GENSCAN 1.0	Date run:  6-Nov-116	Time: 06:37:59

Sequence gi568815593f:10342168_10564944 : 222777 bp : 44.31% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11732  11829   98  1  2   91   64    93 0.045   4.98
 1.02 Intr +  31413  31506   94  0  1  111   43    91 0.035   6.87
 1.03 Intr +  33041  33418  378  1  0   -8   49   256 0.006   7.26
 1.04 Intr +  35631  35727   97  2  1   59  115    32 0.193   2.58
 1.05 Intr +  39633  39776  144  1  0   74   84    24 0.238   0.85
 1.06 Intr +  44827  44899   73  2  1   83   92    60 0.819   4.36
 1.07 Intr +  48165  48333  169  0  1   96   78    -9 0.714  -1.15
 1.08 Intr +  49375  49564  190  0  1   60   57   258 0.796  19.06
 1.09 Intr +  58617  58675   59  1  2   83   94    10 0.670  -0.30
 1.10 Intr +  61240  61374  135  0  0  114  107    21 0.575   7.36
 1.11 Intr +  64935  65035  101  2  2  101  111   -15 0.163   1.01
 1.12 Intr +  69166  69370  205  1  1   53   73    75 0.129   1.70
 1.13 Intr +  72266  72335   70  1  1  101   80    22 0.105   1.45
 1.14 Intr +  73321  73502  182  2  2   72   80    58 0.104   2.99
 1.15 Intr +  75103  75237  135  0  0   99   99   -11 0.093   1.86
 1.16 Intr +  81568  81657   90  0  0   67  115     3 0.673   1.09
 1.17 Intr +  84223  84355  133  0  1   93   84    93 0.998   9.62
 1.18 Intr +  87726  87861  136  1  1  104  108    96 0.989  12.83
 1.19 Term +  91427  91517   91  2  1   59   39   122 0.956   1.59
 1.20 PlyA +  92640  92645    6                               1.05

 2.00 Prom +  96579  96618   40                              -5.56
 2.01 Init + 100001 100131  131  1  2   81   86   216 0.559  20.32
 2.02 Intr + 106093 106216  124  1  1   52   80    55 0.734   1.69
 2.03 Intr + 107785 107946  162  0  0   66   63    87 0.218   4.17
 2.04 Intr + 119017 119192  176  0  2   55   92   183 0.325  14.14
 2.05 Term + 138429 138615  187  0  1   67   54   182 0.785   9.66
 2.06 PlyA + 143419 143424    6                               1.05

 3.00 Prom + 150116 150155   40                              -5.86
 3.01 Init + 153715 153727   13  0  1  114   96     1 0.714   4.07
 3.02 Intr + 160542 160758  217  1  1   90   66   101 0.302   5.66
 3.03 Term + 182624 182798  175  2  1   51   55   125 0.012   2.73
 3.04 PlyA + 183125 183130    6                               1.05

 4.04 PlyA - 185282 185277    6                               1.05
 4.03 Term - 196574 196398  177  2  0  125   49    47 0.490   2.19
 4.02 Intr - 198067 197906  162  1  0   58   22   109 0.100   1.47
 4.01 Init - 206974 206819  156  1  0   47   15   166 0.107   5.23
 4.00 Prom - 208737 208698   40                              -4.36

 5.00 Prom + 212037 212076   40                              -4.96
 5.01 Init + 222301 222666  366  0  0  100   98   698 0.971  67.02

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  75106  75237  132  0  0   63   99   117 0.840   8.44


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:10342168_10564944|GENSCAN_predicted_peptide_1|859_aa
MDTAEEGKSATRGARALASAPGFVPRPGPRRSRQQCASRTVFAIPQAIVNGRPVTMFLEG
SVPRLEFRVGMGLVGLHSEQPAGPAGPGSERLGTRASGCRGCTGSPSSAGPPALCSISCR
ALAAFPLGRARDLQPAMPEPPTHSMGSCAARASPTSTTLCSTAPSPIDHPRAEECQRMAR
DWQAAPPAARTYVECVGQKEHLRNRFIILVYVLAVLSLSIKNVYSPDMPSRLPIQDIFAG
LVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTENLLA
DCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAE
NVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQAFCPYH
IGHFSLVGLGFEEHEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREI
VFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYRDLHSYLLGDQEENENSANQQVNNNQHA
RNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLIC
LTLPVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVK
EWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAK
IIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGV
VPLLGVTAEMQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNY
ERKSGKQGSSPPPPQSSQE

