GENSCAN 1.0 Date run: 3-Nov-116 Time: 14:32:11 Sequence gi568815593f:32488513_32701081 : 212569 bp : 43.40% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.00 Prom + 6205 6244 40 -0.26 1.01 Init + 34297 34397 101 0 2 101 25 140 0.450 8.74 1.02 Intr + 48126 48183 58 0 1 115 101 38 0.273 6.69 1.03 Term + 49585 49596 12 0 0 108 48 2 0.127 -3.60 1.04 PlyA + 53813 53818 6 1.05 2.05 PlyA - 57658 57653 6 1.05 2.04 Term - 65131 64965 167 2 2 101 46 93 0.593 4.48 2.03 Intr - 68492 68365 128 1 2 64 70 43 0.711 0.42 2.02 Intr - 69247 69069 179 1 2 70 56 85 0.180 2.22 2.01 Init - 88615 88520 96 1 0 59 98 79 0.901 6.31 2.00 Prom - 90984 90945 40 -1.66 3.00 Prom + 94594 94633 40 -3.56 3.01 Init + 100001 100072 72 1 0 60 57 25 0.086 -2.33 3.02 Intr + 103051 103173 123 0 0 52 103 45 0.145 3.18 3.03 Intr + 110449 110557 109 0 1 105 100 13 0.244 4.06 3.04 Term + 112493 112572 80 0 2 75 38 92 0.483 0.83 3.05 PlyA + 112588 112593 6 1.05 4.05 PlyA - 112761 112756 6 1.05 4.04 Term - 123891 123749 143 1 2 54 50 216 0.971 12.49 4.03 Intr - 129123 129093 31 0 1 55 98 20 0.008 -2.60 4.02 Intr - 150106 149986 121 0 1 56 92 109 0.225 8.60 4.01 Init - 165172 165117 56 1 2 54 61 65 0.030 1.16 4.00 Prom - 170851 170812 40 -2.46 5.09 PlyA - 171612 171607 6 1.05 5.08 Term - 175879 175743 137 2 2 88 55 89 0.830 3.78 5.07 Intr - 176995 176926 70 1 1 91 70 24 0.318 -0.35 5.06 Intr - 178886 178518 369 2 0 82 89 78 0.113 2.60 5.05 Intr - 185082 184955 128 1 2 19 64 81 0.066 -0.80 5.04 Intr - 185375 185200 176 1 2 107 -6 101 0.121 2.18 5.03 Intr - 191120 191018 103 0 1 70 72 87 0.246 4.53 5.02 Intr - 193048 192850 199 1 1 36 116 62 0.482 2.72 5.01 Init - 195151 195080 72 1 0 70 70 87 0.737 6.17 5.00 Prom - 212369 212330 40 -2.46 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init - 71042 70987 56 2 2 56 115 51 0.924 5.36 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815593f:32488513_32701081|GENSCAN_predicted_peptide_1|56_aa MPKRGKRLKFWAHDACSGQVTEVDYANSDPAVVRWDCLVAGKQAQGSHGFYIMGET >gi568815593f:32488513_32701081|GENSCAN_predicted_CDS_1|171_bp atgcccaagagaggaaagcgactcaagttctgggcccacgacgcctgctctggacaagtg actgaggtggattacgccaactcggatccagcggtcgtgagatgggactgtctagttgca ggaaaacaagctcagggctcccacggattctacattatgggagaaacatga >gi568815593f:32488513_32701081|GENSCAN_predicted_peptide_2|189_aa METLAEVYLTKSIRDIASNKKNWDLHTEESSKKETSKEISKGPQKPPGYQLCPLQAVGGG EFGPTWIHVPFSLSDLKQIKADLGKFSDDPDRDQEEQAQKEKRDQRKAAALVMALRQTNF GGSERTENGAGQSPGPVAAILLLLAFGLCIFNLLVKFVSSRIDAIKLQMVLQTELQMSST NNFYRGLLD >gi568815593f:32488513_32701081|GENSCAN_predicted_CDS_2|570_bp atggaaactcttgcagaagtatatctgactaagtccatccgggacatagcatccaacaag aaaaactgggatctacacacagaagaaagtagcaagaaggaaacaagcaaagaaatctcc aaaggaccacaaaaacccccaggctatcagttatgtcccttgcaagctgtagggggaggg gaatttggcccaacctggatacatgtccccttctccctctctgatttaaagcagatcaag gcagacctggggaagttttcagatgatcctgatagggaccaagaggaacaggcccaaaag gaaaagcgagatcagagaaaggccgcagccttagtcatggccctcagacaaacaaacttt ggtggttcagagaggacagaaaatggagcaggccaatcacccggtcccgtggcagccatc ttgctgttactcgcctttgggctttgtatttttaacctccttgtcaaatttgtttcctct agaattgacgccatcaagctacagatggtcttacaaacggaactccaaatgagttcaact