    39 0.991   7.77
 4.17 Intr - 207847 207762   86  0  2   91   99    38 0.956   4.66
 4.16 Intr - 210421 210347   75  0  0  128   51   112 0.996  10.13
 4.15 Intr - 211686 211607   80  0  2   53  102    43 0.940   0.55
 4.14 Intr - 215214 215155   60  0  0   90   82    82 0.970   6.73
 4.13 Intr - 217685 217593   93  2  0  120  114    48 0.999  10.76
 4.12 Intr - 218825 218709  117  2  0  109   76   119 0.562  13.46
 4.11 Intr - 222251 222163   89  0  2  103   73    40 0.489   3.69
 4.10 Intr - 225572 225455  118  2  1  101   70   133 0.898  12.84
 4.09 Intr - 229881 229759  123  0  0   78   84   161 0.999  15.48
 4.08 Intr - 230652 230578   75  0  0  114   76    52 0.983   6.31
 4.07 Intr - 234617 234568   50  0  2   77  115    77 0.884   7.70
 4.06 Intr - 234875 234837   39  0  0   96   40    60 0.532   0.20
 4.05 Intr - 238788 238618  171  1  0   89   84   107 0.952  10.31
 4.04 Intr - 247391 247329   63  0  0  126  119    76 0.987  13.19
 4.03 Intr - 248137 247972  166  1  1  106   86   160 0.989  17.13
 4.02 Intr - 256885 256809   77  2  2   77   94    64 0.630   5.13
 4.01 Init - 270367 270301   67  1  1   59   82    28 0.009   0.53
 4.00 Prom - 281754 281715   40                              -2.86

 5.00 Prom + 286035 286074   40                              -2.36
 5.01 Init + 301216 301222    7  0  1   63  116     0 0.223   1.47
 5.02 Term + 305185 305711  527  2  2   -1   39   440 0.426  24.63
 5.03 PlyA + 306035 306040    6                               1.05

 6.04 PlyA - 306139 306134    6                               1.05
 6.03 Term - 315469 315453   17  2  2  119   54     3 0.225  -1.60
 6.02 Intr - 315729 315677   53  2  2   88  101    54 0.206   5.25
 6.01 Init - 322821 322745   77  0  2   54   89    70 0.134   4.26
 6.00 Prom - 329062 329023   40                              -3.26

 7.00 Prom + 329707 329746   40                              -2.46
 7.01 Init + 332661 332754   94  2  1   48  100    50 0.034   2.74
 7.02 Intr + 349251 349325   75  1  0  110  105    55 0.216   8.89
 7.03 Term + 367035 367111   77  1  2   77   36   106 0.165   2.30
 7.04 PlyA + 369283 369288    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  97656  97823  168  2  0   95   37   109 0.882   6.03
S.002 Init - 161792 161703   90  2  0   74  107   148 0.945  15.79
S.003 Term - 335219 334832  388  1  1  102   47   174 0.913   9.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_1|248_aa
MGFWHVGQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAH
GFQSPMGIKQEPRDYCVDSETIDRIVSTFAFLSEVPNCQSSYMRGGYFSSSHEGFSYEKD
PRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWT
GRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKEKVQGFCSETGDR
RYEEILAP

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_1|747_bp
atggggttttggcacgttggccagccaggagttcctggagataatcgccccagttaccat
cggcaaatgtcagaacctattgtccctgcagctcccccgccccctcagggattcaaacaa
gaataccatgacccactctatgaacatggggtcccgggcatgccagggcccccagcacac
gggttccagtcaccaatgggaatcaagcaggagcctcgggattactgcgtcgattcagaa
actattgacaggattgtgtccacctttgctttcctttcagaagtgcctaactgccagtca
tcctacatgagagggggttatttctccagcagccatgaaggtttttcatatgaaaaagat
ccccgattatactttgacgacacttgtgttgtgcctgagagactggaaggcaaagtcaaa
caggagcctaccatgtatcgagaggggcccccttaccagaggcgaggttcccttcagctg
tggcagttcctggtcacccttcttgatgacccagccaatgcccacttcattgcctggaca
ggtcgaggcatggagttcaagctgatagaaccggaagaggttgctcggcgctggggcatc
cagaagaaccggccagccatgaactatgacaagctgagccgctctctccgctattactat
gaaaagggcatcatgcagaaggaaaaagtccagggcttctgtagtgagactggtgatcgt
cgctacgaggaaattttagccccctaa

