GENSCAN 1.0	Date run:  3-Nov-116	Time: 01:39:44

Sequence gi568815593r:138773013_138974557 : 201545 bp : 43.00% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8911   9017  107  2  2  111  110    58 0.828  10.23
 1.02 Intr +  10165  10360  196  0  1   49  100   256 0.995  21.89
 1.03 Intr +  37026  37192  167  1  2   83   81   158 0.025  14.28
 1.04 Intr +  39171  39290  120  2  0   90   92   128 0.935  14.09
 1.05 Intr +  51518  51787  270  1  0   84  105   194 0.947  18.44
 1.06 Intr +  54503  54706  204  1  0   76   82   371 0.961  34.70
 1.07 Term +  81744  81842   99  2  0   87   48    81 0.165   2.13
 1.08 PlyA +  83342  83347    6                               1.05

 2.02 PlyA -  84889  84884    6                               1.05
 2.01 Sngl - 101512  99998 1515  1  0   50   34   788 0.671  63.01
 2.00 Prom - 103049 103010   40                              -7.76

 3.00 Prom + 105008 105047   40                              -6.46
 3.01 Init + 106831 106833    3  0  0   58  103     0 0.378  -1.50
 3.02 Intr + 113200 113280   81  0  0  108   89    59 0.883   7.83
 3.03 Intr + 114478 114630  153  0  0   21  107   184 0.771  13.87
 3.04 Intr + 131337 131429   93  2  0   77  103    43 0.562   4.86
 3.05 Intr + 144730 144886  157  0  1   64   95   164 0.664  14.28
 3.06 Intr + 151498 151698  201  2  0   99   96   247 0.999  25.86
 3.07 Intr + 152244 152395  152  1  2   99   96   218 0.999  23.58
 3.08 Intr + 153337 153525  189  0  0   58   16   116 0.576   1.18
 3.09 Intr + 156234 156344  111  2  0   81   90   132 0.996  13.28
 3.10 Intr + 157461 157642  182  2  2   53  105   233 0.903  20.17
 3.11 Intr + 157818 157923  106  0  1  105  103   112 0.998  14.62
 3.12 Intr + 159566 159700  135  1  0   71   86   219 0.936  20.76
 3.13 Term + 160790 161077  288  1  0  106   41   391 0.999  31.58
 3.14 PlyA + 161302 161307    6                               1.05

 4.03 PlyA - 161694 161689    6                              -0.45
 4.02 Term - 163475 163305  171  2  0   63   42   100 0.353   0.73
 4.01 Init - 165367 165299   69  1  0   90   95    80 0.816   9.95
 4.00 Prom - 166764 166725   40                              -6.56

 5.07 PlyA - 167256 167251    6                               1.05
 5.06 Term - 174461 174105  357  2  0   24   54   642 0.995  48.91
 5.05 Intr - 175275 175195   81  0  0   74   35    78 0.469   0.93
 5.04 Intr - 178323 178159  165  0  0  113  113   324 0.999  37.56
 5.03 Intr - 178904 178776  129  2  0   75   93   224 0.985  22.49
 5.02 Intr - 181296 181232   65  1  2   80   77    39 0.885   0.44
 5.01 Init - 186141 186075   67  0  1   85  116    46 0.923   8.34

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  37094  37192   99  1  0  100   81   168 0.972  15.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:138773013_138974557|GENSCAN_predicted_peptide_1|387_aa
XMTAVHAGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAH
VLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSV
KRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKA
LKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKA
NRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPLSFSEE
RFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNTLFIK
KGNDGLCNNVILWMHIQCTSYSTGHTL

