GENSCAN 1.0	Date run:  8-Nov-116	Time: 13:29:18

Sequence gi568815592f:54208551_54489922 : 281372 bp : 35.65% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  22164  22367  204  2  0  111  100    50 0.490   6.97
 1.02 Intr +  42436  42520   85  0  1   95   80    25 0.336   0.87
 1.03 Term +  56213  56307   95  0  2  111   52    50 0.223   0.71
 1.04 PlyA +  57258  57263    6                               1.05

 2.00 Prom +  72174  72213   40                              -3.65
 2.01 Init +  86526  86958  433  2  1   54   61   236 0.073  13.99
 2.02 Intr + 100047 100355  309  1  0   78  102   172 0.220  12.96
 2.03 Intr + 118248 118366  119  1  2   34   98    64 0.043   1.26
 2.04 Intr + 120023 120152  130  1  1   67   73    68 0.084   2.55
 2.05 Intr + 138817 138967  151  2  1   63   34   166 0.536   7.00
 2.06 Intr + 141166 141346  181  1  1   87  111   104 0.616  11.55
 2.07 Intr + 142058 142133   76  1  1   67   98    66 0.734   3.67
 2.08 Intr + 145963 146086  124  2  1   47   82    99 0.406   3.92
 2.09 Intr + 154255 154422  168  1  0    6   70   142 0.061   2.34
 2.10 Intr + 171381 171459   79  0  1   67   70    36 0.011  -1.67
 2.11 Term + 181241 181375  135  1  0  116   38   174 0.917  12.24
 2.12 PlyA + 181564 181569    6                               1.05

 3.05 PlyA - 182665 182660    6                               1.05
 3.04 Term - 191414 191305  110  0  2   28   54   130 0.439   1.29
 3.03 Intr - 199304 197733 1572  0  0   55   60   351 0.296  17.06
 3.02 Intr - 200394 199455  940  0  1    8   40   445 0.820  21.51
 3.01 Init - 205568 205554   15  2  0   71   91     7 0.146  -0.29
 3.00 Prom - 212419 212380   40                              -3.75

 4.00 Prom + 217038 217077   40                              -7.35
 4.01 Init + 218857 218863    7  0  1   66   93     0 0.069  -0.51
 4.02 Intr + 220993 221080   88  2  1  115   70    46 0.023   3.61
 4.03 Intr + 232549 232774  226  1  1   79   32   103 0.003   0.86
 4.04 Intr + 235448 235538   91  1  1  121   57    73 0.025   6.15
 4.05 Term + 249975 250609  635  1  2   46   50   181 0.002   3.56
 4.06 PlyA + 250628 250633    6                               1.05

 5.00 Prom + 251389 251428   40                              -3.65
 5.01 Init + 253912 253986   75  0  0   87   75    62 0.802   5.94
 5.02 Term + 257469 257486   18  2  0  133   41    18 0.749  -1.06
 5.03 PlyA + 257693 257698    6                               1.05

 6.00 Prom + 259674 259713   40                              -4.05
 6.01 Init + 262001 262104  104  1  2   83   56    80 0.775   4.06
 6.02 Term + 272299 272407  109  1  1   92   50   100 0.268   3.60
 6.03 PlyA + 273212 273217    6                               1.05

 7.02 PlyA - 273330 273325    6                               1.05
 7.01 Term - 277298 276794  505  1  1  -40   42   672 0.593  42.73

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_1|127_aa
DVTVPPKPVSLHPLYQTKLYPPAKSLLHPQTLSHADCLAPGPFSHLSFSLSDEQENSHTL
LSHNACNKTVVFKAGDNVCSLIVISLTSSQVPDLLAGLQRIPDDESYSLLLTFCLLIFYG
QNKPEQS

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_1|384_bp
gatgtaacagtccctcccaagcctgtctcgctccatcctttatatcagactaaactctat
cctcctgctaagtcactgctgcatccacagaccctctcacatgctgactgtcttgcccca
ggacccttcagtcatctgtccttctccttgagtgatgaacaggagaattctcacaccctc
ctcagtcacaacgcatgcaacaagactgtagtcttcaaggcaggtgacaacgtctgttca
ctgattgttatatccttaacatctagccaagtgcctgacctattagcagggcttcagaga
attccagatgatgaaagctacagcttacttcttactttttgcctgttgattttctatggc
cagaacaaaccagagcagtcatga