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_2|129_aa
MSLGQMKVNETEEGTRKTPKQNVKDGNCWKAVKALVLHAPPPTKIKRELHSPSSELSSCS
HEQALGANYGEKCLYNYWQLCPPQGMPLQLAQFKVWAPPPPPIRFQSLDHSSKHLRSPDH
HISPCRCQR

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_2|390_bp
atgagtctgggccagatgaaggtaaatgaaactgaagaagggacaaggaaaaccccaaaa
cagaacgtgaaggatggcaactgctggaaggcggtcaaagccttggtgcttcatgcccca
cctccaaccaagatcaaacgggagctgcacagcccctcctctgagctgtcgtcttgtagc
catgagcaggctcttggtgctaactatggagaaaagtgcctctacaactattggcaactc
tgcccacctcagggcatgcccctgcagctggcccagttcaaggtgtgggccccgcccccg
ccccccattcgcttccagagcctggaccacagcagcaaacatttgcggtcccccgaccac
cacatcagcccctgcagatgccaaagatga

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_3|128_aa
MTGVKLVLNSRLWKALMEKPLFRCAPIFSSRRTAGRPQPAGWEQGDWMSTFHHLKLARPA
GPGGAGALTHARSGPGRLGERLGRTAPKTVNRSAHQRLDSAPQLPTRLERWPGPPRLAAP
PAAIGPRP

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_3|387_bp
atgactggagtgaagctggtcctgaactcgaggctgtggaaagcgctcatggaaaagccg
ctgttccggtgcgccccgattttctcgagtcgccgcacagccggacgccctcagcctgct
gggtgggagcagggcgactggatgtccactttccaccacctgaaacttgcaaggcctgcc
ggccccggcggcgcaggcgcgctcacgcacgcgcgcagcgggcctgggcgcctgggcgaa
aggctgggccgaaccgctccgaagacggtgaaccgctccgcgcaccagcggctggactct
gcgccgcagctgccaaccaggctggagcgctggcccggccccccgcggctcgctgctccg
cccgccgccattggcccgcggccctag

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_4|1078_aa
MGEERWVSLTPEEFDQLQKYSEYSSKKIKDALTEFNEGGSLKQYDPHEPISYDVFKLFMR
AYLEVDLPQPLSTHLFLAFSQKPRHETSDHPTEGASNSEANSADTNIQNADNATKADEAC
APDTESNMAEKQAPAEDQVAATPLEPPVPRSSSSESPVVYLKDVVCYLSLLETGRPQDKL
EWNYTHDLDFISHIVMFRLYDSDENGLLDQAEMDCIVNQMLHIAQYLEWDPTELRPILKE
MLQGMDYDRDGFVSLQEWVHGGMTTIPLLVLLGMDDSGSKGDGRHAWTMKHFKKPTYCNF
CHIMLMGVRKQGLCCTYCKYTVHERCVSRNIPGCVKTYSKAKRSGEVMQHAWVEGNSSVK
CDRCHKSIKCYQSVTARHCVWCRMTFHRKCELSTLCDGGELRDHILLPTSICPITRDRPG
EKSDGCVSAKGELVMQYKIIPTPGTHPLLVLVNPKSGGRQGERILRKFHYLLNPKQVFNL
DNGGPTPGLNFFRDTPDFRVLACGGDGTVGWILDCIDKANFAKHPPVAVLPLGTGNDLAR
CLRWGGGYEGGSLTKILKDIEQSPLVMLDRWHLEVIPREEVENGDQVPYSIMNNYFSIGV
DASIAHRFHVMREKHPEKFNSRTEALEEIPFTGSMEVQEAEVGDLDTRDSKSSAKSRLAG
SREGVIDPRMKNKLWYFEFGTSETFAATCKKLHDHIELECWDYMHEPLHLAWFVTFNCPM
EFHENPATIRDEEQKWELSDTAGGNISDGSAEYMCTMVIFIIIIIYLGGGLWRRKEGHSV
WVQKGEQDQLVETRCDGVGVDLSNIFLEGIAILNIPSMYGGTNLWGENKKNRAVIRESRK
GVTDPKELKFCVQDLSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCASVTIRTNKLLP
MQVDGEPWMQPCCTNGKKFYAFMLLCTINLKVRGFHEDKSLPAQDNNSEVWLELLKQVPK
EAQQLSLAWQASSQSPENKEGSLNVIDKELLNTTFNSYKGKDNKRRGAGEVNHKEKKEEE
WREDISKYLKMRSPPWAQELAQVIAGCTLTFNAAAKMAVPRAVPLVQHKPPNSQNQRL