>gi568815593f:10342168_10564944|GENSCAN_predicted_CDS_1|2580_bp
atggacaccgcggaggaaggtaagtcggcgacgcgcggcgcccgagcccttgcgtcggcg
cccgggttcgtaccccggccaggtccgcggcgctcgaggcagcaatgtgccagcaggact
gtctttgccataccccaggccatagtcaatggccgacccgtcacgatgttcctggagggc
agcgtcccacggctggagttccgggtgggcatgggcttggtgggcctgcactcggagcag
ccggccggccctgccggcccaggcagtgagagacttggcacccgggccagcggctgcaga
gggtgtactgggtcccccagcagtgccggcccaccggcgctgtgctcgatttcttgccgg
gccttagctgccttcccgctgggcagggctcgggacctgcagcccgccatgcctgagcct
cccacccactccatgggctcctgtgcggcccgagcctccccgacgagcaccaccctctgc
tccacggcgcccagtcccatcgaccacccaagggctgaggagtgccagcgcatggcgcgg
gactggcaggcagctccacctgcagcccggacatatgtagagtgtgtcggtcagaaggaa
cacctgagaaaccgctttatcatccttgtgtatgtactggcagtattaagtttatccatc
aagaatgtttattctccagatatgccttcacggcttccaattcaagacatatttgctgga
ctggttacaagtattggcactgcaatacgatattggtttcattatacacttgtggccttt
gcatggttgggagttgttcctcttacagcatgccgcatctacaagtgcttgtttactggc
tccgtgagctcactactgacgctgccattagatatgctgtcaacggaaaatttgttggca
gattgtttgcagggttgttttgtggtgacgtgcacactgtgtgcattcatcagcctggtg
tggttgagagagcagatagtccatgggggagcaccaatttggttggagcatgctgcccca
ccgttcaatgctgcggggcatcaccaaaatgaggctccagcaggaggaaatggtgcagaa
aatgttgctgctgatcagcctgctaacccaccagctgagaacgcagtggtgggggaaaac
cctgatgcccaggatgaccaggcagaagaggaggaggaggacaatgaggaggaagatgac
gctggtgtggaggatgcggcagatgctaataacggagcccaggcattttgcccttaccat
attggtcatttctcccttgttggtttgggatttgaagaacacgaaatgtttgatgctact
ctgaaagatcgagaactgagctttcagtcggctccaggtactaccatgtttctgcattgg
ctagtgggaatggtatatgtcttctactttgcctccttcattctactactgagagagatt
gtctttggctccattgtcctcctgatgctttggcttcctatacgtataattaagagtgtg
ctgcctaattttcttccatacaatgtcatgctctacagggatcttcattcttatttattg
ggagaccaggaagaaaatgaaaacagtgcaaatcaacaagttaacaataatcagcatgct
cgaaataacaacgctattcctgtggtgggagaaggccttcatgcagcccaccaagccata
ctccagcagggagggcctgttggctttcagccttaccgccgacctttaaattttccactc
aggatatttctgttgattgtcttcatgtgtataacattactgattgccagcctcatctgc
cttactttaccagtatttgctggccgttggttaatgtcgttttggacggggactgccaaa
atccatgagctctacacagctgcttgtggtctctatgtttgctggctaaccataagggct
gtgacggtgatggtggcatggatgcctcagggacgcagagtgatcttccagaaggttaaa
gagtggtctctcatgatcatgaagactttgatagttgcggtgctgttggctggagttgtc
cctctccttctggggctcctgtttgagctggtcattgtggctcccctgagggttcccttg
gatcagactcctcttttttatccatggcaggactgggcacttggagtcctgcatgccaaa
atcattgcagctataacattgatgggtcctcagtggtggttgaaaactgtaattgaacag
gtttacgcaaatggcatccggaacattgaccttcactatattgttcgtaaactggcagct
cccgtgatctctgtgctgttgctttccctgtgtgtaccttatgtcatagcttctggtgtt
gttcctttactaggtgttactgcggaaatgcaaaacttagtccatcggcggatttatcca
tttttactgatggtcgtggtattgatggcaattttgtccttccaagtccgccagtttaag
cgcctttatgaacatattaaaaatgacaagtaccttgtgggtcaacgactcgtgaactac
gaacggaaatctggcaaacaaggctcatctccaccacctccacagtcatcccaagaataa

>gi568815593f:10342168_10564944|GENSCAN_predicted_peptide_2|259_aa
MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
DVSPLETESYLASLKENMHASECGLMLSVSSSVSGSSECGPRTRSISIPWESLGNAESWD
PAQTQSESDFQAARVLIDV

