GENSCAN 1.0	Date run:  5-Nov-116	Time: 21:28:42

Sequence gi568815592r:10298420_10510336 : 211917 bp : 44.99% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 Intr -  19605  19456  150  1  0  103   84    62 0.184   7.43
 1.04 Intr -  23719  23640   80  0  2   63   86    27 0.031  -0.81
 1.03 Intr -  31589  31501   89  2  2   48   75    71 0.097   0.57
 1.02 Intr -  32155  32072   84  1  0   66  109    41 0.419   4.02
 1.01 Init -  40156  40136   21  1  0   60  101    70 0.194   3.40
 1.00 Prom -  48498  48459   40                              -3.36

 2.02 PlyA -  48630  48625    6                               1.05
 2.01 Sngl -  67450  67103  348  1  0   58   43   246 0.783  13.14
 2.00 Prom -  82834  82795   40                              -2.36

 3.10 PlyA -  84761  84756    6                               1.05
 3.09 Term -  89746  89587  160  0  1   58   48    85 0.099  -1.09
 3.08 Intr - 100286 100002  285  1  0   89   59   527 0.219  46.36
 3.07 Intr - 102170 102029  142  0  1   82   78    93 0.987   7.11
 3.06 Intr - 104191 104073  119  0  2   60   98    27 0.963   1.01
 3.05 Intr - 106320 106089  232  1  1  101   78   303 0.999  27.43
 3.04 Intr - 108425 108374   52  2  1   75  121    26 0.643   3.08
 3.03 Intr - 111916 111482  435  1  0  127  111   446 0.999  44.58
 3.02 Intr - 116650 116522  129  1  0   80   99    69 0.031   8.09
 3.01 Init - 120118 120029   90  1  0   93   76    75 0.028   7.29
 3.00 Prom - 139217 139178   40                              -3.26

 4.00 Prom + 139844 139883   40                              -1.26
 4.01 Init + 141068 141127   60  1  0   63   81    15 0.316  -0.45
 4.02 Intr + 148164 148215   52  2  1   92  100    32 0.492   3.28
 4.03 Intr + 148562 148703  142  0  1   41   56    50 0.426  -3.49
 4.04 Intr + 152479 152561   83  1  2  107   91    63 0.793   7.78
 4.05 Term + 153484 153497   14  2  2  105   53     2 0.293  -3.24
 4.06 PlyA + 154194 154199    6                               1.05

 5.06 PlyA - 154248 154243    6                               1.05
 5.05 Term - 162146 161487  660  2  0   37   37   468 0.018  30.51
 5.04 Intr - 167910 167808  103  2  1   75   64    60 0.009   2.48
 5.03 Intr - 173616 173454  163  1  1   71   53    78 0.799   1.63
 5.02 Intr - 176174 176081   94  2  1  104   98    63 0.925   8.44
 5.01 Init - 177988 177950   39  1  0   32  119     6 0.239  -1.69
 5.00 Prom - 180038 179999   40                              -4.26

 6.00 Prom + 180616 180655   40                              -6.16
 6.01 Init + 181071 181208  138  2  0   66   83     6 0.086  -1.96
 6.02 Intr + 184430 184640  211  1  1   35   52   164 0.351   5.99
 6.03 Intr + 193330 193397   68  2  2   50  111    54 0.853   2.52
 6.04 Term + 195918 196313  396  2  0   78   36   151 0.756   3.98
 6.05 PlyA + 197545 197550    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 162137 161487  651  2  0   86   37   445 0.912  35.38
S.002 Term - 172311 172182  130  2  1   85   29   108 0.865   2.25


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_1|142_aa
MKPLTLALSHYGEQCISECSLGALKGNLDSEALKQYVRDIYDHHSHRTGEEMGDMEGVNM
LNCRATSEISPEGLFPDQVPTCGKEARSRFLGHMAMRGKQAGTKVISTACDVCYDTGSIG
FDGSAEKTHLTGVRNRCLGMGX

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_1|426_bp
atgaagccgctgaccctcgcgctttcccattatggggagcagtgcatttctgaatgttct
ctgggggctcttaaagggaacttagatagtgaagccttaaaacagtatgtcagggacatc
tatgaccaccattcccatcgtacaggtgaagaaatgggggacatggaaggtgtcaatatg
ctcaactgtagagcgacaagtgagatttctccagaaggcctcttcccagatcaggttccc
acttgtggaaaagaagctagaagcagattcctggggcacatggccatgcgagggaagcag
gcaggcacaaaagtaatttcaacagcctgtgacgtgtgctatgacacaggcagcataggc
tttgacgggagtgcagaaaagacgcatctcacaggtgtcaggaacaggtgtctggggatg
ggggnn

>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_2|115_aa
MLHIVEPYVTRGFPNVKFVRDLILKCRQATVKNKAIPLTDNTVIEEYLGKFGVICLEELI
HEIALSGKYFQEILWFLHPFHLLVACPLPRIEWASSGRWAYLAIRVNASISSSTS

