GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:33:46

Sequence gi568815595f:40661545_40861796 : 200252 bp : 40.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8571   8730  160  2  1   81   87    61 0.463   5.34
 1.02 Intr +  30232  30356  125  2  2   84   72    80 0.026   5.38
 1.03 Term +  34795  34905  111  0  0   80   48    79 0.033   0.68
 1.04 PlyA +  35979  35984    6                               1.05

 2.10 PlyA -  36237  36232    6                               1.05
 2.09 Term -  37855  37522  334  0  1  -89   48   535 0.327  24.90
 2.08 Intr -  38473  38372  102  0  0   35   77   128 0.389   4.77
 2.07 Intr -  39882  39736  147  2  0   51   41   114 0.289   1.43
 2.06 Intr -  40672  40507  166  2  1   35   84    99 0.117   2.30
 2.05 Intr -  43894  43861   34  1  1  101   83    50 0.086   2.68
 2.04 Intr -  49103  48899  205  1  1   68  110   131 0.950  11.58
 2.03 Intr -  59426  59208  219  1  0   70   82    73 0.044   1.40
 2.02 Intr -  61753  61690   64  2  1  126   77     5 0.074   0.06
 2.01 Init -  65102  64988  115  2  1   68  110    39 0.722   4.53
 2.00 Prom -  66172  66133   40                              -5.95

 3.03 PlyA -  66858  66853    6                               1.05
 3.02 Term -  71102  70912  191  0  2   37   43   225 0.539   9.53
 3.01 Init -  77122  77041   82  1  1   71   76    51 0.374   3.38
 3.00 Prom -  81492  81453   40                              -4.25

 4.07 PlyA -  81622  81617    6                               1.05
 4.06 Term -  84663  84477  187  2  1   16   38   185 0.201   2.28
 4.05 Intr -  93865  93673  193  2  1   48   60   140 0.182   4.83
 4.04 Intr -  95710  95495  216  2  0   82   -3   182 0.104   6.05
 4.03 Intr -  97526  97375  152  1  2   73   86    32 0.018   0.39
 4.02 Intr - 108934 108782  153  0  0   38   63   153 0.140   6.07
 4.01 Init - 115530 115307  224  0  2   65   63   139 0.106   6.63
 4.00 Prom - 118192 118153   40                              -7.55

 5.00 Prom + 120203 120242   40                              -6.75
 5.01 Init + 120932 121024   93  1  0   71    3   224 0.311  12.63
 5.02 Intr + 125303 125636  334  1  1   76   45   269 0.053  15.62
 5.03 Intr + 139952 140063  112  0  1   95   67    22 0.001  -0.68
 5.04 Intr + 140126 140256  131  2  2   77   34    78 0.003   0.72
 5.05 Term + 156920 157074  155  0  2  112   40   165 0.819  11.20
 5.06 PlyA + 157079 157084    6                               1.05

 6.04 PlyA - 158340 158335    6                               1.05
 6.03 Term - 166390 166301   90  1  0   70   43   110 0.100   1.44
 6.02 Intr - 168411 168291  121  2  1   95   58    51 0.050   2.38
 6.01 Init - 193731 193604  128  0  2   82   55    94 0.173   5.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  48579  48511   69  0  0   87   55    78 0.854   1.36
S.002 Sngl - 119209 118817  393  1  0   60   32   254 0.855  13.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_1|131_aa
MWGHSGGMFSAASKEHQQIPSWVALLPTLTLVTPGHKPTPPGEGSPCAPCWVHSVMGTVA
PMQRSCSPRTGEASLQIREAERLPDSFSFENCFQRASSIYLPNYLHQILADKITSVASVS
RTKQWLIQQLL

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_1|396_bp
atgtggggccactctgggggaatgttttctgctgctagcaaggaacaccagcaaatccca
tcttgggtggctctgctccctacactcacacttgtcactcccggtcataaacccactcct
cctggggaaggttcaccatgtgctccctgctgggttcattctgtcatgggaactgttgct
cccatgcagagaagctgctcaccaaggactggagaggccagcctgcagatcagagaagca
gagagacttccagacagtttctcatttgaaaattgtttccagagggcttccagcatctac
ctacccaattacctacatcaaatccttgctgataagataactagtgttgcttctgtttcc
cggactaaacaatggttaatacaacaactactgtaa

