GENSCAN 1.0 Date run: 6-Nov-116 Time: 08:20:23 Sequence gi568815594r:174137415_174363092 : 225678 bp : 35.98% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 6021 6151 131 1 2 107 47 76 0.392 2.76 1.02 PlyA + 7624 7629 6 1.05 2.00 Prom + 13636 13675 40 -4.15 2.01 Init + 25606 25687 82 0 1 85 97 70 0.820 6.83 2.02 Intr + 36228 36354 127 1 1 52 33 110 0.552 0.72 2.03 Intr + 39829 40049 221 1 2 103 101 81 0.917 7.92 2.04 Term + 41768 41874 107 0 2 67 43 81 0.754 -0.91 2.05 PlyA + 42233 42238 6 1.05 3.00 Prom + 49154 49193 40 -2.35 3.01 Init + 51142 51246 105 0 0 72 67 54 0.479 1.97 3.02 Intr + 52466 52547 82 1 1 78 100 32 0.741 1.69 3.03 Term + 52738 52901 164 2 2 30 43 132 0.586 0.02 3.04 PlyA + 53510 53515 6 1.05 4.04 PlyA - 53863 53858 6 1.05 4.03 Term - 67083 66950 134 1 2 73 47 110 0.585 2.67 4.02 Intr - 74335 74217 119 0 2 21 26 141 0.247 0.39 4.01 Init - 76611 76319 293 0 2 59 99 292 0.968 24.07 4.00 Prom - 94793 94754 40 -5.85 5.12 PlyA - 94830 94825 6 1.05 5.11 Term - 100185 99998 188 1 2 125 42 49 0.935 0.67 5.10 Intr - 101776 101580 197 0 2 91 99 80 0.964 7.54 5.09 Intr - 103804 103686 119 1 2 72 93 70 0.939 4.24 5.08 Intr - 118772 118641 132 2 0 21 23 140 0.481 0.72 5.07 Intr - 122411 122285 127 1 1 90 88 4 0.823 0.36 5.06 Intr - 125686 125350 337 2 1 93 110 195 0.755 15.85 5.05 Intr - 137100 137057 44 2 2 72 91 42 0.052 -0.13 5.04 Intr - 146202 146124 79 1 1 45 42 136 0.174 2.39 5.03 Intr - 146487 146366 122 2 2 74 41 156 0.565 8.72 5.02 Intr - 149798 149588 211 0 1 46 61 146 0.969 4.75 5.01 Init - 151624 151501 124 1 1 38 71 114 0.454 5.08 5.00 Prom - 152165 152126 40 -8.05 6.00 Prom + 153939 153978 40 -8.85 6.01 Init + 155697 155803 107 2 2 30 109 102 0.469 4.28 6.02 Intr + 164625 164772 148 0 1 98 63 105 0.997 8.32 6.03 Intr + 166289 166435 147 1 0 75 86 68 0.963 4.81 6.04 Intr + 166833 166955 123 2 0 71 91 65 0.957 4.96 6.05 Intr + 171275 171445 171 1 0 63 92 187 0.988 15.82 6.06 Intr + 172436 172642 207 1 0 97 63 117 0.988 8.45 6.07 Intr + 173369 173444 76 1 1 62 99 71 0.887 3.77 6.08 Intr + 178752 178876 125 1 2 47 94 45 0.228 0.38 6.09 Term + 183069 183152 84 2 0 76 43 75 0.305 -1.53 6.10 PlyA + 185544 185549 6 1.05 7.03 PlyA - 185922 185917 6 1.05 7.02 Term - 187153 187036 118 0 1 32 37 108 0.330 -2.87 7.01 Init - 194432 194209 224 2 2 55 121 89 0.549 6.98 7.00 Prom - 195635 195596 40 -2.55 8.02 PlyA - 195978 195973 6 1.05 8.01 Sngl - 210042 209227 816 0 0 58 42 375 0.943 25.40 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_1|43_aa XKKFISVEPTQKSPVPNHIIAHSVLTPLSDRPHLPFFICRREY >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_1|132_bp ngtaaaaaatttatatctgtagaaccaactcagaagagtcctgtgccaaaccacataatt gctcactcagtcctcacacctctatcggataggccccacttacccttcttcatctgtcgg cgagaatactga >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_2|178_aa MAILLSIYVVLLSMVAHACSPSDLRGQAYLVLELIYYADQETTGEGLESTLITLKMAKSY YRKKIGQQPHFPIPIQLYLKGPRSILTKQPPADLIHRITSNWHKCVCSPADSDTCQHLDT SGAPDGKSTFHQAKHTFKKHKNHEGDREGLGFQKGIFQTADNSQAKETADITTLHSKT >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_2|537_bp atggctattctactgtcaatctatgtagttctgcttagcatggttgcacatgcttgtagc cccagcgacttgagaggccaagcatatttggttcttgagcttatttattatgctgatcaa gagacaaccggagaaggtttagagagcacattgattacattgaaaatggccaagagttac tacaggaagaaaataggccaacagcctcacttccccatccccatccaactgtatttaaaa ggtcctaggagtattctaactaagcagccaccagctgacctcatccacagaataacttcc aactggcataaatgtgtttgttcacctgctgactcagacacctgccaacacttagacaca tctggggcacctgatggcaaaagcacttttcaccaagcaaaacacaccttcaaaaaacac aaaaatcatgagggtgacagagagggtctaggattccagaaaggtatattccaaactgct gataactcacaagccaaagaaacagctgacattactacccttcatagtaaaacatag >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_3|116_aa MRPTCGLNLNHATQSPGLNQINKAPKPSWPSLESQEEETLTQTQHRGTPCEDMERRQPSP CQVSGGGCVAMSGLLMGPVSSGGQLGGGGSIISLNPVSIIREQSLTVAIYTSDPIV >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_3|351_bp atgaggccaacctgcggtcttaacctcaaccatgctacccagagtccaggactcaaccaa ataaacaaagcccctaaaccatcatggccttccctagaaagtcaggaagaggaaactttg actcagacacaacacagaggaacaccatgtgaagacatggagagaagacagccatcacca tgccaagtctctggtggtggatgtgttgccatgtctgggttgttgatgggtccagtgagc tctggcggtcaactgggtggtggaggctctatcatcagtttgaatccagtcagtatcatc agagaacagtctctaactgtagccatctataccagtgacccaatagtgtga >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_4|181_aa MHVQTPKRPGKRGGSAKSIPRREETNARERFFYTHYGSCTWLPSVTGARGCEDGDREPRR GPREPNTGVPMVLRCGSPMSSPGASESALVVLWDLPFRKVRLFLCLDRARSGRHRVSAID CPATCGAESVVVVTSLRDKIDASGRPALMSALGWPQREKEAQVANSGVSDDRGASFTATL S >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_4|546_bp atgcatgttcagactcccaagagacccggaaaacgcggaggatctgccaaaagcattcca agaagagaagaaaccaacgccagggagagattcttttatacacattatggcagctgcaca tggcttccgtcagtaactggggccagggggtgtgaggacggtgaccgggagccaaggaga gggccacgggaaccgaacaccggagtccctatggtgttgcgctgtgggagtccaatgtct agtcctggagcctccgagagcgcgctggtggtcctttgggaccttccctttcggaaagta cggctgttcctgtgtcttgaccgtgccagatccggtagacaccgtgtgagcgctattgac tgtccagcgacttgcggagctgagagcgtagtggtggtcacttccctgagagacaagatt gatgcatctggaaggccagcactgatgtctgctctggggtggccacagagggaaaaggaa gcacaagttgccaactctggggtgtctgatgaccgtggggcctcattcacagctactctc tcctga >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_5|559_aa MKDKTHMGICTDAEKALDKIRYSFVIKTPNKLGMEEPYSKLALFQNELGYYLGSHNDLYP NGLEIEGIHRFPLLMLILHFNKPPPLSVKMFCTVIGPKLLLVSQLSTSKKKRIPRCRFHT AFKTPVKSDSAESLLNGQSTSNLQLRSFSDLDAGGTLSSEGRSAVSGILIAVTSTGVDKS QINEIQDQDYDYSGLQMGQGLWRVVRNQQLQQEGYSEQGYLTREQSRRMAASNISNTNHR KQVQGGIDIYHLLKARKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLAND ELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEQTSLKYYKNKNT YSHREQDSPKDTVHVTDMGNQAPQQLLAVAHGGVNYFMSKGILDDSPKEIAKFIFCTRTL NWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSH RFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNIS EDFVGHLYDNIYLIGHVAA >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_5|1680_bp atgaaggataaaactcacatgggcatctgcacagatgcagaaaaagcacttgacaaaatt cgatactcttttgtgataaaaactcccaataaactaggtatggaagaaccttatagcaaa ttagctctatttcagaatgagctgggttactacctggggtcccataacgacctatatccc aatggcctagaaatagaaggaatacaccgattccccctcttgatgctgattcttcacttt aataagccaccaccattgtcagtcaagatgttttgcactgtcatcggtcccaaactcctg ctggttagccagctgtctacttccaagaagaaaaggattcctcgctgccgattccacacc gcgttcaagactcctgtgaagagcgactccgctgagagcctcctcaatggccagtccact tctaacttgcagctgagaagtttttctgatcttgatgctggaggtaccctgagttctgag ggtcgtagtgctgtttctggtattctcatcgcggtcacctctaccggtgtggacaaatcc caaattaatgaaattcaggaccaggattatgactactcaggcttgcagatgggtcaaggg ttgtggagagtggtcagaaaccagcagctgcaacaagaaggctacagtgagcaaggctac ctcaccagagagcagagcaggagaatggctgcgagcaacatttctaacaccaatcatcgt aaacaagtccaaggaggcattgacatatatcatcttttgaaggcaaggaaatcgaaagaa caggaaggattcattaatttggaaatgttgcctcctgagctaagctttaccatcttgtcc tacctgaatgcaactgacctttgcttggcttcatgtgtttggcaggaccttgcgaatgat gaacttctctggcaagggttgtgcaaatccacttggggtcactgttccatatacaataag aacccacctttaggattttcttttagaaaattgtatatgcagctggatgaaggcagcctc acctttaatgccaacccagatgagcaaacatcattaaaatattataaaaataagaatact tacagccacagggaacaagattctccaaaggacaccgttcatgtcacggatatgggtaac caagctccacagcagctgctggcagtggctcatgggggagtgaactactttatgtccaag ggtatcctggatgattcgccaaaggaaatagcaaagtttatcttctgtacaagaacacta aattggaaaaaactgagaatctatcttgatgaaaggagagatgtcttggatgaccttgta acattgcataattttagaaatcagttcttgccaaatgcactgagagaattttttcgtcat atccatgcccctgaagagcgtggagagtatcttgaaactcttataacaaagttctcacat agattctgtgcttgcaaccctgatttaatgcgagaacttggccttagtcctgatgctgtc tatgtactgtgctactctttgattctactttccattgacctcactagccctcatgtgaag aataaaatgtcaaaaagggaatttattcgaaatacccgtcgcgctgctcaaaatattagt gaagattttgtagggcatctttatgacaatatctaccttattggccatgtggctgcataa >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_6|395_aa MFKIRSAVVGLLLGLGWVWFLLGSQTNKSSCETLDSLIKGDPAASLPIISYSFTSYSPYV TELIMESNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILN CVMKKHKELSSLQKIPSQQRKKISSGKSEPPLGNEKISAEAVGVDISGRFMTSGKKKAVV IRHLYNEDNVDISEDTLSPITDVNEAVDVSDLNATEIKMPEVKVPEIKAEQQDVNVNPEI TALQTMLAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSK KNDEFIEFNEVSEDYASCSDMDLLNPHRKSEVERPASIPLSSGYSTASSDSTPRASTVNY CGLNEISESPGLSPFFETEGIKLISVEGSDVYLKS >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_6|1188_bp atgttcaaaatcaggtctgcggttgtgggcctgttactggggcttgggtgggtgtggttc cttctgggttcccagacaaacaagtcttcctgtgagaccttggacagtttgataaaggga gacccagcagcatctttgcccatcatcagctattcttttacctcatactcaccttatgta acagaacttataatggaatccaatgtagagctcatagcaaaaaatgacttgcgctttata