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_2|634_aa
MLFHTCQQQQQQQRGGLLTHLLGQSLAGSAGAILHAGIHRGIGGSIGRQGCWHPCVHLHQ
QQCQCKTWVIGGLHACIHPNGGGGGAELRGWAVAVHLHVCTGSNGGTGWRRASGLRVCAC
IHAGNGSKAGREQGVLMVAVVALQEIWMEKQYLSQREVDLEAYFTRNHTVLQGTRFKRAI
FQGQYCRNFGCCEDRDDGCVTEFYAANALCYCDKFCDRENSDCCPDYKSFCREEKEWPPH
TQPWYPEGRWTAQNYSQFWGMTLEDGFKFRLGTLPPSPMLLSMNEMTDHNSLQASEQNWT
ENEFDELSEVGFRRWIITNSSELREHVLTECVAADRIAIQSKGRYTANLSPQNLISCCAK
NRHGCNSGSIDRAWWYLRKRGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATKPCP
NNVEKSNRIYQCSPPYRVSSNLGDNSSDANGYQAFPSRMPSKCQGPAIMQVREDFFHYKT
GIYRHVTSTNKESEKYRKLQTHAVKLTGSLEEVDSSPQGLLWVDFETLVEKETADVVEIE
KQLELEVEPEVLTEFLQFYFIKESPRPPNRPQCVMVPSLCPCVLIVQLSLIAANSWGKSW
GENGYFRILRGVNESDIEKLIIAAWGQLTSSDEP

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_2|1905_bp
atgctctttcacacgtgccagcagcagcagcagcagcagcggggtgggctgctcactcac
ctgctagggcagagcctagctggttcagcgggcgccatcctccatgctggtattcacaga
ggcattggtggcagcataggaaggcagggctgctggcatccatgtgtgcatttgcaccag
cagcagtgtcagtgcaaaacatgggtcattggtggcctccatgcatgcattcaccccaat
ggtggtggtggtggtgcagagttgaggggctgggctgttgctgtccatttgcatgtctgc
actggcagcaatggtggtacagggtggcgacgggcctctggtctccgtgtgtgtgcatgc
attcatgctggtaatggcagcaaggctgggagagaacaaggtgtgctcatggtggcagta
gtggcattgcaagaaatctggatggagaagcagtatttatctcaaagagaagtggaccta
gaggcttatttcactaggaatcacaccgttttgcaaggtactcgattcaaaagagccatt
ttccaagggcaatactgtagaaattttggctgttgtgaagacagagatgatggctgtgtc
actgagttctatgcggcgaatgcgttgtgctactgtgataaattctgtgacagagaaaat
tctgattgctgtcctgactacaagtccttttgccgtgaagagaaagaatggcctcctcac
acacagccttggtatccagaaggcagatggacagcacagaattacagccaattttgggga
atgactttagaagatggttttaaatttcgccttggcactttgccacctagtcccatgctc
ctgagcatgaatgaaatgacagatcacaactccttgcaagcaagtgaacaaaattggaca
gagaatgagtttgatgaattgtcagaagtaggcttcagaaggtggataataacaaactcc
tccgagctaagggagcatgttctaactgaatgtgtggctgctgaccgaatagcaattcag
tctaagggtcgatacacggccaatctatcccctcagaatttgatctcttgctgtgccaag
aaccgtcatggatgcaatagtggaagcatcgatagggcttggtggtacctgagaaaacgt
ggactggtatcccacgcatgctacccacttttcaaagaccaaaatgctaccaacaatgga
tgtgccatggcaagcaggtctgatgggcgaggaaaacggcatgccacgaagccatgtccc
aacaacgtagaaaaatctaacaggatctatcaatgttctcctccatacagagtctcttcc
aacctaggtgataattcctctgatgcaaatggttatcaagcctttccatctagaatgcca
agcaaatgtcaaggcccagccataatgcaagtccgtgaagatttcttccattataagaca
gggatatacagacatgttaccagcacaaataaagaatcagaaaaatatcgaaagcttcag
acacatgcagtcaaactcactgggagtttggaagaagttgattccagtcctcagggatta
ctgtgggtggatttcgagactttagtggagaaagaaactgcagatgtggtggaaatagaa
aaacaactagaattagaagtagagcctgaagttttgactgaatttctgcaattttatttt
ataaaggaaagcccccgacccccaaacaggccccagtgtgtgatggtcccttccctgtgc
ccatgtgttctcattgttcaactctcacttattgctgccaattcctggggaaagtcatgg
ggagagaatggctatttcaggattcttcgaggagtaaatgagtccgacattgaaaagttg
attatcgcagcttggggccaactgacgagttctgatgaaccataa