>gi568815593f:10342168_10564944|GENSCAN_predicted_CDS_2|780_bp
atgccgcttcccgacaccatgttctgcgctcagcagatccacattcccccggagctgccg
gacatcctgaagcaattcaccaaggctgccatccgcacccagccggccgacgtgctgcgg
tggtccgcgggctatttttcagctctgtcgagaggagatccacttcctgtaaaggacaga
atggaaatgcccacggcaacccagaaaacagacacaggcctgactcaaggactcctgaaa
gttttgcacaagcagtgtcaccacaagcggtatgtggaattaacagatcttgagcagaag
tggaagaacttgtgcctgccgaaggaaaaattcaaagcgctcttacaactggatccttgt
gaaaacaaaatcaagtggataaactttttagcgcttggatgcagcatgcttggtgggtcc
ttgaacactgcgctgaagcacctgtgcgagatcctcacggacgatccggagggcgggccc
gctcgcatccccttcaagacgttttcctacgtttaccgctacttggccagattagactca
gatgtgtctcccttggagacggaatcctaccttgcctctctaaaggaaaatatgcatgcc
agcgagtgtggccttatgttgagtgtgtcctccagtgtgagtggctcctccgagtgtggt
ccaaggacccgcagcatcagcatcccctgggagagccttggaaatgcagaatcttgggat
ccagctcagacccagtcagaatcagatttccaggcagctcgtgtgctcattgatgtctga

>gi568815593f:10342168_10564944|GENSCAN_predicted_peptide_3|134_aa
MPGQASALFTPDGRQRWSQESSAHDCAPGGSTSVCTQKAHRRDVVACKALLPARLHGRLH
RLLGNDSRSKDEGYSARGLAIAKPPHVAFPEDSTITDLTVIGPIRRQLWTPDGPGVEPHC
WWLSSLAHFLPQHL

>gi568815593f:10342168_10564944|GENSCAN_predicted_CDS_3|405_bp
atgcccggccaggcttccgccttattcacccctgatgggaggcagaggtggagccaggag
agctctgctcatgactgtgctccaggaggctccacctccgtgtgcacccagaaggcccac
aggagagatgttgtagcctgcaaagcactactgcctgcacgactgcacggccggctccac
aggctcctcggaaacgacagcaggagcaaagatgagggctacagtgccagggggctggcc
attgccaagcctccccacgtggcctttccagaagacagtaccatcactgacctcactgtc
attggccccattcgccggcagctctggacaccagatgggcctggcgtggagcctcattgc
tggtggttaagcagtttagctcacttcttacctcagcatctttga

>gi568815593f:10342168_10564944|GENSCAN_predicted_peptide_4|164_aa
MPTRTLTQTHANMLTRTPTHADTHTNTCRHAHQHMPTRTLTHADTRANTCRHALATLNWV
SRRCKASWNELEEACAIDQVSRICWYGLNVCLPANSCVEALTPSMMVAAYREHTKPRIKG
CKGDAKPRLGGCREDTKHRLEGCREDAKPSLRGCREYAKPRLRG

>gi568815593f:10342168_10564944|GENSCAN_predicted_CDS_4|495_bp
atgccgacacgcacgctaacgcagacacatgctaacatgctgacacgcacaccaacacat
gccgacacgcacaccaacacatgccgacacgcacaccaacacatgccgacacgcacgcta
acacatgctgacacgcgtgctaacacatgccgacacgccttggcaaccctgaactgggta
tcccgtcggtgcaaagcatcgtggaatgaactagaggaggcctgtgccatagatcaggtc
tcccgtatctgctggtatggactgaatgtttgtctccccgccaattcttgtgttgaagcc
ctaacccccagtatgatggtggctgcctacagagagcacaccaagccaaggatcaaaggc
tgcaaaggggacgccaagcccaggctcgggggctgcagagaggacaccaagcataggctc
gaaggctgcagagaggatgccaagcccagcctcagaggctgcagagaatacgccaagccc
aggctcagaggctga

>gi568815593f:10342168_10564944|GENSCAN_predicted_peptide_5|122_aa
MVLLAGTGPEGGGARCMTPPPPSPPRGAQVEEDPADYEEFEDFSSLPDTRSIASDDSFYP
FEDEEEHGVESAESVPEGVPESVPETATLLRAACANNVGLLRTLVRRGVSVEEAQETDRN
GR

>gi568815593f:10342168_10564944|GENSCAN_predicted_CDS_5|366_bp
atggtgctgctggccgggaccgggccggagggcggcggggcgcgctgcatgaccccacca
ccgccgtccccaccccggggcgcgcaggtcgaggaggaccccgctgactacgaagagttt
gaggacttctcgagtctgccagacacccgcagcatcgcctcggacgactctttctaccct
ttcgaggacgaggaggagcacggcgtcgagagcgcggagagcgtcccggagggcgtcccg
gaaagcgtcccggagacggcgaccctcctgcgcgccgcctgcgccaacaacgtggggctg
ctgcggacgctggtgcggcgcggggtgagcgtcgaggaggcgcaggagactgaccgcaac
ggcagg