GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:38:28

Sequence gi568815595f:179469822_179688007 : 218186 bp : 41.34% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +    386    589  204  1  0   63   47   178 0.974   7.59
 1.02 PlyA +   2017   2022    6                               1.05

 2.09 PlyA -   2259   2254    6                               1.05
 2.08 Term -  21878  21662  217  1  1  106   38   143 0.859   6.73
 2.07 Intr -  22711  22510  202  2  1   48   23   201 0.526   7.02
 2.06 Intr -  35445  35284  162  1  0  108   71    50 0.227   4.33
 2.05 Intr -  38678  38523  156  0  0   71   54   113 0.125   5.26
 2.04 Intr -  52996  52621  376  1  1   80   30   199 0.042   6.96
 2.03 Intr -  71900  71819   82  1  1   69   52   100 0.011   3.22
 2.02 Intr -  77145  76749  397  1  1   77   39   200 0.053   6.71
 2.01 Init -  77201  77186   16  2  1   95   68    15 0.591   0.68
 2.00 Prom -  88601  88562   40                              -6.65

 3.00 Prom +  88687  88726   40                              -5.25
 3.01 Init +  93272  93296   25  1  1   97  105    57 0.293   8.06
 3.02 Intr + 100003 100079   77  2  2   89  115    89 0.945  10.02
 3.03 Intr + 100246 100420  175  0  1   84   51   151 0.996   9.59
 3.04 Intr + 105582 105648   67  1  1   80   15    97 0.716  -1.36
 3.05 Intr + 106396 106490   95  1  2   72   94   112 0.721   8.89
 3.06 Intr + 106799 106905  107  0  2  100  106    34 0.983   5.41
 3.07 Intr + 110819 110880   62  1  2   91   45    79 0.616   0.51
 3.08 Intr + 111073 111187  115  1  1   59   70   121 0.992   6.93
 3.09 Intr + 111319 111399   81  0  0  103  100    48 0.957   6.42
 3.10 Intr + 113532 113627   96  2  0   87  100    33 0.856   3.69
 3.11 Intr + 120660 120772  113  2  2   22  100   120 0.183   4.86
 3.12 Term + 121429 121501   73  1  1   53   42    69 0.150  -4.80
 3.13 PlyA + 121961 121966    6                               1.05

 4.07 PlyA - 122804 122799    6                               1.05
 4.06 Term - 124074 123910  165  0  0  112   54   134 0.597   9.33
 4.05 Intr - 128950 128854   97  0  1   54  116    92 0.108   7.69
 4.04 Intr - 134849 134706  144  1  0  -41  110   159 0.054   3.68
 4.03 Intr - 135130 134900  231  0  0   93   50   199 0.092  12.57
 4.02 Intr - 136393 136265  129  0  0   72   61    69 0.077   1.49
 4.01 Init - 143284 143217   68  1  2   99  115   -32 0.068   1.20
 4.00 Prom - 144232 144193   40                              -7.25

 5.00 Prom + 144381 144420   40                              -2.25
 5.01 Init + 148660 148700   41  0  2   85   70    96 0.325   7.21
 5.02 Term + 154099 154219  121  1  1   86   47   159 0.994   8.57
 5.03 PlyA + 154263 154268    6                               1.05

 6.03 PlyA - 154481 154476    6                               1.05
 6.02 Term - 171041 170922  120  2  0  108   31    72 0.707   0.99
 6.01 Init - 171759 171700   60  0  0   39   81    56 0.597   1.30
 6.00 Prom - 178384 178345   40                              -2.25

 7.03 PlyA - 179017 179012    6                               1.05
 7.02 Term - 179922 179641  282  0  0   50   48   286 0.954  15.24
 7.01 Init - 180956 180924   33  2  0   84   93    15 0.976   1.54
 7.00 Prom - 181443 181404   40                             -13.49