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_3|878_aa
MKLNMHSIRSKIDTLTSQLKELEKREQTHSKASRRQEITKIRAELKDIKTQKTLQKINES
RSWFFERINKIDRPLARLIKKKREKNQIDSIKNDKGDITTDPTEIQTTIREYYKHLYANK
LENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSETVAIINSLPTKKSPGPDGFTAEFYQ
RYKEELVPFLLKLFQSIDKERILPNSFYEATIILIPKPGRDTTKEENFTPISLMNIDAKI
LNKILVNRIQQHIQKLIHHDQVGFIPGMQGWFNIHKSINVIQHINRTKDKNHMIISIDAE
KAFDKIQLPFMLKTLNKLVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPI
VSAQNLLKLISNFSKVSGYKINVQKSQAFLYINNRQTESQIMSELPFTIASKIVKYLGIQ
LSRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRSSIVKMAILPKVMYRFNAIPIKL
PMTFFIELEKTTLKFIWNQKRARIAKSILSQKNKAGGIMLPDFKLYYKATVTKTAWYWYQ
NRDIDQWNRTEPSEIIPHIYNHLIFEKPDKNKQWGKDSLFNKWCWEKWLAICRKLKLDPF
LTPYAKINSRWIKDLNVRAKTIKTLDENLGLTIQDIGMGKDFMSKTPKAMATKAKVDKWD
LIKLKSFSTAKETTIRVNRQHTEWENIFATYLSDKGLISRICNELKQIYKKKTNNPIKKW
AKHMNRHFSKEDIYAAKKHMKKCSPSLAIREMQIKTAMRYHLTPVRMAIIKKSGKNRCWR
GCGEIGTLLHCWLDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDT
CTRILMFGSENVDADLTQDDFEGELLALKPPAGCDCRE

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_3|2637_bp
atgaaactcaatatgcattcaataagatccaaaattgacaccctaacatcacaattaaaa
gaactagaaaagcgagagcaaacacattcaaaagctagcagaaggcaagaaataactaaa
atcagagcagaactgaaggatataaagacacaaaaaacccttcaaaaaattaatgaatcc
aggagctggttttttgaaaggatcaacaaaattgataggccgctagcaagactaataaag
aagaaaagagagaagaatcaaatagactcaataaaaaatgataaaggggatatcaccacc
gatcccacagaaatacaaactaccatcagagaatactacaaacacctctatgcaaataaa
ctagaaaatctagaagaaatggataaattcctcgacacatacaccctcccaagactaaac
caggaagaagttgaatctctgaatagaccaataacaggctctgaaactgtggcaataatc
aatagcttaccaaccaaaaagagtccaggaccagatggattcacagctgaattctaccag
aggtacaaggaggaactggtaccattccttctgaaactattccaatcaatagataaagag
agaatcctccctaactcattttatgaggccaccatcatcctgataccaaagcctggcaga
gacacaaccaaagaagagaattttacaccaatatccttgatgaacattgatgcaaaaatc
ctcaataaaatactggtaaaccgaatccagcagcacatccaaaagcttatccaccatgat
caagtgggcttcatccctgggatgcaaggctggttcaatatacacaaatcaataaatgta
atccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaa
aaggcctttgacaaaattcaactacccttcatgctaaaaactctcaataaattagtgttg
gaagtcctggccagggcaattaggcaggagaaggaaatcaagggtattcaattaggaaaa
gaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatt
gtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaa
atcaatgtacaaaaatcacaagcattcttatacatcaataacagacaaacagagagccaa
atcatgagtgaactcccattcacaattgcttcaaagatagtaaaatacctaggaatccaa
ctttcaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaata
aaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaagcagtatc
gtgaaaatggccatactgcccaaggtaatgtatagattcaatgccatccccatcaagcta
ccaatgactttcttcatagaattggaaaaaactactttaaagttcatatggaaccaaaaa
agagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgcta
cctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaa
aacagagatatagaccaatggaacagaacagagccctcagaaataataccacatatctac
aaccatctgatctttgaaaaacctgacaaaaacaagcaatggggaaaagattccctattt
aataaatggtgctgggaaaagtggctagccatatgtagaaagctgaaactggatcccttc
cttacaccttatgcaaaaattaattcaagatggattaaagacttaaacgttagagctaaa
accataaaaaccctagatgaaaacttaggactaaccattcaggacataggcatgggcaag
gacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaagttgacaaatgggat
ctaattaaactaaagagcttctccacagcaaaagaaactaccatcagagtgaacaggcaa
catacagaatgggagaacatttttgcaacctacttatctgacaaagggctaatatccaga
atttgcaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgg
gcgaagcacatgaacagacacttctcaaaagaagacatctatgcagccaaaaaacacatg
aaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccgcaatgagatac
catctcacaccagttagaatggcgatcattaaaaagtcaggaaaaaacaggtgctggaga
ggatgtggagaaataggaacacttttacactgttggttggactgtaaactagttcaaccc
ttgtggaagtcagtgtggagattcctcagggatctagaactggaaataccatttgaccca
gccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacaca
tgcacacgcatcctgatgtttggttcagaaaatgtggacgctgacctcacacaggatgac
tttgagggagagctgcttgctcttaagccacctgcaggatgtgattgtagggagtga