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_2|348_bp
atgctgcatatagtggaaccttatgtgacccggggatttccaaatgtgaagtttgtccgg
gatctcattctgaaatgtcgacaagccacagtcaagaataaggccatccctctgacagac
aacacagtgattgaggagtacctggggaaatttggtgtcatttgcttggaagagctcatt
catgaaattgccttgtccgggaagtatttccaggagatcttatggttcttgcaccctttc
cacctcttggtggcctgtccactgccaagaatagaatgggcttcctcagggagatgggct
tacctggctatcagggtgaatgcatcaatcagctcatccaccagctga

>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_3|547_aa
MVAVKGSACRRFHHQNREALFSPQPRGLVRPALCAHPESSSTWVRDREGHIRSRRSMKML
WKLTDNIKYEDCEDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPY
QPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLD
PRRDYRRHEDLLHGPHALSSGLGDLSIHSLPHAIEEVPHVEDPGINIPDQTVIKKGPVSL
SKSNSNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPE
CLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLAR
DFGYVCETEFPAKAVAEFLNRQHSDPNEQVTRKNMLLATKQICKEFTDLLAQDRSPLGNS
RPNPILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHT
DNNAKSSDKEEKHRNQLNGSTQDNGSKKGNYFHGISGSMGVLSLNLEDVASSQNDLGDSH
EVQRLGH

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_3|1644_bp
atggtggcggtaaaaggctctgcctgtcgccgatttcatcatcagaaccgcgaggccctg
ttttcgccccaaccaagaggcctggtgaggccagcactttgcgctcacccagagagtagc
tccacttgggtgcgagaccgagaggggcatatccgttcacgccgatccatgaaaatgctt
tggaaattgacggataatatcaagtacgaggactgcgaggaccgtcacgacggcaccagc
aacgggacggcacggttgccccagctgggcactgtaggtcaatctccctacacgagcgcc
ccgccgctgtcccacacccccaatgccgacttccagcccccatacttccccccaccctac
cagcctatctacccccagtcgcaagatccttactcccacgtcaacgacccctacagcctg
aaccccctgcacgcccagccgcagccgcagcacccaggctggcccggccagaggcagagc
caggagtctgggctcctgcacacgcaccgggggctgcctcaccagctgtcgggcctggat
cctcgcagggactacaggcggcacgaggacctcctgcacggcccacacgcgctcagctca
ggactcggagacctctcgatccactccttacctcacgccatcgaggaggtcccgcatgta
gaagacccgggtattaacatcccagatcaaactgtaattaagaaaggccccgtgtccctg
tccaagtccaacagcaatgccgtctccgccatccctattaacaaggacaacctcttcggc
ggcgtggtgaaccccaacgaagtcttctgttcagttccgggtcgcctctcgctcctcagc
tccacctcgaagtacaaggtcacggtggcggaagtgcagcggcggctctcaccacccgag
tgtctcaacgcgtcgctgctgggcggagtgctccggagggcgaagtctaaaaatggagga
agatctttaagagaaaaactggacaaaataggattaaatctgcctgcagggagacgtaaa
gctgccaacgttaccctgctcacatcactagtagagggagaagctgtccacctagccagg
gactttgggtacgtgtgcgaaaccgaatttcctgccaaagcagtagctgaatttctcaac
cgacaacattccgatcccaatgagcaagtgacaagaaaaaacatgctcctggctacaaaa
cagatatgcaaagagttcaccgacctgctggctcaggaccgatctcccctggggaactca
cggcccaaccccatcctggagcccggcatccagagctgcttgacccacttcaacctcatc
tcccacggcttcggcagccccgcggtgtgtgccgcggtcacggccctgcagaactatctc
accgaggccctcaaggccatggacaaaatgtacctcagcaacaaccccaacagccacacg
gacaacaacgccaaaagcagtgacaaagaggagaagcacagaaaccagttgaatggaagc
acccaagataatggttccaaaaagggtaactatttccatggaatatcagggagcatgggc
gtgttgagtcttaaccttgaggatgttgcttcaagtcagaatgatcttggagattcccat
gaagttcagagactgggacactga

>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_4|116_aa
MSCVHYDHWEDEFHPSHDYMLDWVIERDYVLGIVLKEVLKAGKSKINTSADSVSDEGLFP
SSQTAIFSLCPHMVEGARELSAVSLTWVPTLNTEVAFAQLVSKTARAYFAYIGLLC

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_4|351_bp
atgagctgtgttcattatgaccactgggaagatgagtttcacccttcacatgactatatg
cttgactgggtcattgagagagactatgttctgggcattgtattgaaagaagttctgaag
gctgggaagtccaagatcaatacctcagctgactcagtgtctgatgagggcctgtttccc
agttcacagacagccatcttctccctgtgtcctcacatggtggaaggggcaagggagctc
tctgcagtctctctgacctgggtccctacgctgaacactgaggtggcttttgctcagcta
gtctccaagacagcacgagcctattttgcctatattggtctgctgtgctga