 8.00 Prom + 181637 181676   40                              -7.35
 8.01 Init + 183405 183572  168  2  0   86  105   218 0.986  20.88
 8.02 Intr + 183686 183929  244  1  1   65   77   130 0.938   5.75
 8.03 Intr + 188514 188635  122  1  2  102   87    10 0.227   1.59
 8.04 Intr + 212057 212182  126  1  0  123   78    62 0.010   8.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 128925 128854   72  0  0   70  116    90 0.889  11.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_1|67_aa
SILLQLIKRKKLTVKQPQPGLSGGIPEESMVIIGSDSSLCVIAPEAFQYRWQDVEEGDSD
IDDPNPV

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_1|204_bp
agtatactcctacaacttataaaaagaaaaaagttaactgtaaaacagccccagccaggt
ctttcaggaggtattccagaagaaagcatggttatcataggaagtgacagctccttgtgt
gttattgcccctgaagccttccagtatagatggcaagatgtggaggagggagacagtgat
attgatgaccccaaccctgtgtag

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_2|535_aa
MGLNQGPRSLQSADGKASQACVHPLRAASSPGPWAGPEMLSRSQGLEPEILELYLVLYCT
AAELVQKPQDKVLPILPSPFPRWRNFSPCPPPPQAHRKYFQGVADIHLRPKSSSVSLWWM
LPGMGLTAVDSGLSSGPELSFTFCHEWKQPDTLTRSQAVAGAMLFAGPYIIPDTTPDPHD
CISLIHLTFTPFPHISFFSVPHPDHTWFIDGNSTRPNRHSPAKAGYAIVSSTSIIEAIAL
PRSTISQQAELIALTQALTLAKGVRVNIYTDCKYAFFHSRPCEETTKQALFSFRKCKQIA
IYFNPISILYSACEAERSWEPHAAPAAASPVRGLLCPCVIHGALNQIYVWSFAMRGSAFL
YLFYIFLQLLCLLMPYWYRPVTGAGSFSPRLLLFTAGYVTQWQLRSQGGTRAARALGKRH
SSSMTLGVVEHTGKSGTGTRVWHAAQQQLQPHGWCSITVAQILGLKHVWDGYNSILDQED
KGPNLEMVEEKASVSLGSRGWYGLYTSSGMLPYGLLQERKITVTNFCVFVIPGTT

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_2|1608_bp
atgggcctcaaccaaggccccaggtctctgcaatcagcagatggcaaagccagccaggct
tgtgtccatcccttaagggcagcaagttcccctgggccctgggcaggtccagagatgttg
tccaggagccagggcctagagccagaaatcttagaactctacctggtgctctattgtact
gcagctgagctggtacagaaaccacaagacaaagtccttcctattcttccctcccctttc
cccaggtggaggaatttctccccatgtccaccaccaccacaggcccacaggaagtacttc
cagggtgtagctgatattcacttaaggcccaagagctcttcagttagcttgtggtggatg
ctgccaggcatgggactcaccgctgtggacagtgggctgtcctctggcccagaactctcc
ttcaccttctgccatgagtggaagcagcctgataccctcaccagaagccaagcagttgct
ggtgccatgctttttgctggcccctacattattcctgataccacacctgacccccatgac
tgtatctctctgatccacctgacattcactccatttccccatatttccttcttttctgtt
cctcaccctgatcacacttggtttattgatggcaattccaccaggcctaatcgccactca
ccagcaaaggcaggctatgctatagtatcttccacatctattattgaggctattgctctt
ccccgctccactatctctcagcaagccgaactcattgccttaactcaggccctcactctt
gcaaaaggagtacgtgtcaatatttatactgactgtaaatatgccttctttcactcgcgt
ccgtgcgaagagaccaccaaacaggctttgttttcttttcgcaaatgtaagcagatagct
atctattttaaccctatcagcatcttgtacagcgcttgcgaggctgagagatcatgggag
cctcatgctgccccagctgctgcctctccagtgaggggtctgctgtgcccatgtgtcatc
catggtgctctcaatcagatctacgtttggagctttgcgatgagagggtctgctttcctc
tacttgttctacatcttcctccagttgctctgtttactgatgccgtattggtataggcct
gtaacaggtgctggctccttctctcctagactgttgctgttcactgcagggtatgtgaca
cagtggcaactcaggtctcaaggaggtaccagggctgctcgggccctggggaaacggcac
agcagcagcatgactctgggggtggtggagcatactggcaagtctggcactggcactagg
gtttggcatgcagcacagcagcagctccagcctcatgggtggtgtagtatcacagtagct
cagatcttgggcttgaaacatgtctgggatggctacaactccattttggaccaggaagac
aagggacctaacttagaaatggtggaggagaaagcttcagtcagcttggggtccagagga
tggtatggcctctataccagctccggaatgcttccatatggacttttacaagaaagaaaa
ataactgtcactaatttttgtgtctttgtcattcctgggacaacctaa