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_4|348_aa
MHCEMSASSCSLTVLELHQLDLNNYQRHMHQRPKGSELPSGPRHIPRCYPRALKSACGEY
CLAWSSLFRAVGSLLAQGGPKMLPKIQVLKSGTPRTHLVLYSPVAVLDGVKAQMLFMDKE
QISRLATADSLAQNTYSAQNLLKLISNFRKASGYKINVQKSQAFLYTNNRQTESQIMSEL
PFKIFSKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNRWKNIPCSWIGRINIMKMAI
LPKVIYRFNAIPIKLPMTFFTELEKTILKFIWNQKRACTAKSILSQKNKAGSIMLPDFKL
YYKATVTKTAWYWYQNRDIDQWNRTEPSEIIPHIYNHLIFDKPEKNKQ

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_4|1047_bp
atgcactgtgagatgtctgcctcctcctgctcactcactgtgctagagctacaccagttg
gatctcaataactatcagcgtcacatgcaccaaaggcccaagggcagtgagctcccttct
ggcccacggcacatcccaagatgctacccaagggctctgaagtcagcttgtggtgaatac
tgtctggcctggagctcactcttcagggcagtgggctcccttctggcccagggaggtcca
aagatgctgcctaagattcaagtcctgaaatcagggaccccaagaacccacctggtgctc
tactcccctgtggctgtgctggatggggtgaaggctcagatgctcttcatggacaaggaa
caaatctccaggttggccactgctgattccttagctcagaatacatattcagcccaaaat
ctccttaagctgataagcaactttagaaaagcttcaggatacaaaatcaatgtgcaaaaa
tcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactc
ccattcaaaattttttcaaagagaataaaatacctaggaatccaacttacaagggatgtg
aaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaagaggacacaaac
agatggaagaacattccatgctcatggataggaagaatcaatatcatgaaaatggccata
ctgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttt
acagaattggaaaaaactattttaaagttcatatggaaccaaaaacgagcctgcactgct
aagtcaatcctaagccaaaagaacaaagctggaagcatcatgctacctgacttcaaacta
tactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagac
caatggaacagaactgagccctcagaaataataccacacatctacaaccatctgatcttt
gacaaacctgagaaaaacaagcaatag

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_5|30_aa
MGLSVGQTVIILVKCPLLDCLEAQQRFQSE

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_5|93_bp
atgggcctatcagttggacagacggtgataattctggttaagtgtcctcttctggactgc
ctggaagcacaacagcgctttcagtctgaataa

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_6|70_aa
MKHRSKGKKYMNNFNSQNAHAFENFSSFCQIYFALVCDGGVTRFFSAQLLKPLGELKDRQ
SVGLRSHSRF

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_6|213_bp
atgaaacatcgaagtaaaggaaagaagtacatgaataacttcaattctcagaatgcccat
gcatttgagaacttttcctctttctgccaaatctactttgcactggtatgtgatgggggt
gtgactcgcttcttcagtgcccagctgctcaaacctctaggggagcttaaggacaggcag
tctgtggggctccgatctcacagcaggttctag

>gi568815592f:54208551_54489922|GENSCAN_predicted_peptide_7|168_aa
XFLLPEPAEGHLQQQPDTKAVLNRKVLRTGTLYIAESHLSWLDSSGLGFSLEYPTISLLA
LSRDQSDCLGEHLYATVNDKFEESKESVADEEEEDSDDVELITEFIFVPSDKSALGAMFT
AMCECQALHPDPEDEDEDDYDGEEYDVEAHERGKGDIPKSYTYEGLSH

>gi568815592f:54208551_54489922|GENSCAN_predicted_CDS_7|507_bp
nntttcctgctacctgagccagcagaggggcacctgcagcagcagccagacaccaaggct
gtgctgaacaggaaggtcctccgcactggtaccctttatatcgctgagagccacctgtct
tggttagatagctctggattaggattctcactggaataccccaccattagtttacttgca
ttatccagggaccaaagtgactgtctaggagaacatttgtatgctacggtgaatgacaaa
tttgaagaatccaaagaatctgttgctgatgaagaagaggaagacagtgatgatgttgaa
cttattactgaatttatatttgtacctagtgataaatcagcactgggggcaatgttcact
gcaatgtgtgaatgccaggccttgcatccagatcctgaggatgaggatgaggatgactac
gatggagaagaatatgatgtggaagcacatgaacgaggaaaaggggacatccctaaatct
tacacctatgaaggattatcccattaa