GENSCAN 1.0	Date run:  8-Nov-116	Time: 14:19:43

Sequence gi568815595r:180884643_181088230 : 203588 bp : 38.51% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3077   3463  387  1  0   42   44   312 0.301  19.06
 1.02 Intr +  14713  14850  138  0  0  110   61    36 0.228   2.84
 1.03 Term +  15003  15071   69  2  0  117   36    46 0.227  -0.74
 1.04 PlyA +  15733  15738    6                               1.05

 2.00 Prom +  17089  17128   40                              -4.85
 2.01 Init +  28044  28094   51  2  0  109   79    83 0.398  10.71
 2.02 Intr +  48692  48744   53  1  2  120   97    52 0.993   6.09
 2.03 Intr +  50496  50589   94  0  1   82   87   102 0.998   8.55
 2.04 Intr +  63223  63294   72  0  0   83  100    81 0.993   7.48
 2.05 Intr +  63705  63853  149  2  2   53   69   150 0.998   7.71
 2.06 Intr +  64079  64172   94  2  1   70   99    27 0.996   1.05
 2.07 Intr +  64585  64701  117  0  0   48  100   112 0.996   8.14
 2.08 Intr +  66656  66826  171  1  0   53  107   210 0.999  18.62
 2.09 Intr +  69120  69198   79  2  1  100   74    82 0.988   6.21
 2.10 Intr +  73177  73286  110  2  2   54  105   132 0.993  10.58
 2.11 Intr +  76826  76912   87  1  0   90   76    34 0.753   1.65
 2.12 Intr +  78241  78448  208  0  1   57   53   226 0.927  13.73
 2.13 Intr +  83409  83612  204  1  0   67   26   221 0.607  12.05
 2.14 Intr +  85444  85716  273  2  0    3   77   380 0.682  24.99
 2.15 Intr +  86433  86513   81  1  0   41   93    76 0.753   2.09
 2.16 Term +  91430  91650  221  0  2  100   37   261 0.974  18.42
 2.17 PlyA +  92493  92498    6                               1.05

 3.00 Prom +  99666  99705   40                              -6.55
 3.01 Init + 103109 103123   15  1  0   51   80    39 0.276  -1.36
 3.02 Intr + 104697 104814  118  2  1   40  105   101 0.789   6.12
 3.03 Intr + 104856 105210  355  1  1   88   47   304 0.883  19.72
 3.04 Intr + 117988 118040   53  1  2   56   61    36 0.001  -4.67
 3.05 Term + 119133 119290  158  1  2   90   51   123 0.002   5.91
 3.06 PlyA + 121139 121144    6                               1.05

 4.00 Prom + 122191 122230   40                              -3.35
 4.01 Init + 133486 133546   61  0  1   88   62    78 0.966   6.66
 4.02 Term + 135560 135675  116  0  2  125   36    91 0.973   5.35
 4.03 PlyA + 136685 136690    6                               1.05

 5.05 PlyA - 136785 136780    6                               1.05
 5.04 Term - 159590 159077  514  1  1   54   48   227 0.147   8.13
 5.03 Intr - 160294 160155  140  1  2   43   92    73 0.162   1.54
 5.02 Intr - 164785 164536  250  0  1   82   61   142 0.403   7.42
 5.01 Init - 170174 170107   68  2  2   71   37    44 0.173  -1.80
 5.00 Prom - 173443 173404   40                              -6.05

 6.04 PlyA - 173903 173898    6                               1.05
 6.03 Term - 176231 176116  116  0  2  130   42    77 0.962   5.05
 6.02 Intr - 185000 184921   80  1  2   74   99    51 0.017   3.08
 6.01 Intr - 202715 202551  165  1  0   82  116    87 0.496   9.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100068  99998   71  1  2  117   45    91 0.885   4.82
S.002 Intr - 101354 101284   71  1  2   41  115    94 0.818   5.31
S.003 Init - 184996 184921   76  1  1   83   99    39 0.921   5.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_1|197_aa
MASWAALSTKALHFLEETVSDLSTVRFVAHQQHFQLLGVVDQELPETTGQHVLCFFVVPI
TNVGHQDLALEPSMNPVVSTSGFLPVRLNFDISVRLVPDELLGSLFEDLGLHKGSEGSHD
SEEEMTATSVIVFSYYTPLRCILQPERVNLPSFKLVVLGLDLGEGNPEAQHASKRAIKFQ
TVMQLELLTMASSARNP

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_1|594_bp
atggccagctgggcagctctttccaccaaggctttgcatttcttggaggaaactgtgagc
gatctcagcacagtaagatttgttgcacatcagcagcacttccagctccttggtgttgtg
gaccaggaacttccagaaaccactgggcagcatgtgctttgtttttttgttgttcccata
accaatgttgggcatcaagatctggcccttgaaccttctatgaaccctgttgtcagcacc
tctgggtttctgccagttaggcttaattttgacatatcggtcagactggtgccagatgaa
cttcttggttctctttttgaggatcttgggcttcataaggggtctgagggcagccatgat
tccgaggaggagatgactgccacctccgtaattgtgttttcgtactacactcccctgaga
tgcatcctccaacctgaaagagttaatttgccaagctttaaactggttgtcttaggattg
gacttaggggaagggaacccagaagcccaacatgccagcaaaagggccatcaaattccaa
acagtcatgcaactggagcttctgacaatggcctcttctgccaggaacccttaa