>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_2|461_aa
MDVSSSRILLYLQIPLRAPLYKQERELPSVPLIPGGWTDGAGLCNSAVILLYASTQTVFM
DDPYASIEACKLGHQGSNSLLVHTHTSSLFPRVETGHKLAPLVPRQVWFQALMQTANHCL
HFSISATSLAAHRTQKTSQCPLPKAAVSFSLQMRDNHLLDGAMRHQFHHGTSSGVWTPPF
IFLSMEEPVATSIQIKGPINQVFEKQVVFRYIKCTTPTVNPNENYGLWEIIRCKGRFINC
NKCTTVVQDVESGGGCACVGTEVYGNALLLSMSVEVQRALIWSPTGLGSHILMALLGVAH
VAAHMGWSFVPEAFPGSPGAWTVQGQGTTSGENLAGEDSLKSPGAVQGISCKCVAASHAQ
RLCPTTIVNNTVPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPKKAPAKKG
EKIPKGKKGKADAGEEGNNPAENGDAKTDQAQKAEGAGGAK

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_2|1386_bp
atggatgtcagcagcagcaggatactcctgtaccttcaaattccccttagagctccccta
tacaagcaggaaagggagcttccgtcagtgcctttaattccagggggctggacagatggg
gcagggctgtgcaattcagcagtcattcttttatatgcatcaacacaaactgtgttcatg
gatgatccctatgcaagtatagaggcttgcaagcttgggcaccaaggtagtaactctctt
ttagtccacacgcacacctccagtctcttccccagggtggaaacaggccacaagctggcc
ccattagtgcccaggcaggtctggttccaggccctcatgcagactgcgaaccactgtctc
cacttctccatctccgccacctctctggctgcccatagaacacaaaagacatctcagtgt
ccattgcctaaggcagcagttagcttcagccttcagatgagggacaaccatctccttgac
ggagccatgaggcatcaattccatcatggaacttcttcaggggtttggactcctcccttt
atctttctttctatggaggagccagttgctaccagtattcagattaaaggacccatcaat
caggtttttgagaaacaggtggtgtttcgttacattaaatgtacaacaccaacagtgaat
cctaatgaaaactatggactttgggagataataaggtgtaagggtagattcatcaactgt
aacaaatgtaccactgtggtgcaggatgttgagagtgggggaggctgtgcatgtgtgggg
acagaagtatatgggaacgctcttctcttatctatgagtgtggaagtccagagggccctg
atatggtcccccacaggccttggcagccacatcctcatggctttactgggtgtagcccat
gtggctgctcatatgggttggagttttgtgcctgaagctttcccaggcagccctggagcc
tggacagttcaaggtcaagggacaacaagtggtgaaaaccttgctggtgaggactctctg
aagagtcctggggctgtgcagggcatctcatgcaagtgtgttgctgcatcccacgcccag
cgcttatgtcccaccaccatcgtcaacaacaccgtgcccaagagaaaggctgaaggggat
gctaaaggagataaagccaaggtgaaggatgaaccacagagaagatccatgaggttttct
gctaaacctgctcctccaaagccagagcccaagcctaaaaaggcccctgcaaagaaggga
gagaagatacccaaagggaaaaagggaaaagctgatgctggcgaggaggggaataaccct
gcagaaaacggagatgccaaaacagaccaggcacagaaagctgaaggtgctggaggtgcc
aagtga

>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_3|90_aa
MQRASEINCLGSDYTHVTNSPTPPLSPGTTRYQENKELTDPLKAAAGLCKFQKTGEKLSS
QSVRGENLPPNTSPLGNAKVQIMEEGFNLT

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_3|273_bp
atgcagagagccagtgaaataaactgcttgggctcagattatacccatgtcaccaactca
ccaacacctcctttgtctccaggaaccaccaggtaccaggaaaacaaagaattaacagat
cctttgaaagcagcagcaggcctctgcaaattccagaagacaggtgaaaaactgagttct
caaagtgtgaggggagaaaacctgcctccaaacacatccccactggggaacgcaaaagtc
cagattatggaggaaggatttaaccttacctag

>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_4|374_aa
MHFVIWKALALSLARVAAISVGQKQNLEEVAMPRKHGSAQDRLRCPAGGKDEGAHYAEKD
PLEVGVVTRRNPSDQTSCGYKEKETSDVFGALGTIQLPAEAGEQGFEGKLFIQEMISEST
SQKLGKLPVHSDGSFFCCAELQTTAQGNKRGYKQMEEHSMLMGRKNQYHENGHTAQGLKK
MIRAAEVLQDKLENVGLGNVTIPGSEFITKLIGVPEKASQMDMCDPVPHFTTESSLGHER
FHPKAPAIGQSPRGGPDLFLNIVKETPTALSVCTGSFLQSEAGQGQCLLAVNRVPLAVLV
QRVEFPSPGNPEGYFCGQESLQVERGAGAQDKKAPGYKQGIRNHQLKLQLTSRVAEVIQH
QSWQHLLSRTNFLE