>gi568815593r:138773013_138974557|GENSCAN_predicted_CDS_1|1164_bp
naaatgactgctgtccatgcaggcaacataaacttcaagtgggatcctaaaagtctagag
atcaggactctggcagttgagagactgttggagcctcttgttacacaggttacaaccctt
gtaaacaccaatagtaaagggccctctaataagaagagaggtcgttctaagaaggcccat
gttttggctgcatctgttgaacaagcaactgagaatttcttggagaagggggataaaatt
gcgaaggagagccagtttctcaaggaggagcttgtggctgctgtagaagatgttcgaaaa
caaggtgatttgatgaaggctgctgcaggagagttcgcagatgatccctgctcttctgtg
aagcgaggcaacatggttcgggcagctcgagctttgctctctgctgttacccggttgctg
attttggctgacatggcagatgtctacaaattacttgttcagctgaaagttgtggaagat
ggtatcttgaagttgaggaatgctggcaatgaacaagacttaggaatccagtataaagcc
ctaaaacctgaagtggataagctgaacattatggcagccaaaagacaacaggaattgaaa
gatgttggccatcgtgatcagatggctgcagctagaggaatcctgcagaagaacgttccg
atcctctatactgcatcccaggcatgcctacagcaccctgatgtcgcagcctataaggcc
aacagggacctgatatacaagcagctgcagcaggcggtcacaggcatttccaatgcagcc
caggccactgcctcagacgatgcctcacagcaccagggtggaggaggaggagaactggca
tatgcactcaataactttgacaaacaaatcattgtggaccccttgagcttcagcgaggag
cgctttaggccttccctggaggagcgtctggaaagcatcattagtggggctgccttgatg
gccgactcgtcctgcacgcgtgatgaccgtcgtgagcgaattgtggcagagtgtaatgct
gtccgccaggccctgcaggacctgctttcggagtacatgggcaatacactgttcattaaa
aagggtaatgatggcttatgtaataatgtcatcctgtggatgcacatccagtgtacttca
tactccacgggacatacactttga

>gi568815593r:138773013_138974557|GENSCAN_predicted_peptide_2|504_aa
MLAAIYAMSMVLKMLPALGMACPPKCRCEKLLFYCDSQGFHSVPNATDKGSLGLSLRHNH
ITELERDQFASFSQLTWLHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLPNTTFTQL
INLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNR
LRSLARNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWTW
GTLEKLDLTGNEIKAIDLTVFETMPNLKILLMDNNKLNSLDSKILNSLRSLTTVGLSGNL
WECSARICALASWLGSFQGRWEHSILCHSPDHTQGEDILDAVHGFQLCWNLSTTVTVMAT
TYRDPTTEYTKRISSSSYHVGDKEIPTTAGIAVTTEEHFPEPDNAIFTQRVITGTMALLF
SFFFIIFIVFISRKCCPPTLRRIRQCSMVQNHRQLRSQTRLHMSNMSDQGPYNEYEPTHE
GPFIIINGYGQCKCQQLPYKECEV