>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_2|687_aa
MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
IQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSTRGPEKEKGYATDESTVSSVQGSRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKDELSDWSLAGEDDRDSRHQRDSRRRPGGRGRSVSG
GRGRGGPRGGKSSISSVQYRSNIHNCSTLKRIFLASDMNIVLKDPDSNPYSLLDNTESDQ
TADTDASESHHSTNRRRRSRRRRTDEDAVLMDGMTESDTASVNENGLDDSEKKPQRRNRS
RRRRFRGQAEDRQPAIDFIYKEVEKVVSLWQAKDVIEEHGPSEKAINGPTSASGDDISKL
QRTPGEEKINTLKEENTQEAAVLNGVS

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_2|2064_bp
atggcggagctgacggtggaggttcgcggctctaacggggctttctacaagggatttatc
aaagatgttcatgaagactcccttacagttgtttttgaaaataattggcaaccagaacgc
caggttccatttaatgaagttagattaccaccaccacctgatataaaaaaagaaattagt
gaaggagatgaagtagaggtatattcaagagcaaatgaccaagagccatgtgggtggtgg
ttggctaaagttcggatgatgaaaggagaattttatgtcattgaatatgctgcttgtgac
gctacttacaatgaaatagtcacatttgaacgacttcggcctgtcaatcaaaataaaact
gtcaaaaaaaataccttctttaaatgcacagtggatgttcctgaggatttgagagaggcg
tgtgctaatgaaaatgcacataaagattttaagaaagcagtaggagcatgcagaattttt
taccatccagaaacaacacagctaatgatactgtctgccagtgaagcaactgtgaagaga
gtaaacatcttaagtgacatgcatttgcgaagtattcgtacgaagttgatgcttatgtcc
agaaatgaagaggccactaagcatttagaatgcacaaaacaacttgcagcagcttttcat
gaggaatttgttgtgagagaagatttaatgggcctggcaataggaacacatggtagtaac
atccagcaagctaggaaggttcctggagttaccgccattgagctagatgaagatactgga
acattcagaatctacggagagagtgctgatgctgtaaaaaaggctagaggtttcttggaa
tttgtggaggattttattcaggttcctaggaatctcgttggaaaagtaattggaaaaaat
ggcaaagttattcaagaaatagtggacaaatctggtgtggttcgagtgagaattgaaggg
gacaatgaaaataaattacccagagaagacggtatggttccatttgtatttgttggcact
aaagaaagcattggaaatgtgcaggttcttctagagtatcatattgcctatctaaaggaa
gtagaacagctaagaatggaacgcctacagattgatgaacagctgcgacagattggtatg
ggtttcagaccttcttccaccagagggcctgaaaaagagaaaggatatgccactgatgaa
agtaccgtctcttctgtacaaggttctaggtcttatagcggaagaggcagaggtcgtcgg
ggacctaattacacctccggttatggtacaaattctgagctgtctaacccctctgaaacg
gaatctgagcgtaaagacgagctgagtgattggtcattggcaggagaagatgatcgagac
agccgacatcagcgtgacagcaggagacgcccaggaggaagaggcagaagtgtttcaggg
ggtcgaggtcgtggtggaccacgtggtggcaaatcctccatcagttctgttcaatataga
tcaaacattcataattgcagtactcttaaacgaatatttcttgcctctgacatgaatata
gtgctcaaagatccagacagcaatccatacagcttacttgataatacagaatcagatcag
actgcagacactgatgccagcgaatctcatcacagtactaaccgtcgtaggcggtctcgt
agacgaaggactgatgaagatgctgttctgatggatggaatgactgaatctgatacagct
tcagttaatgaaaatgggctagatgatagtgaaaaaaaaccccagcgacgcaatcgtagc
cgcaggcgtcgcttcaggggtcaggcagaagatagacagccagctatagatttcatttat
aaagaagttgaaaaagttgtctccctttggcaggcaaaagatgtgattgaagagcatggt
ccttcagaaaaggcaataaacggcccaactagtgcttctggcgatgacatttctaagcta
cagcgtactccaggagaagaaaagattaataccttaaaagaagaaaacactcaagaagca
gcagtcctgaatggtgtttcataa

>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_3|232_aa
MLKVMEFQASNTCRARADKKLENRAERRCKNTNPQESEPTGLCPVALRSTTSTPHLRGGE
LRLRPGPEVAKKTGRPHSPWLRLGSLASTGSTAHPSSEAAANTCTPLPESDATPNLKHRR
PTQHGRSSRKLGRKTVVKGDAEEKESRSSSGQSGESDFGLVEGGWYRFFHSTFNAPFRSS
CLLEFAGGALQTLFACLSPTEAAEQQRLLSVTSSGSFIPEGHLPDASRSSPL