aacaacttctaccgaggactcctggactga >gi568815593f:32488513_32701081|GENSCAN_predicted_peptide_3|127_aa MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI DDAVRKL >gi568815593f:32488513_32701081|GENSCAN_predicted_CDS_3|384_bp atgcctaaatcaaaggaacttgtttcttcaagctcttctggcagtgattctgacagtgag gttgacaaaaagttaaagaggaaaaagcaagttgctccagaaaaacctgtaaagaaacaa aagacaggtgagacttcgagagccctgtcatcttctaaacagagcagcagcagcagagat gataacatgtttcagattgggaaaatgaggtacgttagtgttcgcgattttaaaggcaaa gtgctaattgatattagagaatattggatggatcctgaaggtgaaatgaaaccaggaaga aaaggtatttctttaaatccagaacaatggagccagctgaaggaacagatttctgacatt gatgatgcagtaagaaaactgtaa >gi568815593f:32488513_32701081|GENSCAN_predicted_peptide_4|116_aa MVEDAEPDEISRVIRHQGSPKATQNKIGIFTRRRKSPDSPEQGAEPNKNSVHTRGQASEN MDCGCMENEDFCTTGADSKKNADPSMAKGRPQECRPMAKVDIKNADLSTAKVDIIP >gi568815593f:32488513_32701081|GENSCAN_predicted_CDS_4|351_bp atggtggaggatgcggaacctgatgagatatcaagggtgatcagacatcaaggtagtcct aaagctacacagaacaagataggcatcttcaccaggagacgaaagagccctgatagccca gagcagggtgcagagcccaacaagaacagcgttcacacgcgggggcaggccagtgagaac atggactgcgggtgtatggaaaatgaagacttttgcaccactggggcagacagcaagaag aatgcagacccgtctatggccaagggcagaccacaagaatgcagacctatggccaaggtt gacatcaagaatgcagacctgtctacggccaaggtcgacatcatcccttga >gi568815593f:32488513_32701081|GENSCAN_predicted_peptide_5|417_aa MVSAFASGEGFNLLPLMVEGKKELPSDHTYGKAHYNGLLKLCRAGNGKLLCYCLSGGGPE TLQQGALFTMNRTLDHTPVCPLYVEREVAQVGMKESKMLEMMESKKQYSIRGKVKAHDDS YTGLGIKVIMLQMVLQMEPQMSSTNNFYRGQLDQLAGPSAGLKSSPLEDPTTAGPLLCPY PAGTLTSSLAALEEPFSPPLHYGGPSLGLAKAGACSLFLQGGVEGEMPSEYGPSKVQVPF SLQDLRQIKGDLGKFSDDRDRYIEASQNLTQVFELYWKDIMLLLNQTLTDTEKQATLQVA ERFGNELCISYSIRERYKPYPIGREAVTLDDPRWDPSDGMGEWKRKHFQVKVLQNIDDIL FCSSPEEISQEDRKTGELEHDCEQIVVQTHVAREDLKETPSENPYWILFMDGSSFVE >gi568815593f:32488513_32701081|GENSCAN_predicted_CDS_5|1254_bp atggtgtcagcatttgcttctggtgagggcttcaacctgcttccactcatggtggaaggc aaaaaggagctgccttcagatcacacctatggtaaggcccattataacgggctgctgaag ctgtgcagagctggaaatgggaagctgctgtgctattgcctgtctggaggtggccctgaa acactacagcaaggggcactattcacaatgaacagaactttagaccacacacctgtttgc ccactttatgtggaaagagaagtggctcaagtggggatgaaggaatccaagatgttagag atgatggagtccaagaagcagtattcaatcagaggtaaagtcaaagcacatgatgactct tacacaggtctaggaatcaaggtcatcatgctacagatggtcttacaaatggaaccccaa atgagctcaactaacaacttctaccgaggacagctggaccaacttgctggcccttctgct ggcctaaagagttcacctctggaggaccctacaactgcagggcctcttctttgcccctat ccagcaggaaccttgacgtcctctctggctgcgctcgaggagcccttcagcccaccgctg cactatgggggcccctctctggggctggccaaggccggagcttgctccctcttcctgcag ggaggtgtggagggagagatgcctagtgaatatggtcccagtaaggtccaggtccccttc tctctacaagacttaaggcaaattaagggggatcttggcaagttttcagatgaccgtgac aggtatatagaggcttcccagaatttaacccaagtatttgaactctactggaaagacatt atgttacttttgaatcaaaccctgactgacactgagaagcaggccactctgcaagtggca gagagatttgggaatgagctttgtatctcatatagtatcagggaaaggtataagccttat ccaattggaagggaagcagtaacattggatgaccctagatgggatcccagtgatggaatg ggagaatggaagaggaaacactttcaggttaaagttttacaaaacatagatgacattctc ttctgctcctcacctgaggaaatctctcaggaggacaggaaaactggggagcttgaacat gactgtgaacagatagtagtacaaacacatgtagccagagaggacctcaaggaaacaccc tcagagaacccatactggattctttttatggatggaagttcttttgtagaatga