GENSCAN 1.0	Date run:  6-Nov-116	Time: 08:22:19

Sequence gi568815595f:58400945_58601629 : 200685 bp : 45.48% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2918   2966   49  2  1   90   98    39 0.264   3.78
 1.02 Intr +   7980   8057   78  2  0  113   99    39 0.258   7.25
 1.03 Intr +   9146   9215   70  1  1   85   93    54 0.217   4.35
 1.04 Term +  23808  24016  209  1  2  139   48   128 0.971  11.40
 1.05 PlyA +  24189  24194    6                               1.05

 2.11 PlyA -  24235  24230    6                               1.05
 2.10 Term -  27235  27090  146  2  2  104   29   115 0.933   5.27
 2.09 Intr -  27670  27529  142  1  1   65   63   114 0.978   6.53
 2.08 Intr -  28855  28764   92  2  2  115  105    -1 0.999   4.01
 2.07 Intr -  29294  29184  111  0  0   56  116    43 0.935   4.25
 2.06 Intr -  29998  29713  286  1  1   84   76   170 0.984  12.31
 2.05 Intr -  30684  30649   36  0  0   82   80    33 0.558   0.36
 2.04 Intr -  30849  30787   63  0  0   50   99    51 0.713   1.31
 2.03 Intr -  31040  30933  108  2  0   74   88   126 0.985  11.68
 2.02 Intr -  32740  32687   54  1  0  115   92    68 0.970   9.08
 2.01 Init -  32865  32824   42  0  0  104   80    40 0.704   4.61
 2.00 Prom -  36881  36842   40                              -1.66

 3.00 Prom +  38668  38707   40                              -6.06
 3.01 Init +  39198  39301  104  2  2   85  115    60 0.457   8.12
 3.02 Intr +  60274  60396  123  1  0   44  113    62 0.027   4.00
 3.03 Intr +  71373  71516  144  0  0   75   75    60 0.026   2.80
 3.04 Intr +  97769  97838   70  2  1   50  101    70 0.333   3.68
 3.05 Term + 100002 100688  687  2  0   73   39   497 0.739  36.91
 3.06 PlyA + 101121 101126    6                               1.05

 4.22 PlyA - 101429 101424    6                               1.05
 4.21 Term - 101831 101826    6  2  0   97   37     0 0.007  -6.33
 4.20 Intr - 108081 107949  133  2  1   88   68   156 0.803  14.25
 4.19 Intr - 116479 116262  218  1  2   58  117   212 0.953  18.40
 4.18 Intr - 121657 121552  106  0  1   89  105    22 0.982   4.22
 4.17 Intr - 123661 123482  180  0  0  131  121    60 0.996  12.58
 4.16 Intr - 125712 125522  191  0  2   99  110   194 0.998  21.08
 4.15 Intr - 128012 127850  163  1  1   98   67   141 0.969  12.98
 4.14 Intr - 128089 128049   41  1  2   52   72    19 0.562  -6.28
 4.13 Intr - 128744 128613  132  2  0   42  115    20 0.402   0.94
 4.12 Intr - 129694 129515  180  1  0  103    1   277 0.850  20.56
 4.11 Intr - 130422 130307  116  1  2   65   31   184 0.923  10.57
 4.10 Intr - 130868 130749  120  0  0   89  115    38 0.987   7.07
 4.09 Intr - 132608 132501  108  0  0   64   74   102 0.990   6.66
 4.08 Intr - 133201 133050  152  0  2   87   89   145 0.975  14.31
 4.07 Intr - 133578 133416  163  1  1  123   47   220 0.992  20.43
 4.06 Intr - 134253 134003  251  2  2   73   87   160 0.903  11.48
 4.05 Intr - 136288 136175  114  0  0   50   99    82 0.932   5.06
 4.04 Intr - 165751 165648  104  1  2  129    9   101 0.009   5.27
 4.03 Intr - 166420 166264  157  0  1   96   94   311 0.999  32.51
 4.02 Intr - 168921 168747  175  1  1   83   97   322 0.532  31.60
 4.01 Init - 178879 178831   49  1  1   76   96    49 0.758   5.76
 4.00 Prom - 179808 179769   40                              -3.06

 5.03 PlyA - 183344 183339    6                               1.05
 5.02 Term - 184079 183991   89  0  2   16   42   109 0.395  -3.08
 5.01 Init - 185992 185914   79  1  1   98  114   101 0.978  15.01
 5.00 Prom - 197843 197804   40                              -3.06