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_4|3237_bp
atgggtgaagaacggtgggtctccctcactccagaagaatttgaccaactccagaaatat
tcagaatattcctccaagaagataaaagatgccttgactgaatttaatgagggtgggagc
ctcaaacaatatgacccacatgagccgattagctatgatgtcttcaagctgttcatgagg
gcgtacctggaggtggaccttccccagccactgagcactcacctcttcctggccttcagc
cagaagcccagacacgagacctctgaccacccgacggagggagccagcaacagtgaggcc
aacagcgcagatactaatatacagaatgcagataatgccaccaaagcagacgaggcctgt
gcccctgatactgaatcaaatatggctgagaagcaagcaccagctgaagaccaagtggct
gcgacccccctggaaccccccgtccctcggtcttcaagctcggaatccccagtggtatac
ctgaaggatgttgtgtgctacctgtccctgctggagacggggaggcctcaggataagctg
gagtggaattacactcatgacctggacttcatcagccacatagtcatgtttcgcctctat
gattcagatgagaacggtctcctggaccaagcggagatggattgcattgtcaaccaaatg
ctgcatattgcccagtacctggagtgggatcccacagagctgaggcctatattgaaggag
atgctgcaagggatggactacgaccgggacggctttgtgtctctacaggaatgggtccat
ggagggatgaccaccatcccattgctggtcctcctggggatggatgactctggctccaag
ggggatgggcggcacgcctggaccatgaagcacttcaagaaaccaacctactgcaacttc
tgccatatcatgctcatgggcgtccgcaagcaaggcctgtgctgcacttactgtaaatac
actgtccacgaacgctgtgtgtccagaaacattcctggttgtgtcaaaacgtactcaaaa
gccaaaaggagtggtgaggtgatgcagcacgcatgggtggaagggaactcctccgtcaag
tgtgaccggtgccacaaaagtatcaagtgctaccagagtgtcaccgcgcggcactgcgtg
tggtgccggatgacgtttcaccgcaaatgtgaattatcaacgttgtgtgacggtggggaa
ctcagagaccacatcttactgcccacctccatatgccccatcacccgggacaggccaggt
gagaagtctgatggctgcgtgtccgccaagggcgaacttgtcatgcagtataagatcatc
cccaccccgggtacccaccccctgctggtcttggtgaaccccaagagtggagggagacaa
ggagaaagaattcttcggaaattccactatctgctcaaccccaaacaagttttcaacctg
gacaatggggggcctactccagggttgaactttttccgtgatactccagacttccgtgtt
ttggcctgtggtggagatgggacagttggctggattttggattgcattgataaggccaac
tttgcaaagcatccaccagtggctgtcctgcctcttggaacaggaaatgaccttgcccgt
tgtctccgctggggaggaggttatgaagggggcagcttgacaaaaatcctgaaagacatt
gagcagagccccttggtgatgctggaccgctggcatctggaagtcatccccagagaggaa
gtggaaaacggggaccaggtcccatacagcatcatgaacaactatttctccattggtgtg
gacgcttccattgcacacagattccatgtgatgagagagaaacatcctgaaaaattcaac
agcaggacagaagctctagaggaaatccccttcactggctccatggaagtccaagaggca
gaggttggggatctggacactagagattcgaagtccagtgccaaatccaggctagcagga
tcaagggagggggtcatagaccccaggatgaagaacaagctgtggtactttgaatttggc
acctcggagacttttgcagcgacctgcaagaaactccacgaccacattgagttggagtgc
tgggattacatgcatgagccactgcacctggcctggttcgtcacttttaactgccctatg
gagttccatgaaaacccagccactatccgtgacgaggagcagaaatgggaactctcagac
actgctggtgggaacatcagtgatggcagtgctgaatacatgtgcacaatggtgatcttc
atcatcatcatcatctatctagggggtggcctatggaggaggaaggagggtcattctgta
tgggttcagaagggagaacaggaccaactggtggaaacaagatgtgatggggttggggtg
gacctgagcaacatcttcctggaaggcattgccattctcaacattcccagcatgtacgga
ggcaccaatctctggggagaaaacaagaagaaccgggctgtgatccgggaaagcaggaag
ggtgtcactgaccccaaagaactgaaattctgcgttcaagacctcagtgaccagctcctt
gaagtggtggggctagaaggagccatggagatggggcagatctacaccggcctgaagagt
gcaggcaggaggctggcccagtgcgcctctgtcaccatcaggacaaacaagctgctgcca
atgcaagtggatggagaaccctggatgcagccatgttgcacgaatgggaagaagttttat
gcctttatgcttctctgtaccatcaacctcaaagttcgtggctttcatgaagacaaatcc
ttgccagcccaggacaataattcagaagtctggctggagttgctgaagcaggttcctaag
gaagcacagcagctctcactggcatggcaagcaagcagccaaagccctgagaacaaggag
ggaagcctcaacgtaatagacaaagaacttctaaatactacctttaactcttataaaggc
aaagataacaaaagaagaggagccggggaggtaaatcataaagagaagaaggaagaagag
tggagagaagatatcagtaaatatttaaaaatgaggagcccaccctgggcccaggagctg
gctcaggtcatcgcaggctgtactctgacttttaatgctgcagccaagatggctgtgcca
agagctgtaccccttgtccagcacaaacctccaaattcccagaatcagagactctga

