GENSCAN 1.0 Date run: 5-Nov-116 Time: 11:20:44 Sequence gi568815592r:55655536_55974865 : 319330 bp : 34.90% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.02 PlyA - 625 620 6 1.05 1.01 Sngl - 25342 25037 306 1 0 86 43 223 0.935 13.22 1.00 Prom - 28570 28531 40 -5.85 2.00 Prom + 28693 28732 40 -6.85 2.01 Sngl + 30299 30649 351 1 0 49 37 340 0.980 20.80 2.02 PlyA + 30907 30912 6 1.05 3.00 Prom + 31166 31205 40 -10.45 3.01 Sngl + 31403 31999 597 1 0 44 43 256 0.850 12.64 3.02 PlyA + 32067 32072 6 -1.75 4.00 Prom + 32075 32114 40 -10.05 4.01 Sngl + 32714 34336 1623 1 0 37 48 391 0.844 25.05 4.02 PlyA + 34371 34376 6 -0.45 5.00 Prom + 34667 34706 40 -3.95 5.01 Init + 38812 38872 61 0 1 84 37 43 0.001 0.26 5.02 Intr + 55890 56193 304 1 1 74 83 188 0.231 11.62 5.03 Term + 60231 60369 139 0 1 98 32 67 0.749 -1.45 5.04 PlyA + 60410 60415 6 1.05 6.00 Prom + 71317 71356 40 -5.45 6.01 Init + 81030 81199 170 2 2 88 86 109 0.708 9.75 6.02 Intr + 81526 81718 193 1 1 2 91 105 0.328 0.77 6.03 Term + 84618 85217 600 2 0 75 43 172 0.516 4.94 6.04 PlyA + 86143 86148 6 1.05 7.09 PlyA - 86365 86360 6 1.05 7.08 Term - 100147 99998 150 1 0 111 34 72 0.324 1.03 7.07 Intr - 103580 103470 111 2 0 45 107 37 0.420 0.96 7.06 Intr - 104998 104922 77 2 2 69 91 50 0.601 1.72 7.05 Intr - 114918 114701 218 2 2 32 65 185 0.215 7.82 7.04 Intr - 118193 118166 28 0 1 42 99 12 0.239 -6.04 7.03 Intr - 118708 118514 195 2 0 99 94 168 0.422 16.96 7.02 Intr - 138892 138744 149 0 2 143 103 87 0.978 14.66 7.01 Init - 144226 144159 68 1 2 69 10 55 0.343 -3.60 7.00 Prom - 144418 144379 40 -7.35 8.00 Prom + 144992 145031 40 -6.05 8.01 Init + 146508 146775 268 2 1 80 100 143 0.923 11.89 8.02 Term + 148168 148286 119 2 2 23 54 147 0.514 2.52 8.03 PlyA + 148492 148497 6 1.05 9.07 PlyA - 148531 148526 6 1.05 9.06 Term - 152671 152551 121 0 1 114 34 103 0.480 4.47 9.05 Intr - 164312 164120 193 0 1 87 43 247 0.711 17.73 9.04 Intr - 219139 218841 299 0 2 77 77 259 0.825 19.29 9.03 Intr - 244148 244092 57 1 0 66 98 53 0.085 1.18 9.02 Intr - 246659 246553 107 2 2 61 111 47 0.203 2.39 9.01 Init - 248772 248641 132 0 0 63 37 97 0.355 2.29 9.00 Prom - 272546 272507 40 -3.65 10.08 PlyA - 273376 273371 6 1.05 10.07 Term - 284752 284477 276 1 0 -25 44 417 0.647 20.48 10.06 Intr - 285105 284952 154 2 1 60 115 118 0.109 10.85 10.05 Intr - 296173 296037 137 1 2 48 74 102 0.390 3.25 10.04 Intr - 296327 296294 34 1 1 129 60 36 0.848 2.21 10.03 Intr - 300381 300269 113 0 2 106 45 105 0.934 6.26 10.02 Intr - 301093 301003 91 0 1 38 66 72 0.018 -0.92 10.01 Intr - 310824 310749 76 1 1 69 116 82 0.441 6.75 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term - 38930 38748 183 2 0 39 45 152 0.973 2.56 S.002 Init - 40252 40205 48 1 0 67 89 75 0.920 6.50 S.003 Init + 255393 255530 138 2 0 97 91 46 0.842 5.99 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_1|101_aa MRFKTSGCSSAVASSPLATDRVKKNMIEEAYTLKNTDITKEPCLPPVKLPAPCWLRMQLR