>gi568815593r:138773013_138974557|GENSCAN_predicted_CDS_2|1515_bp
atgctggcagcaatatatgcaatgagtatggttttaaaaatgctgcctgccctgggtatg
gcgtgtccacccaaatgccgctgcgagaagctgctcttctactgcgactctcagggcttc
cactcagtgccaaacgccacagacaagggctctctgggcctgtccctgaggcacaatcac
atcacagagctcgaaagagatcaatttgccagcttcagtcaacttacttggctccactta
gatcacaatcaaatttcaacagtaaaagaagatgcttttcaaggactatataaacttaag
gaattaatcttaagttccaacaaaatattttacttgccaaacacaacttttacccaactg
attaacctgcaaaatttggacctgtcttttaatcagctgtcatctctgcacccagagctc
ttctatggccttcggaagctgcagaccttgcatttacgttccaactccctgcggactatc
ccagtacgcctgttctgggactgtcgtagtctggagtttctggatttgagcacaaatcgt
ttgcgaagtttggctcgcaatggatttgcaggattaattaaactgagagagcttcaccta
gagcacaaccagctgacgaagattaattttgctcatttcctacggctaagcagtctgcac
acgctcttcttacaatggaacaaaatcagcaacttgacatgtgggatggagtggacctgg
ggcactttagaaaagctagacctgactggaaatgaaatcaaagccatcgacttgacagtg
tttgaaacgatgcccaatcttaaaatactcctcatggataacaacaagttaaacagcctt
gattccaagatcttaaactccctgagatccctcacaaccgttggtctctctggcaatctg
tgggaatgcagcgcccgaatatgtgctctggcctcctggctgggcagtttccaaggtcgg
tgggaacactccatcctatgccacagtcctgaccacacccaaggagaggatattctagat
gcagtccatggatttcagctctgctggaatttgtcaaccactgtcactgtcatggctaca
acttatagagatccaaccactgaatatacaaaaagaataagctcatcaagttaccatgtg
ggagacaaagaaatcccaactactgcaggcatagcagttactaccgaggaacactttcct
gaaccagacaatgccatcttcactcagcgggtaattacgggaacaatggctttattgttt
tctttcttttttattatttttatagtgttcatctccaggaagtgctgccctcccacttta
agaagaattaggcagtgctcaatggttcagaaccacaggcagctccgatcccaaacacga
ctccatatgtcaaacatgtcagaccaaggaccgtataatgaatatgaacccacccatgaa
ggacccttcatcatcattaatggttatggacagtgcaagtgtcagcagctgccatacaaa
gaatgtgaagtataa

>gi568815593r:138773013_138974557|GENSCAN_predicted_peptide_3|616_aa
MAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNE
KEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAA
KPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEK
DVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEA
AVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRVQSWQDPALLSTVQMATATL
MEPQKPRPFVRPCCPATGVHPPTHTCAPVLFGPLADFVEDTEATPEELDDSDFETEDFDV
RSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGN
DIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDS
ACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVV
QTVKASYVASTKYQKSQGMASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKH
VNPVQALSEFKAMDSI

>gi568815593r:138773013_138974557|GENSCAN_predicted_CDS_3|1851_bp
atggctggacgtaaagaaagaagtgatgcactcaattctgcaatagataaaatgaccaag
aagaccagggacttgcgtagacagctccgcaaagctgtcatggaccacgtttcagattct
ttcctggaaaccaatgttccacttttggtattgattgaagctgcaaagaatggaaatgag
aaagaagttaaggagtatgcccaagttttccgtgaacatgccaacaaattgattgaggtt
gccaacttggcctgttccatctcaaataatgaagaaggtgtaaagcttgttcgaatgtct
gcaagccagttagaagccctctgtcctcaggttattaatgctgcactggctttagcagca
aaaccacagagtaaactggcccaagagaacatggatctttttaaagaacaatgggaaaaa
caagtccgtgttctcacagatgctgtcgatgacattacttccattgatgacttcttggct
gtctcagagaatcacattttggaagatgtgaacaaatgtgtcattgctctccaagagaag
gatgtggatggcctggaccgcacagctggtgcaattcgaggccgggcagcccgggtcatt
cacgtagtcacctcagagatggacaactatgagccaggagtctacacagagaaggttctg
gaagccactaagctgctctccaacacagtcatgccacgttttactgagcaagtagaagca
gccgtggaagccctcagctcggaccctgcccagcccatggatgagaatgagtttatcgat
gcttcccgcctggtatatgatggcatccgggacatcaggaaagcagtgctgatgataagg
gtgcagtcctggcaagatcctgctctcctgagcacagtgcagatggccacagccacgctg
atggagccgcagaagccgcggccatttgtgcgcccttgctgccctgcaacaggcgtccac
ccacccacccacacctgtgcccctgtcctgtttggcccacttgccgatttcgttgaggat
actgaggcaacccctgaggagttggatgactctgactttgagacagaagattttgatgtc
agaagcaggacgagcgtccagacagaagacgatcagctgatagctggccagagtgcccgg
gcgatcatggctcagcttccccaggagcaaaaagcgaagattgcggaacaggtggccagc
ttccaggaagaaaagagcaagctggatgctgaagtgtccaaatgggacgacagtggcaat
gacatcattgtgctggccaagcagatgtgcatgattatgatggagatgacagactttacc
cgaggtaaaggaccactcaaaaatacatcggatgtcatcagtgctgccaagaaaattgct
gaggcaggatccaggatggacaagcttggccgcaccattgcagaccattgccccgactcg
gcttgcaagcaggacctgctggcctacctgcaacgcatcgccctctactgccaccagctg
aacatctgcagcaaggtcaaggccgaggtgcagaatctcggcggggagcttgttgtctct
ggggtggacagcgccatgtccctgatccaggcagccaagaacttgatgaatgctgtggtg
cagacagtgaaggcatcctacgtcgcctctaccaaataccaaaagtcacagggtatggct
tccctcaaccttcctgctgtgtcatggaagatgaaggcaccagagaaaaagccattggtg
aagagagagaaacaggatgagacacagaccaagattaaacgggcatctcagaagaagcac
gtgaacccggtgcaggccctcagcgagttcaaagctatggacagcatctaa