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_3|361_aa
MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDK
GKQGGPTYYIDTNALRVPRENMEAISPLKNGMALFIIYFTKQDNLQGKGSFGAPLFANGR
STGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELVPPYMIA
SKCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNV
KGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPP
VLNVNSKDLKAVATEEATVENKQGTLRKQGKSSDFDESTFSQEPFGSSALSLSGATAMGV
G

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_3|1086_bp
atgagcggcggcgtgtacgggggagatgaagttggagcccttgtttttgacattggatcc
tatactgtgagagctggttatgctggtgaggactgccccaaggtggattttcctacagct
attggtatggtggtagaaagagatgacggaagcacattaatggaaatagatggcgataaa
ggcaaacaaggcggtcccacctactacatagatactaatgctctgcgtgttccgagggag
aatatggaggccatttcacctctaaaaaatgggatggctttattcatcatctacttcact
aaacaggataaccttcagggaaaaggcagttttggtgcaccattatttgctaatggtcgt
tctactgggctgattttggacagtggagccactcataccactgcaattccagtccacgat
ggctatgtccttcaacaaggcattgtgaaatcccctcttgctggagactttattactatg
cagtgcagagaactcttccaagaaatgaatattgaattggttcctccatatatgattgca
tcaaaatgtgttatccaggattttcaagcttcggtacttcaagtgtcagattcaacttat
gatgaacaagtggctgcacagatgccaactgttcattatgaattccccaatggctacaat
tgtgattttggtgcagagcggctaaagattccagaaggattatttgacccttccaatgta
aaggggttatcaggaaacacaatgttaggagtcagtcatgttgtcaccacaagtgttggg
atgtgtgatattgacatcagaccaggtctctatggcagtgtaatagtggcaggaggaaac
acactaatacagagttttactgacaggttgaatagagagctgtctcagaaaactcctcca
gtcttaaatgtgaatagcaaagatttaaaagctgtagcaacagaagaagcaacagtggaa
aataagcaaggaacacttaggaaacaaggcaagagttctgacttcgatgaaagcaccttt
agccaggagcccttcggttcctctgccctgtctctctctggagccacagcaatgggagtt
ggatag

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_4|277_aa
MGSQKSLYTHYKRLNLKGFNIIRVSEIIKYTEYQAFDLCYDYSHRHDATHCLQGGPNSPI
KTVLVRPAPTSSLRKATSEEAPKSEASAKGPARQSCHRSNRNPPQQTHGRHGYYGQEEEG
RRVTEAERANLPMRTKAGCGHLNDAIVGGNAFCQLCENMAAAGLALLCRRVSSALKSSRS
LITPQVPACTGYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDALDKVVQERED
ALRLLQTGQERARPGAWRRDIFGRIIWYVVNTVALLR