PLGWLQTKIRTRERRGGEEMCPPRSLKPATPAVCPPAVQSP >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_1|306_bp atgaggtttaaaacatctggctgcagttctgcagttgcctccagcccgttagccactgac cgggtgaaaaagaatatgatagaggaagcctataccctcaaaaacacagacatcaccaag gagccctgccttcctcctgtgaaactgcctgctccatgctggctgaggatgcaactaagg ccacttggctggttacaaactaaaataaggacccgagaaaggagaggtggagaagaaatg tgccctccgagaagccttaagccggccacaccagctgtttgcccacctgctgtgcagtca ccttag >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_2|116_aa MELKTKARELREECRSLRSQCDQLEERVSAMEDEINEMKREGKFREKRIKSNEQSLQEIW VYVKRPNLRLIGVPESDGENGTKLENNLQDIMQENFPNLARQANIQIQEIQRMPQR >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_2|351_bp atggagctgaaaaccaaggctcgagaactacgtgaagaatgcagaagcctcaggagccaa tgcgatcaactggaagaaagggtatcagcgatggaagatgaaattaatgaaatgaagcga gaagggaaatttagagaaaagagaataaaaagtaacgagcaaagcctccaagaaatatgg gtctatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacggggagaat ggaaccaagttggaaaacaatctgcaggatattatgcaggagaacttccccaatctagca aggcaggccaacattcaaattcaggaaatacagagaatgccacaaagatag >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_3|198_aa MVKGSIQQEELTILNIDAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSMR QKVNKDTQELNSALHQVDLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHILGSKALLSKCK RTGIVTNYLSDHSAIKLELRIKKLTQNRSAIWKLNNLLLNDYWVHNEMKAEIKMFFETNE NKDATYQNLRDAFKAVCR >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_3|597_bp atggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaat acaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcc cacacattaataatgggagactttaacaccccactgtcaacattagacagatcaatgaga cagaaagtcaacaaggatacccaggaattgaactcagctctgcaccaagtggacctaata gacatctacagaactctccaccccaaatcaacagaatatacatttttttcagcaccacac cacacctattccaaaattgaccacatacttggaagtaaagctctcctcagcaaatgtaaa agaacaggaattgtaacaaactatctctcagaccacagtgcaatcaaactagaactcagg attaagaaactcactcaaaaccgctcagctatatggaaactgaacaacctgctcctgaat gactactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgag aacaaagacgcaacataccagaatctaagggatgcattcaaagcagtgtgtagatag >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_4|540_aa MNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHM IISVDAEKAFDKIQQPFMLKTINKLGIDGTYFKIIRAIYDKPTTNIILNGQKLEAFPLKT GTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKQEVKLSLFVDDMIVYLENPIVSA QNLLKLISNFSKVSGYKISVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIPLTR DVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILSKVIYRFNAIPIKLPMT SFTELEKTTLKFIWNQKRAHIPKSILSQKNKAGGITLPDFKLYYKAIVTKTAWYWYQNRD IDQWNRTEPSEITPLIYNYLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTP YTKINSRWIKDLHVRPETIKTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIK LKSFCTAKETTIRVNRQPTKLEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKNGRRI >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_4|1623_bp atgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatc aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat atacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatg attatctcagtagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaa actataaataaattaggtattgatgggacgtatttcaaaataataagagctatctatgac aaacccacaaccaacatcatactgaatgggcaaaaactggaagcattccctttgaaaact ggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctg gccagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaacaggaagtc aaattgtccctgtttgtagacgacatgattgtatatctagaaaaccccattgtctcagcc caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcagtgta caaaaatcacaagcattcttatacaccaacaacagacaaacagagagccaaatcatgagt gaactcccattcacaattgcttcaaagagaataaaatacctaggaatcccacttacaagg gacgtgaaggacctcttcaaggagaactacaaaccacttctgaaggaaataaaagaggat acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatg gccatactgtccaaggtaatttacagattcaatgccatccccattaagctaccaatgact tccttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagggcccac atccccaagtcaatcctaagccaaaagaacaaagctggaggaatcacactacctgacttc aaactatactacaaggcaatagtaaccaaaacagcatggtactggtaccaaaacagagat atagatcaatggaacagaacagagccctcagaaatcacgccgcttatctacaactatctg atctttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatgg tgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacacct tatacaaaaatcaattcaagatggattaaagacttacatgttagacctgaaaccataaaa accctagaagaaaacctaggcattaccattcaagacataggcatgggcaaggacttcatg tctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaa ctaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaa ttggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaat gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaatgggcgaaggata tga >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_5|167_aa MPSNRPQECKSSTKPRVELAGEKKRHIGRSWNDLVALGYNVFNCLRWEDRQKLYVQGPVA RGMITKSNGLKRQIISTLESEEADETGEVSRYQITGACQQFNEVNLYPKDTGKSLRDFYA ISSSAMVSVSVLHVWPMTILLPVWPKKAKRLDTPEVKYIPFYFRPVN >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_5|504_bp atgccgagcaacaggccacaggaatgcaaatcatccacaaagccaagagtggagctagca ggagaaaagaagaggcacataggaagatcctggaatgacctagtggccttgggctataac gtattcaactgtctgaggtgggaagacaggcagaaactatacgtgcaaggccctgtggcc agaggaatgatcactaaaagcaatggattgaaaaggcagataatctcaactttagaaagt gaagaagcagatgagactggagaggtatcaaggtaccagatcacaggggcttgtcagcaa tttaatgaagttaatctttatcctaaggacaccgggaagtcactgagagatttttatgca ataagctcatcagcaatggttagtgttagtgtacttcatgtgtggcccatgacaattctt cttcccgtgtggcccaaaaaagccaaaagattggacacccctgaagtgaaatatattccc ttttattttagaccagttaactaa >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_6|320_aa MGKKQSRKTGNSKNQSASPPPKECSSSPATEQRWMENDFDELREEGFRRSNYSKLKYDGE NGTKLENTLQDITQENFPNLARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEK MNWKKKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYCKATVNKTAWYWYQNRVI NQCNRTEPSEIMRYIYNYLIFDKPEKNKKWGKDSLLNNWCWENWLAICRTLKLDPFLIPY TKINSRWIKDLHVRPKTIKTLEENLGNTIQDIGMGKDFMSETPKAMATKAKIDKWDLIKL KSFCTAKETTIRVNRQPTEW >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_6|963_bp