gatgctgtctataagcttcttcgtgatcaatttaattataaaccaattttgacaaaaaag cagtttatccaatgtgggtttgcagaatggaaaatccaaattgtttgtgatattttgaat tgtgtgatgaaaaagcacaaggaattaagcagtcttcagaagattccatcacaacaaaga aagaaaatcagttctggtaagtcagaacctcctttgggcaatgagaaaatatctgcagag gctgttggcgttgatatcagtggcaggtttatgacctcaggaaagaagaaagctgtggtg attcgtcacttgtataatgaagataatgttgacatttctgaggatacattaagtccaata acagatgttaatgaagcagttgatgtgtctgacttaaatgctactgaaataaagatgcct gaagtaaaggttcctgaaatcaaggctgagcaacaggatgtaaatgttaatcctgagatt actgcactacaaactatgcttgctgaatgccaagaaaatcttaagaaactgacttcgata gagaaaaggttagactgtttggaacaaaaaatgaaaggaaaagtgatggtagatgaaaac acctggactaatcttcttagtcgtgtcactcttcttgaaacagaaatgcttttgtctaaa aagaatgatgaatttatagagtttaatgaagttagtgaagactacgcttcttgtagtgac atggaccttctgaatcctcacagaaaaagcgaagtagagaggccagcaagtattcctctg tcctctggctatagtacagcatcatcagattcaactcccagagcctctactgttaattac tgtggtttgaatgagatttcagagtccccaggtttgtctcctttctttgaaactgaaggc atcaaactgatcagcgtggaaggaagtgatgtttatcttaagtcctaa >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_7|113_aa MKNMSEGLSADILRNFWKIEIRQTTKCYPCSRKEKVISFDMPIKRAGAEEEAGFQAEFWT SWMSFTETSEYSRKRRLTKSSVGMDAEQLKLSYIASGKSKWASQFGKEFGSFS >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_7|342_bp atgaaaaatatgagtgaggggctatcagcagacattttgagaaatttctggaaaatagaa attagacaaacaactaagtgttacccatgtagcaggaaggaaaaagtcatcagttttgat atgcccattaaaagagctggagctgaggaggaagctggtttccaggcagaattctggact tcgtggatgagcttcactgaaacatcagagtacagcaggaaaagaagactgacaaaatca agtgttggtatggatgctgagcaactgaaactctcatacattgctagtgggaaaagcaaa tgggccagccagtttggaaaagagtttggcagtttttcataa >gi568815594r:174137415_174363092|GENSCAN_predicted_peptide_8|271_aa MELKNTARELHEAYTSINSRINQVEERVSGIEDQLNKIKHEDKIREKKNERKEQSLQEIL DYMKRPNLRLIGVPESDEENGTKLENTLQDIIQENFPNLVRQANIQFPEIQRTQLRYSSR RGTPRHIIIRFTKVEMKEQMLRAAIEKGQVTHKGKPIRLIADLSGETLQARREWGPIFNI FKEKNFQPRISYSAQLSFISEGEIKPFTDKQMLRDFCYHQACLIRAPEGSTKYGKEKLVP ATPKHIPKYKEKQHYGETASTNEQNNKLASK >gi568815594r:174137415_174363092|GENSCAN_predicted_CDS_8|816_bp atggagctgaaaaacacagcacgtgaacttcatgaagcatacacaagtatcaatagccga atcaatcaagtggaagaaagggtatcagggattgaagatcaacttaataaaataaagcat gaagacaagattagagaaaaaaagaatgaaaggaaggaacaaagcctccaagaaatattg gactatatgaaaagaccaaacctacgattgattggtgtacctgaaagtgatgaggagaat ggaaccaagttggaaaacacacttcaggatattatccaggagaacttccccaacctagta agacaggccaacatccaatttccggaaatacagagaacacaactaagatactcctcaaga agaggaaccccaagacacataatcatcagattcaccaaggttgaaatgaaggaacaaatg ttaagggcagccatagagaaaggtcaggttacccacaaagggaagcccatcagactaata gcggatctctctggagaaaccctacaagccagaagagagtgggggccaatattcaacatt tttaaagaaaagaattttcaacccagaatttcatattcagcccaactaagcttcataagt gaaggagaaataaaaccctttacagacaagcaaatgctgagggatttttgttaccaccag gcctgccttataagagctcctgaaggaagcactaaatatggaaaggaaaaactggtacca gccactccaaaacacataccaaaatataaagaaaaacaacactatggagaaactgcatca actaatgagcaaaataacaagctagcatcaaaataa