>gi568815593r:138773013_138974557|GENSCAN_predicted_peptide_4|79_aa
MERRLQMGALEHLNVRGHEEKELNTDMMGNHPPYQVLREHHGFHLDAARRYRSGEASYYQ
AVSCSVERAMWHGTEAFCQ

>gi568815593r:138773013_138974557|GENSCAN_predicted_CDS_4|240_bp
atggagaggaggctccagatgggagccctggagcacctcaatgtcaggggccacgaggag
aaggagctgaatacagacatgatggggaatcaccctccatatcaggttttaagggaacac
catggcttccatctggacgctgctcgcagataccgctctggggaagccagctactaccaa
gctgtgagctgctctgtggaacgggccatgtggcatggaactgaggccttctgtcaatag

>gi568815593r:138773013_138974557|GENSCAN_predicted_peptide_5|287_aa
MADSMAGTGKEQYLVQEHPVPEDLAVGENMNLLPYEPDFSNLQKGSHAVLCFFPSNPKVQ
VEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGGLQVLRTLVQ
EKGTEVLAVRVVTLLYDLVTEKDAGLHPSSVSSASPNQPHDFLLPQEAQMFAEEEAELTQ
EMSPEKLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQTLGVLLTTCRDRYRQ
DPQLGRTLASLQAEYQVLASLELQDGEDEGYFQELLGSVNSLLKELR

>gi568815593r:138773013_138974557|GENSCAN_predicted_CDS_5|864_bp
atggctgattccatggctggcacgggaaaagagcaatatcttgtacaagaacatcctgtg
ccagaagacttggctgtgggtgaaaacatgaatttattgccttatgaacctgatttcagc
aatttacaaaagggtagtcatgctgtcctgtgcttcttccccagcaaccccaaggtccag
gtggaggccatcgaagggggagccctgcagaagctgctggtcatcctggccacggagcag
ccgctcactgcaaagaagaaggtcctgtttgcactgtgctccctgctgcgccacttcccc
tatgcccagcggcagttcctgaagctcggggggctgcaggtcctgaggaccctggtgcag
gagaagggcacggaggtgctcgccgtgcgcgtggtcacactgctctacgacctggtcacg
gagaaggatgcaggattgcacccctcctcagtttcctctgccagccccaatcagccccac
gacttcctgctgccgcaggaagcacagatgttcgccgaggaggaggctgagctgacccag
gagatgtccccagagaagctgcagcagtatcgccaggtacacctcctgccaggcctgtgg
gaacagggctggtgcgagatcacggcccacctcctggcgctgcccgagcatgatgcccgt
gagaaggtgctgcagacactgggcgtcctcctgaccacctgccgggaccgctaccgtcag
gacccccagctcggcaggacactggccagcctgcaggctgagtaccaggtgctggccagc
ctggagctgcaggatggtgaggacgagggctacttccaggagctgctgggctctgtcaac
agcttgctgaaggagctgagatga