atggggaaaaaacagagcagaaaaacaggaaactctaaaaatcagagcgcctctcctcct ccaaaggaatgcagctcctcaccagcaacagaacaaagatggatggagaatgactttgat gagttgagagaagaaggcttcagaagatcaaactactccaagctaaagtatgacggggag aatggaaccaagttggaaaacaccctgcaggatattacccaggagaacttccccaatcta gcaaggcaggccaacattcagattcaggaaatacagagaatgccacaaagatactcctcg agaagagcaactccaagacacataatcgtcagattcaccaaagttgaaatgaaggaaaaa atgaattggaaaaaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatt gccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaa ctatactgcaaggctacagtaaacaaaacagcatggtactggtaccaaaacagagttata aaccaatgtaacagaacagagccctcagaaataatgcggtacatctacaactatctgatc tttgacaaacctgagaaaaacaagaaatggggaaaggattccctattgaataactggtgc tgggaaaactggctagccatatgtagaacgctgaaactggatccctttcttataccttac acaaaaattaattcaagatggattaaagacttacatgttagacctaaaaccataaaaacc ctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtct gaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacta aagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgg tag >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_7|331_aa MVDSHTITQGAEMVQKGAVGQLKDADLFLLDTRKAQALDVGWLVFDITVTSNHWVINPQN NLGLQLCAETGDGRSINVKSAGLVGRQGPQSKQPFMVAFFKASEVLLRSVRAANKRKNQN RNKSSSHQDSSRMSSVGGPFKNGWSTSLIQSKALILLNSMKAERAEEAAEEKSESSRYWF MTFKERSCLHSKKVQGETASIDEEAIASYPGDLSKITDEDYNTSEQKQACKKHELYVSFR DLGWQDWIIAPEGYAAFYCDGECSFPLNAHMNATNHAIVQTLVHLMFPDHVPKPCCAPTK LNAISVLYFDDSSNVILKKYRNMVVRSCGCH >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_7|996_bp atggtggattcccacaccatcacccagggagcagagatggttcagaagggagctgtagga caattgaaggatgcagatctgttcttgttagacacaagaaaggcccaagctttagatgtg ggttggcttgtctttgatatcactgtgaccagcaatcattgggtgattaatccccagaat aatttgggcttacagctctgtgcagaaacaggggatggacgcagtatcaacgtaaaatct gctggtcttgtgggaagacagggacctcagtcaaaacaaccattcatggtggccttcttc aaggcgagtgaggtacttcttcgatccgtgagagcagccaacaaacgaaaaaatcaaaac cgcaataaatccagctctcatcaggactcctccagaatgtccagtgttggagggcctttc aaaaatggatggtcaaccagccttattcagagcaaagccctgattctcctcaattctatg aaggctgagagagctgaggaagctgcagaagaaaagtctgaaagtagcagatattggttc atgacgtttaaggaaagaagctgtctccatagcaaaaaagtgcaaggtgaaacagcaagt attgatgaagaagctatagcaagttatccaggagatctatctaagatcactgatgaagat tataacacaagtgagcaaaaacaagcctgtaagaagcacgaactctatgtgagcttccgg gatctgggatggcaggactggattatagcaccagaaggatacgctgcattttattgtgat ggagaatgttcttttccacttaacgcccatatgaatgccaccaaccacgctatagttcag actctggttcatctgatgtttcctgaccacgtaccaaagccttgttgtgctccaaccaaa ttaaatgccatctctgttctgtactttgatgacagctccaatgtcattttgaaaaaatat agaaatatggtagtacgctcatgtggctgccactaa >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_8|128_aa MTVSLIARCLMVWKSRGGNGSGSSQLTIYDSTSKICASDSQDIGLCWSRALSSQWYNANS SVHGNSSIKLEVETATRPLRLLMPVNQEANHLLQLLYILSKGVCGIHGEAYQSPLQATHI IKVGTPKA >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_8|387_bp atgactgtttctctcatagccagatgtctcatggtctggaaatcaaggggtggaaatgga agtggttcctctcaactcactatctatgattcaactagcaaaatctgtgcttctgactcc caagacattgggctatgttggtccagagctcttagttcccaatggtacaatgctaactct