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_5|177_aa
MEARSSSPPLLSPPTTTTITTITTTNNTTPTTMIITTTTTTITTITTTTTTMNTTPTTMI
ITTIIITPTTTTITTITTTTITSTATTTITTITTTTTLPPLPPPPSPHHYHHHNNHPYYC
HHYHQHHHQHHCPTTTIITPLSPSPAPAPAPASLSYHQHHHHHYHHHHHHYHHLHEK

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_5|534_bp
atggaagcacgatcatcatcaccaccattattgtcaccccccaccaccactaccatcacc
actatcaccaccaccaacaacactactcctaccaccatgatcatcaccaccaccaccact
accatcaccactatcaccaccaccaccaccaccatgaacactactcccaccactatgatc
atcaccaccattatcataacccccacaaccactaccatcaccactatcaccaccaccacc
atcacctccactgccactaccaccatcaccactatcaccaccaccaccaccttaccacca
ttacccccaccaccatcaccccaccactaccaccaccacaataatcacccctactactgc
caccactatcaccagcaccaccaccagcatcactgtcctaccactaccatcattacccca
ttatcaccatcaccagcaccagcaccagcaccagcatcactgtcctaccaccagcatcac
caccaccattaccaccatcatcaccaccactaccatcaccttcatgagaaataa

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_6|48_aa
MRRSSKVEGAWVLTPNRTESTSCYPSGDQASAAGLDDVFPEQHGLFSG

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_6|147_bp
atgaggagaagcagcaaggtggaaggagcctgggtcctgacgcccaacaggactgagtct
acttcctgctaccccagtggagatcaggcatcagctgctggcttggatgatgtgttccca
gagcaacatggtcttttctctggctga

>gi568815595r:186050093_186420459|GENSCAN_predicted_peptide_7|81_aa
MTVIVAVVEVVVVRKALANICRTLENLHVPGSSHGNPIKLPKRSGEQEASKTKMEQVPIA
KEKNVHVYVCNYACVFMSQYV

>gi568815595r:186050093_186420459|GENSCAN_predicted_CDS_7|246_bp
atgacagtgattgttgctgtggtggaggtagttgtagtaagaaaagcattagctaacatt
tgtagaacactggaaaatcttcacgtgccaggaagttcccatggcaaccccattaaattg
cccaaacgcagtggtgagcaggaggcaagtaaaaccaagatggagcaagtgcctatcgcc
aaggaaaaaaatgtccatgtctatgtctgcaactatgcctgtgtcttcatgtctcaatac
gtgtaa