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  20872  20908   37  0  1   52  121    39 0.893   3.80
S.002 Term - 165751 165644  108  1  0  129   49   107 0.990   9.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:58400945_58601629|GENSCAN_predicted_peptide_1|135_aa
XLFSDVLLTTSEKPQFKIPTKLKEALRIAKECIEKRLIEEQKQKSKRSALENSEEHSAKY
SNSNNSGISALPPPPPPPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLSSIQNFQKGT
LRKAKTCDHSAPKIG

>gi568815595f:58400945_58601629|GENSCAN_predicted_CDS_1|408_bp
nnattattcagcgatgttttactaaccacttctgaaaaaccacagtttaagatccctaca
aagttaaaagaggcattgagaattgccaaagaatgtatagagaagagactaattgaggaa
cagaaacagaagtcaaaacgatctgctcttgaaaatagtgaagagcattcagcgaagtac
agcaactccaataattcagggatatctgcattacctccacctcctccacctccaccacca
ccagcagctcccttgcctcctgcgagcaccgaggcacctgcccagctctcgtctcaggct
gtgaatggcatgagccgaggggccttgctcagctccatccagaatttccaaaaaggaact
ttgaggaaagccaaaacctgtgatcacagtgctccgaagatcggctga

>gi568815595f:58400945_58601629|GENSCAN_predicted_peptide_2|359_aa
MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEV
AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI

>gi568815595f:58400945_58601629|GENSCAN_predicted_CDS_2|1080_bp
atggcggcggtgtctggcttggtgcggagaccccttcgggaggtctccgggctgctgaag
aggcgctttcactggaccgcgccggctgcgctgcaggtgacagttcgtgatgctataaat
cagggtatggatgaggagctggaaagagatgagaaggtatttctgcttggagaagaagtt
gcccagtatgatggggcatacaaggttagtcgagggctgtggaagaaatatggagacaag
aggattattgacactcccatatcagagatgggctttgctggaattgctgtaggtgcagct
atggctgggttgcggcccatttgtgaatttatgaccttcaatttctccatgcaagccatt
gaccaggttataaactcagctgccaagacctactacatgtctggtggccttcagcctgtg
cctatagtcttcagagggcccaatggtgcctcagcaggtgtagctgcccagcactcacag
tgctttgctgcctggtatgggcactgcccaggcttaaaggtggtcagtccctggaattca
gaggatgctaaaggacttattaaatcagccattcgggataacaatccagtggtggtgcta
gagaatgaattgatgtatggggttccttttgaatttcctccggaagctcagtcaaaagat
tttctgattcctattggaaaagccaaaatagaaaggcaaggaacacatataactgtggtt
tcccattcaagacctgtgggccactgcttagaagctgcagcagtgctatctaaagaagga
gttgaatgtgaggtgataaatatgcgtaccattagaccaatggacatggaaaccatagaa
gccagtgtcatgaagacaaatcatcttgtaactgtggaaggaggctggccacagtttgga
gtaggagctgaaatctgtgccaggatcatggaaggtcctgcgttcaatttcctggatgct
cctgctgttcgtgtcactggtgctgatgtccctatgccttatgcaaagattctagaggac
aactctatacctcaggtcaaagacatcatatttgcaataaagaaaacattaaatatttag

>gi568815595f:58400945_58601629|GENSCAN_predicted_peptide_3|375_aa
MGASLDQEHSGHPAGSRGVEVSSGSATVANSSGGRSIFCPNEVTLGGFLDGGRSPERPSH
DEKFGAFSSTPYPLGRLPDSGRYSQSQLPSELGEREKGKYKKTQPCGLTPYSMIQAHSQL
CVSSFPETWALEDASLEQMDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF
GGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLI
QCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTK
WNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTV
EHNWTFCRLARKTDD