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_4|1125_bp
atgcattttgtcatatggaaggctctagcactttctctggctagggtggcagctatcagt
gtagggcaaaagcaaaacctggaagaggtggccatgcccagaaagcatggcagtgcacag
gacaggctgcggtgcccagcaggagggaaggatgaaggtgcccactatgcagagaaggac
ccactggaagtgggagtggtgaccaggagaaaccccagtgaccagaccagctgtggctat
aaagaaaaagaaacctcagatgtgtttggagctcttggtactattcagcttcctgcagaa
gcaggggaacaaggatttgagggcaagttgtttattcaggaaatgatctcagaaagcacc
agtcaaaaactagggaagttgcctgttcactctgatggtagtttcttttgctgtgcagaa
ctacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccatg
ctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtctcaagaag
atgatcagggcagcagaagtccttcaagacaaactggaaaatgtggggcttgggaatgtt
acgataccaggttcagagttcatcaccaaactcattggtgtcccagagaaagcaagtcag
atggacatgtgtgacccagttccccattttacaactgagagcagtctagggcatgaaagg
tttcacccaaaggccccagctattgggcagtcacccaggggtggacctgacctcttcctc
aacattgtcaaggaaacaccaacagccttgtcagtgtgcacaggatccttcctgcagtca
gaggcaggacagggacagtgtctccttgctgtgaacagagtccctctagctgtcttggta
cagagggtagagtttcccagccctggcaatcctgagggttacttctgtggccaagaaagc
cttcaggtggagagaggtgcaggggctcaagataagaaggcaccagggtacaaacagggt
atcaggaaccatcaactgaagctacagttgacctccagggtggcagaagtgatacagcat
cagagttggcagcacctgctgtcacgaacaaacttcctggaataa

>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_5|274_aa
MRNPLPLLAPSFDDDDNDDDDDDDGDDDNLCGMDWYWFVAWGLGTPGLGYQVEEIAKQQR
IQDVIWLLLMAYNQIQEQINELNLELKVKREEEYKNLENLQTGHVIEKEKSFSGEEFKQS
VEQPLAGEISVTKMEPSANIQGIPVLCPSVADLHRPHLSGSQILCLQTVLSHWVWAEEGS
SGSVQQWMCSSSTAAPLGRPSGMAMTLTGSSDIFPSLFSFRFTGRDCESQTLTTHETLMV
ADDGGDEIYNGNEVTNSERCNHQRNTTGCTENRK

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_5|825_bp
atgaggaaccctctcccacttcttgctccttcctttgatgatgatgataatgatgatgat
gatgatgatgatggtgatgatgacaacctctgtggcatggactggtactggtttgtggcc
tgggggttggggacccctggcctagggtatcaggttgaagaaattgccaaacagcaaagg
attcaagatgtgatctggctgcttctaatggcctacaatcagatacaggagcaaataaat
gagttaaatttggaacttaaagttaaaagagaagaagaatataaaaatttggaaaatttg
cagactggccatgtgatagagaaggaaaaatcattttcaggagaggaattcaagcagtct
gtggagcaaccacttgctggagagatcagtgtaactaaaatggaaccaagtgctaatatc
caaggcattcctgttttgtgtccttctgtggctgacctccacagaccacatctttcaggc
tctcagatcctctgtcttcagactgtgctcagccattgggtatgggcagaggaaggaagc
agtggcagtgttcagcagtggatgtgttcctcctcaactgcagctcctctaggcagacct
tccggcatggctatgactctcacaggctccagtgatatttttccctcccttttttccttc
aggtttacgggcagagactgtgaatcccagacactaactacacatgaaacattgatggtt
gctgatgatggtggtgatgaaatttataatggaaatgaggtaaccaattccgagaggtgt
aaccaccagagaaacaccactggctgtacagagaacagaaaataa

>gi568815595f:40661545_40861796|GENSCAN_predicted_peptide_6|112_aa
MREKQYVMILKASAPHLYPVHSAHIPLAKASITARSRVNRMEKEKDNYVCGPSSMSVFLI
IFFKFAAPYYRKKNYMHCLNFPQTPDSFCSDPTPTEAVTQESSMSNAELESV

>gi568815595f:40661545_40861796|GENSCAN_predicted_CDS_6|339_bp
atgagggagaaacagtacgtgatgattcttaaggcttcagccccgcatttataccctgtc
cactctgctcacattccattggccaaggcaagtatcacagccaggtccagagtaaatcgg
atggagaaagagaaagataactatgtttgtggcccatcatctatgtctgtgtttcttatc
atttttttcaaatttgcagcaccatactatcggaagaagaactacatgcattgcctcaat
ttcccccagactcctgatagtttctgctcagatccaacaccaaccgaagcagtgacccag
gagtcttcaatgagcaatgcagaactggaaagcgtctaa