>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_5|352_aa
MFSLSLPVEHKYLSSNIELVVQWKEYYQDPDAAQGKKKTKGDTHRHQSMMQVWLNRCLHI
GLVLSKPVAPILQGYPAVEGGPGGQDTMWGKQPWGAEPRIEPKPAGKAEAQLWSSQVQCR
RAKGVCAGGREAALEAMQQQRMSRTLEKVLCLRNNTTFKQGFSLLRLRTSAEKPIYSVGG
ILLSTSRPYKTKPTHAIGKYKHLIKAEEPEKKQKVEVKLINLGTDDEYGVLNIHLPAYDM
TLAESYAQYVHNFCNSLSIKVEESYVMPTKTTEVLWLQDQGSKTFLDSVLTTHERVVHIS
SLSATFAEIFLEIIQSSLPEGVRLSLKEHTEEDFKGRFKARPELEERLAKLN

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_5|1059_bp
atgttttctctgagccttcctgtggagcataaatatctgagttcaaacattgaattagtt
gtgcaatggaaggagtattaccaggacccagatgcagcccaaggaaaaaagaaaacaaaa
ggagacacacacagacaccagagcatgatgcaagtgtggcttaatcggtgcttgcacatt
gggcttgttctttccaaacctgttgccccgattctgcaaggctatcctgctgtagaagga
ggccctggaggacaagacaccatgtggggaaaacagccatggggagcagaaccgagaata
gaacccaagccagccggcaaggcagaagcgcagctgtggagctcccaggtgcaatgtcgc
agagcaaagggagtgtgcgctgggggccgagaagcagcactagaggccatgcagcagcaa
aggatgagcagaaccttggaaaaagtgctgtgcctgaggaacaataccacttttaagcaa
ggcttttcactcttaaggcttagaacttcagcagagaagcccatctattctgtaggtggc
attctactaagtactagtcggccctacaagacaaagcccacccacgccattggaaagtac
aagcacctaattaaagcagaagagcccgagaagaagcaaaaagtggaagtgaaactcatt
aatttggggacagatgatgaatatggggttttaaacattcacctgcctgcatatgacatg
accctggcagagagttatgcccagtatgttcacaacttctgcaactctctctccattaaa
gtcgaggaaagttatgtgatgccaaccaaaaccactgaagtgttgtggttgcaggaccaa
ggcagcaaaacgttcctggactcagtgcttaccacccatgagcgagtggttcacatcagc
agtttgagtgctacgtttgcagagattttcttggaaataatccaaagcagtcttcctgaa
ggagtcagattgtcgttgaaggagcacactgaagaagacttcaagggaagattcaaagct
cgaccagaactggaagaacggttggccaagttgaactag

>gi568815592r:10298420_10510336|GENSCAN_predicted_peptide_6|270_aa
MLQNLNFLSTNTMPQVEYSTCENPNTNCFITDLKCYIKLPSGYVYKVPSPAPREVAEARR
EFERGESGPAVLGDPAPPLQLLAWVLNPSLPGAGSADGPSQCGTRARWELALARERRKKL
PLGCQSARIGCCKVPQRLPVWAAYPRILALPLCPNRNQRFEKVWQKVFERSPGHFFATFS
GGSIYLTIDVKSKKSSADICVSKAKRLGLAPRDSVVPAGPASSAESVRTGRLWSCCADSD
VEKACSRGSACFHKERKKVASRITVPLAVK

>gi568815592r:10298420_10510336|GENSCAN_predicted_CDS_6|813_bp
atgctccaaaatctgaactttttgagcaccaacacgatgccacaagtagaatattccaca
tgtgagaaccctaatacaaactgtttcatcacagatttaaaatgttatataaaattaccc
tcaggctatgtgtataaggtcccaagccctgccccgcgggaggtggctgaagcccggaga
gaattcgagcgcggcgagagcgggccagcggtgctgggggacccggcgccccctctgcag
ctgctggcctgggtgctaaacccctcactgcctggggccggcagcgctgacggcccctcc
cagtgcggaacccgcgcccgctgggaactcgcactggcccgcgagcgccggaaaaagctc
cctctgggctgccagagtgcccgaattgggtgctgcaaagtgccccagcgcctgccggtc
tgggcagcctaccccagaatcttggctctccctctctgcccgaatcgaaatcagagattt
gaaaaagtctggcaaaaggtttttgaaaggtcaccaggccatttctttgctacctttagt
ggtggtagcatttatcttaccatagacgtcaagtcaaaaaaaagttccgcagacatttgc
gtcagtaaagcaaagagactgggcctggctccgcgggactcagtggtgcccgctggccct
gccagctctgctgagtctgtgaggactggaaggctttggagctgctgcgccgactccgac
gtggaaaaagcatgtagtcggggcagcgcctgtttccacaaggaacgcaaaaaggtggcg
tcaaggattacggtcccccttgcagtaaagtaa