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_3|699_bp
atgctgaaggtgatggagttccaggcaagcaacacctgcagagcccgtgcggacaagaag
ctggagaaccgtgcagaaagacgatgtaaaaacacaaacccccaagagagcgagccaaca
gggttgtgtcctgtcgcactaaggagcacaacttcaactccacacctccgaggcggggag
ctgaggttgaggcctgggccggaggtcgccaagaagaccggaaggccgcactcaccatgg
ctccggctgggctcccttgcttccaccgggagcacggctcatcccagctcagaggccgcg
gccaacacctgcacgcctttaccagagagcgacgcaacccccaacctcaagcacaggcgc
cctacgcaacacggcaggagcagccgcaaactaggccggaaaactgtcgtaaaaggggac
gcggaggagaaggaaagtcgctcaagcagtggacagagcggagaaagcgacttcgggttg
gttgaaggtggctggtaccgatttttccattccacgtttaatgctcccttcaggagctct
tgtctgctggagtttgctggaggtgcactccagactctgtttgcctgcctatcaccaaca
gaggctgcagaacagcaaagattgctgtctgtaacttcctctggaagcttcatcccagag
gggcacctgccagatgccagccggagctctcctctatga

>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_4|58_aa
MGLHGDSTRVSGEAFSSLSPGLNARPSDCGNYLSLMFQKEKNSFLLDFLRYFSCDKQI

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_4|177_bp
atgggcttacatggagattccactcgtgtgagtggagaggctttttcttcactgagccct
ggtctaaatgctagacctagtgactgtggcaactatctctcactgatgttccagaaagag
aagaactccttcctgctagactttcttcgatatttcagttgtgataagcagatttaa

>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_5|323_aa
MCDLAYTSIGQDTEIWNKFQGSSLRKFPVIHAPIHTRQRPEESPVQMSGALLVAAPLSVN
SAPQILAAKVFLIYHFNARRPQGSASVFAPCAVETTSRKTIGVISQACLTRAPEGCTKHE
KEQPVPATAKTCQIVKTINFGKKLHQLMSKITRTLHPKSTEYTFFSAPHRTYSKIDYIVG
SKELLSKCKRTEIITNCLSNHSAIKLQLRIKKLTQNRSTTWKLNNLLLNDYLVHNEMKAE
IKMFFETNENKDITYQNLWDTFKAVCRGKFIALNAHRRKQERSKIDTLTSQLKELEKQEQ
THSKASRRQEIAKIKAELKEIET

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_5|972_bp
atgtgtgacctggcctacacaagcattggccaagatactgaaatctggaataaattccaa
gggtcaagcctcaggaagtttcctgtcatacatgcacctattcatactcgtcaaagacct
gaggagagccctgtgcaaatgtctggagctctcttagttgcagctcccctttctgtaaac
tctgccccgcaaattctagctgccaaggttttcctgatctatcacttcaatgcaagaaga
ccacaaggctcagcttcagtttttgctccctgcgctgtggaaactacctccaggaagaca
attggtgtcatcagccaggcttgccttacaagagctcccgaaggatgcactaaacatgaa
aaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaccatcaatttt
gggaagaaactgcatcaactaatgagcaaaataaccagaactctccaccccaaatcaaca
gaatatacattcttctcagcaccacatcgcacttattccaaaattgactacatagttgga
agtaaagaactcctcagcaaatgtaaaagaacagaaattataacaaactgtctttcaaac
cacagtgcaatcaaattacaactgaggattaagaaactcactcaaaaccgctcaactaca
tggaaactgaacaacctgctcctgaatgactacctggtacataatgaaatgaaggcagaa
ataaagatgttctttgaaaccaatgagaacaaagacataacataccagaatctctgggac
acatttaaagcagtgtgtagagggaaatttatagcattaaatgcccacaggagaaagcag
gaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaa
acacattcaaaagctagcagaaggcaagaaatagctaagatcaaagcagaactgaaggag
atagagacatga

>gi568815595r:180884643_181088230|GENSCAN_predicted_peptide_6|120_aa
XLTTPPSLYQILPWTALKLDQEAGARLPLVGKAPQIAFGSTVVSGKGTIKERKLERDMDE
ARSHHPQQINTGTENQTPHVLTREDELTVVLRKPEPRSKPLAITFPKRVKTRNENVNQTC

>gi568815595r:180884643_181088230|GENSCAN_predicted_CDS_6|363_bp
nngctgactacccctccatccctttatcaaatcttgccctggactgcattaaagttagat
caggaagcaggagctcgtctccccttggttgggaaagctccacaaatagcttttgggtct
acagtggtgagtgggaagggcactatcaaggaaaggaaattggaaagggacatggatgaa
gctagaagccatcatcctcagcaaataaacacaggaacagaaaaccaaacaccgcatgtt
ctcactcgggaggatgaactcacagttgttttgcgaaagccagaaccccgctccaagcct
ctagcaataactttcccaaaaagagtcaagacacgaaatgaaaatgtcaatcaaacatgt
tga