agtgtccatggcaatagttctattaaattggaagttgaaacagctacccggccacttcga ctcctcatgccagtgaatcaagaagccaatcacctccttcagcttctctacatcctaagc aaaggagtttgtggaattcatggtgaagcataccaatctcccctgcaggccacgcacatc attaaagttggaactccaaaggcatga >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_9|302_aa MISLYYVRIQGEDDPLQTRRTALTRLLIFEYLNLGLPASRTVRTSYQAAKFLGQDQYLIL YVSQYFITISSIKLARTEITPLQDNKHAGPVTSLALARRPRPFSPGKQASSAPLFMLDLY NAMTNEENPEESEYSVRASLAEETRGARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASL HDTNFLNDADMVMSFVNLVERDKDFSHQRRHYKEFRFDLTQIPHGEAVTAAEFRIYKDRS NNRFENETIKISIYQIIKEYTNRAFLQELLKLQPGAQGQNSDLPGPDPLVGGVVTVSKDQ QT >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_9|909_bp atgatctctctctactatgtgaggatacaaggagaagatgaccctttgcaaaccaggagg acagcactcaccagactcctcatctttgagtacctcaatcttggacttcctgcttccaga actgtgagaactagttatcaagctgctaaattcctgggccaggaccagtatcttattctt tatgtatcacagtattttataacaatttctagcattaaactggctaggacagaaataaca ccccttcaggataataagcacgcaggacccgttacctctctagcactggccagaagaccc agaccattttcacctggaaaacaagcgtcctctgcacctctctttatgctggatctctac aatgccatgaccaatgaagaaaatcctgaagagtcggagtactcagtaagggcatccttg gcagaagagaccagaggggcaagaaagggatacccagcctctcccaatgggtatcctcgt cgcatacagttatctcggacgactcctctgaccacccagagtcctcctctagccagcctc catgataccaactttctgaatgatgctgacatggtcatgagctttgtcaacttagttgaa agagacaaggatttttctcaccagcgaaggcattacaaagaatttcgatttgatcttacc caaattcctcatggagaggcagtgacagcagctgaattccggatatacaaggaccggagc aacaaccgatttgaaaatgaaacaattaagattagcatatatcaaatcatcaaggaatac acaaatagggccttcctgcaggagcttctaaaactccaaccaggtgctcagggacagaac tctgatctccctggacctgatcccctagtgggaggggtggtcacagtctccaaagaccag cagacttag >gi568815592r:55655536_55974865|GENSCAN_predicted_peptide_10|293_aa XFFRTKDKGLNHPARGKSSPAEGGRRSGEGVEEFAFQIDSGDADAAGLRIRLIYIHRKIG HQKLSLQGSTGPLSSRKPLGNGLTVIPCEVSIARLLSDVQVCPELFLPSGGFVVSLASGA KRQTFAVNVTALKAVHLECSLLLSGIVHSSCECHHPMEDSMDMAMSPLRPQNYLFGCELK AGKDDHFKVDNGENDYQLSLRMLRRKMQNQEVEDNVKLLTISGKQSSPGGGSSLPQKKVK LDAAEDDDDDNEDDDFDDEETEEKDSVKKSVEDIPAKNAQKSNQNGRTQNHQS >gi568815592r:55655536_55974865|GENSCAN_predicted_CDS_10|882_bp ngcttcttcagaacaaaggataaaggtttaaatcaccccgccagaggaaaatcttcacca gctgaaggtggccgaagatcaggggagggggtagaagaatttgcatttcaaatagattca ggtgatgctgatgctgctggtctgaggatcagactgatctacattcatagaaaaattgga caccagaagctgtccttgcaaggctctactggccctttgtcatccaggaagcctttaggc aatggcttgactgtcattccttgtgaagtctcaattgccagacttctgagtgacgtgcaa gtgtgtccagaattgtttcttccttctggtgggttcgtggtctctctggcttcaggagcg aagcggcagaccttcgcagtgaatgttacagctcttaaggcggtgcatctggagtgttcg ttactgctgtctggaattgttcattcctcttgtgagtgccaccaccccatggaagattca atggacatggcaatgagccccctgaggcctcagaattatctttttggttgtgaactaaag gccggcaaagatgatcactttaaggtggataatggtgaaaatgattaccagttatcttta agaatgctgaggaggaagatgcagaatcaggaagtggaggacaatgtaaaactcctaact atatctggaaagcaatcttcccctggaggtggtagcagccttccacagaaaaaagtaaaa cttgatgctgctgaagatgatgatgatgataatgaagatgatgattttgatgatgaggaa actgaagaaaaagattcagtgaagaaatctgtagaagatattccagccaaaaatgcacaa aagtcaaatcagaatggaaggactcaaaaccatcaaagctaa