>gi568815595f:58400945_58601629|GENSCAN_predicted_CDS_3|1128_bp
atgggtgcctcgctggatcaggagcacagcggacaccctgccggatccagaggggtggaa
gtcagcagcgggtctgcaacggtggcaaacagcagtggtggacggagcatcttttgtcct
aatgaggtgactcttggtgggttcctggatgggggccggtctccagaaagaccaagccat
gatgagaagtttggagcttttagctccactccctatcctctgggaaggcttccagactct
ggacggtattcccagagtcagctcccttctgaattgggagaaagagagaaaggaaaatac
aagaagacccaaccatgtggattaacaccctatagcatgatccaggcccacagccagctc
tgtgtttccagtttccctgaaacctgggctcttgaagacgcatcactggagcagatggat
aatggagactggggctatatgatgactgacccagtcacattaaatgtaggtggacacttg
tatacaacgtctctcaccacattgacgcgttacccggattccatgcttggagctatgttt
gggggggacttccccacagctcgagaccctcaaggcaattactttattgatcgagatgga
cctcttttccgatatgtcctcaacttcttaagaacttcagaattgaccttaccgttggat
tttaaggaatttgatctgcttcggaaagaagcagatttttaccagattgagcccttgatt
cagtgtctcaatgatcctaagcctttgtatcccatggatacttttgaagaagttgtggag
ctgtctagtactcggaagctttctaagtactccaacccagtggctgtcatcataacgcaa
ctaaccatcaccactaaggtccattccttactagaaggcatctcaaattattttaccaag
tggaataagcacatgatggacaccagagactgccaggtttcctttacttttggaccctgt
gattatcaccaggaagtttctcttagggtccacctgatggaatacattacaaaacaaggt
ttcacgatccgcaacacccgggtgcatcacatgagtgagcgggccaatgaaaacacagtg
gagcacaactggactttctgtaggctagcccggaagacagacgactga

>gi568815595f:58400945_58601629|GENSCAN_predicted_peptide_4|952_aa
MTPNIRGLLPSSPWLSAAMYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASR
SHQELHRELLMNHRRGLGVDSKPELQRVLEHRRRNQLIKKKKEELEAKRLQCPFEQELLR
RQQRLNQLEKPPEKEEDHAPEFIKVRENLRRIATLTSEERELPYVGGEKGRTTSLPEAAA
YSRGEASPAYSADTGQRGARFFALTNAESRPSEQPGWKCLSIVTRQIQDRMGSPVHRVSL
GDTWSRQMHPDIESERYMQSFDVERLTNILDGGAQNTALRRKVESIIHSYPEFSCKDNYF
MTQNERYKAAMRRAFHIRLIARRLGWLEDGRELGYAYRALSGDVALNIHRVFVRALRSLG
SEEQIAKWDPLCKNIQIIATYAQTELGHGTYLQGLETEATYDAATQEFVIHSPTLTATKW
WPGDLGRSATHALVQAQLICSGARRGMHAFIVPIRSLQDHTPLPGIIIGDIGPKMDFDQT
DNGFLQLNHVRVPRENMLSRFAQVLPDGTYVKLGTAQSNYLPMVVVRVELLSGEILPILQ
KACVIAMRYSVIRRQSRLRPRQGNLGCKSSLEDRATGKKGLLLLSCPRPIYLGCRSVPRV
VIRKMRQVFMVSGIGEGGHNSDPEAKVLDYQTQQQKLFPQLAISYAFHFLAVSLLEFFQH
SYTAILNQDFSFLPELHALSTGMKAMMSEFCTQGAEMCRRACGGHGYSKLSGLPSLVTKL
SASCTYEGENTVLYLQVARFLVKSYLQTQMSPGSTPQRSLSPSVAYLTAPDLARCPAQRA
ADFLCPELYTTAWAHVAVRLIKDSVQHLQTLTQSGADQHEAWNQTTVIHLQAAKVHCYYV
TVKGFTEALEKLENEPAIQQVLKRLCDLHAIHGILTNSGDFLHDAFLSGAQVDMARTAYL
DLLRLIRKDAILLTDAFDFTDQCLNSALGCYDGNVYERLFQWAQKSPTNTQK