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_4|834_bp
atggggtcccaaaagagtctttacacacattacaaaaggctaaatctaaaaggattcaac
ataataagagtctctgagataataaagtacactgaatatcaagcatttgatctttgctat
gattattcacaccgccatgatgcaactcactgtctccaaggaggtccaaatagccctatt
aagactgtattggtcaggccagcacccaccagcagccttcggaaagccacgagtgaggaa
gcccccaaatccgaggcgagtgccaaggggccggccagacagagctgccaccgcagtaac
cgaaacccgccgcaacaaactcatggccgccatggctactacgggcaggaggaagaaggg
aggcgggtcacggaagctgagagagccaatttaccaatgaggacaaaggcaggatgtggc
catcttaatgacgctatcgttggcggaaacgcgttttgccagttatgcgaaaacatggct
gcggccggtttggcccttctttgtaggagagtttcatccgccctgaaatcttcccgatcg
ttaataactcctcaggtccctgcctgcacagggtatgtcttactgaaagaaagaaacatg
cttctaaccctagagcaggaggccaagcggcagagattgccaatgccaagtccagagcgg
ttagataaggtagtagattccatggatgcattagataaagttgtccaggaaagagaagat
gccctaaggcttcttcagactggtcaagaaagagctagacctggtgcttggagaagagac
atctttggaagaatcatctggtatgtagttaacactgtggctcttctaagatga

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_5|53_aa
MAVLQIEAEKAELRVKELEVRKLMHVRGDGPWYYYETIDKELIDHSPKATPDN

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_5|162_bp
atggccgtccttcagattgaagctgaaaaggctgaattacgggtaaaggagctggaagtg
cgaaaattgatgcatgtgagaggagatggaccctggtattactatgagacaattgacaag
gaacttattgatcattctccgaaagcaactcctgacaattaa

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_6|59_aa
MAEGKVGAGILHAKVGARNKAYLWAKYFIHISIIKGYSSNLDSWKQKTHDTSRAQEIES

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_6|180_bp
atggcagaaggcaaagtgggagcaggcatcttacatgcaaaagtgggagcaagaaacaag
gcttacctatgggccaagtattttatccacatcagtatcatcaaaggttactcttccaat
ctggattcttggaaacagaagacacatgataccagcagagcccaggagatcgaaagctaa

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_7|104_aa
MIVKPPQPHGTTWYCGTREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDMHFQSAAVGA
LQEASEAYLVGLFEDTNLCAIHAEHVTIMPKDIQLTHHIPEECA

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_7|315_bp
atgattgtgaagcctccccagccacatggaactacctggtactgtggcactcgtgaaatt
agacgttatcagaagtccactgaacttctgattcgcaaacttcccttccagtgtctggtg
cgagaaattgctcaggactttaaaacagatatgcacttccagagtgcagctgttggtgct
ttgcaggaggcaagtgaggcctacctggttggtctttttgaagacaccaacctgtgtgct
atccatgccgaacatgtaacaattatgccaaaagacatccagctaacacaccacatacct
gaagaatgtgcttaa

>gi568815595f:179469822_179688007|GENSCAN_predicted_peptide_8|220_aa
MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPSWLR
NTAVRQTLSERPRAAAAEDWLVLVVLLRQPPQAGRARFPAACTQPRRRLKIDEIQEFPVP
NCTLQIVCVLRGAERRADFILSSECLHYVESVSCRTAVLVCPHSWLSCANSAPLPTCINS
EGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVRE

>gi568815595f:179469822_179688007|GENSCAN_predicted_CDS_8|660_bp
atgcagcgccggggcgccctgttcggcatgccgggcggcagcggaggcaggaagatggct
gcaggagacatcggcgagctgctagtgccccacatgcccacgatccgcgtgcccaggtcc
ggcgacagggtctacaagaacgagtgcgccttctcctacgactctcccagttggctcagg
aacactgcagttcggcagacacttagtgagcgccccagggctgctgcagccgaggactgg
ctcgtgctggtggttttgctccgccagcctccccaggctggaagggcccgattcccagca
gcttgcacacagccccgccgccgtttaaagatagatgaaatacaagagttccctgttccg
aactgcacgttgcagatcgtttgcgtcctccgcggggcagagcgcagggcggacttcatc
ctttcctctgaatgcctgcattacgtagagtctgtgtcatgccgcacagcggttctagtc
tgtcctcatagttggctctcttgtgctaattctgcccccctccccacctgcattaattct
gaaggtggactctatgtatgcatgaatacatttttggcctttggaagggaacatgttgaa
agacattttcgaaaaactggacagagtgtatacatgcacctgaaaagacatgtgcgagag