>gi568815595f:58400945_58601629|GENSCAN_predicted_CDS_4|2859_bp
atgacgcccaacatccgaggactactgcccagttctccttggctgtcagccgccatgtac
tcggagatccagagggagcgggcagacattgggggcctgatggcccggccagaatacaga
gagtggaatccggagctcatcaagcccaagaagctgctgaaccccgtgaaggcctctcgg
agtcaccaggagctccaccgggagctgctcatgaaccacagaaggggccttggtgtggac
agcaagccagagctgcagcgtgtcctagagcaccgccggcggaaccagctcatcaagaag
aagaaggaggagctggaagccaagcggctgcagtgcccctttgagcaggagctgctgaga
cggcagcagaggctgaaccagctggaaaaaccaccagagaaggaagaggatcacgccccc
gagtttattaaagtcagggaaaacctgcggagaattgccacactgaccagcgaagagaga
gagctcccctatgtgggaggagagaagggcaggaccacaagcctgccagaggctgcggcc
tacagccggggagaggccagcccggcctacagtgcggacacaggacagaggggagccagg
ttctttgcactgaccaatgctgagagcagaccctcggagcagccgggttggaagtgtctc
tccatagtcaccagacagatccaggataggatgggcagcccagtgcaccgagtgtcattg
ggggatacctggagcaggcaaatgcaccccgacatagagagcgagaggtatatgcagtcc
tttgacgtggaacggctcaccaacatccttgatggaggtgcccagaacactgcactccgc
aggaaagttgagagcatcatccacagttacccggagtttagctgtaaggacaattatttc
atgacccagaatgagcgttataaggctgccatgcggagggcattccacatccggttgata
gctcggcgcctgggttggttagaagatggtcgtgaattaggctacgcttacagagccctt
tctggagacgtggccttaaatatacacagagtcttcgtgagagccctcaggagcctgggc
tcagaggagcagattgccaaatgggacccactctgcaaaaacatccagatcatcgcaacg
tatgcacagacagagttgggacatgggacatatcttcagggcctggagactgaagccacc
tatgacgcagccacccaggagtttgtgatacacagccccacgctgactgccaccaaatgg
tggcctggagacttgggacggtcagccacccatgccctggtccaggcccagctgatctgc
tcaggagccaggcggggcatgcacgcttttattgtgccaatccggagtcttcaggaccac
accccactgccaggaatcatcattggggacatcggacccaagatggactttgatcaaaca
gacaatggcttcctgcagctgaaccatgtgcgggtccccagggagaacatgctgagtcgc
tttgcacaggtcttgccagatggcacctacgtcaaactcggtacagcacagagcaactac
cttcccatggtggtggtgcgggtggagctgctgtcaggggagatcctccctatactgcag
aaggcctgtgtcatcgccatgcgctactcggtcatccgccgccaatcccggctccggccc
aggcaagggaatctgggctgcaagagttctctggaggacagggccactgggaagaagggg
cttctgctgctgtcctgcccgaggcccatttatctgggctgcagaagtgtccccagggtg
gttataagaaagatgcgccaggtttttatggtgtcggggataggggaaggtggacacaac
agtgacccagaggcaaaggtcctggactaccagacacaacagcagaaactctttcctcag
ctggccatcagttatgccttccatttcctggcagtcagcctcttggagttcttccagcac
tcctacactgccattctgaaccaagacttcagcttcctgcctgagctccacgcactgagc
acgggcatgaaggccatgatgtcagaattctgcacccagggagctgagatgtgccgcagg
gcctgtggcggacatggctactcaaagctgagtggcctgccatcactggtcaccaaattg
tcggcctcctgtacctacgagggtgagaacacagtgctctacctgcaggtggccaggttc
ctggtgaagagctacctgcagactcagatgtcccctggctccacgccacagagatctctc
tctccatctgtcgcatatctcaccgcacctgacctggccaggtgtccagcccagagggca
gccgacttcctctgcccggagctctacaccacggcctgggcacatgtggcagtaaggctc
ataaaggactcagtgcagcatttacagaccctgacgcaatccggagctgaccagcacgag
gcttggaaccagaccactgtcatacacctccaggctgctaaggtgcactgctactatgtc
actgtgaagggttttacagaagctctggagaaactagaaaatgaaccagcgattcagcag
gtgctcaagcgcctctgtgacctccatgccatacatggaatcttgactaactcgggtgac
tttctccatgacgccttcctgtctggtgcccaagtggacatggcaagaacagcctacctg
gacctgctccgcctgatccggaaggatgccatcctgttaactgatgcttttgacttcacc
gatcagtgtttaaattcagcacttggctgttatgatggaaacgtctacgaacgcctgttc
cagtgggctcagaagtcaccaaccaatactcagaaataa

>gi568815595f:58400945_58601629|GENSCAN_predicted_peptide_5|55_aa
MAQRLGEWARGPSDATGLYRAVLLRSVLPIDGVQVLGVMNKELDKTHKQSKERMK

>gi568815595f:58400945_58601629|GENSCAN_predicted_CDS_5|168_bp
atggcgcagaggctgggcgagtgggcccgggggccctccgatgccaccgggctctaccgg
gctgtgctgctccggtcggtgttacccattgacggtgtccaggttcttggcgtcatgaac
aaagaattggacaaaacgcacaaacaaagcaaggaaagaatgaagtaa