GENSCAN 1.0 Date run: 6-Nov-116 Time: 16:49:53 Sequence gi568815592f:45322577_45647302 : 324726 bp : 39.76% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 22359 22391 33 2 0 85 105 43 0.735 4.31 1.02 Intr + 64864 64960 97 0 1 42 81 58 0.014 -0.84 1.03 Intr + 72300 72358 59 1 2 125 83 38 0.046 4.68 1.04 Term + 97619 97756 138 1 0 74 49 168 0.950 8.48 1.05 PlyA + 97864 97869 6 1.05 2.00 Prom + 98317 98356 40 -2.65 2.01 Init + 100001 100381 381 1 0 46 116 754 0.948 70.92 2.02 Intr + 101575 101828 254 0 2 30 91 263 0.387 16.11 2.03 Intr + 103796 103841 46 2 1 5 97 17 0.274 -8.21 2.04 Intr + 109287 109443 157 2 1 92 92 207 0.522 20.16 2.05 Intr + 115371 115475 105 1 0 109 100 20 0.261 4.57 2.06 Intr + 116039 116121 83 0 2 64 74 11 0.028 -4.26 2.07 Intr + 126241 126357 117 0 0 107 96 44 0.146 6.84 2.08 Term + 138756 139124 369 2 0 68 49 238 0.967 11.56 2.09 PlyA + 139470 139475 6 1.05 3.00 Prom + 151007 151046 40 -6.65 3.01 Init + 151348 151404 57 0 0 113 44 64 0.529 5.89 3.02 Intr + 161278 161442 165 0 0 -2 111 109 0.552 3.44 3.03 Intr + 162385 162563 179 0 2 98 25 68 0.215 -0.70 3.04 Intr + 167748 167805 58 0 1 125 52 41 0.073 2.17 3.05 Intr + 168942 169041 100 2 1 81 -34 91 0.079 -5.04 3.06 Intr + 169365 169538 174 1 0 81 110 72 0.405 7.69 3.07 Intr + 183037 183134 98 2 2 112 55 45 0.053 2.41 3.08 Intr + 183620 183698 79 1 1 102 65 20 0.151 -0.69 3.09 Intr + 189670 189831 162 2 0 98 103 134 0.890 14.93 3.10 Term + 224251 224729 479 2 2 93 44 295 0.974 19.62 3.11 PlyA + 226845 226850 6 1.05 4.08 PlyA - 226969 226964 6 1.05 4.07 Term - 234582 234467 116 1 2 106 49 59 0.377 1.55 4.06 Intr - 235759 235633 127 1 1 62 74 59 0.563 1.23 4.05 Intr - 235926 235808 119 1 2 61 116 78 0.767 7.16 4.04 Intr - 246954 246854 101 2 2 90 71 50 0.002 2.33 4.03 Intr - 250994 250803 192 1 0 27 113 240 0.032 18.09 4.02 Intr - 255810 255696 115 1 1 83 95 15 0.041 0.29 4.01 Init - 260500 260410 91 1 1 72 113 58 0.583 7.40 4.00 Prom - 264730 264691 40 -4.35 5.00 Prom + 272720 272759 40 -3.95 5.01 Init + 278550 278604 55 2 1 48 88 93 0.621 6.80 5.02 Term + 286855 287066 212 2 2 56 42 240 0.802 12.67 5.03 PlyA + 287809 287814 6 1.05 6.12 PlyA - 289303 289298 6 1.05 6.11 Term - 293265 293159 107 1 2 86 42 130 0.461 5.79 6.10 Intr - 294519 294353 167 2 2 61 38 52 0.539 -3.82 6.09 Intr - 295013 294922 92 2 2 90 65 31 0.586 -1.13 6.08 Intr - 295943 295770 174 2 0 89 45 122 0.695 7.21 6.07 Intr - 303265 303206 60 1 0 56 95 46 0.013 0.11 6.06 Intr - 306967 306821 147 1 0 60 44 108 0.042 3.11 6.05 Intr - 307714 307554 161 2 2 72 89 79 0.042 5.19 6.04 Intr - 318591 318476 116 2 2 45 87 56 0.046 0.37 6.03 Intr - 320105 319799 307 0 1 26 98 138 0.135 3.18 6.02 Intr - 321122 320951 172 2 1 30 77 123 0.281 3.99 6.01 Intr - 324125 323972 154 1 1 30 53 162 0.746 6.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term - 79448 79257 192 2 0 39 43 127 0.870 -0.26 S.002 Init - 81986 81789 198 2 0 2 98 152 0.913 6.55 S.003 Term + 207925 208080 156 0 0 57 55 167 0.941 7.25 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_1|108_aa MDYALKPSFILIRPRNILARICVGTAEAKGDNEMPETVHKTMRRSLRAFFPDLYPENLVG LLERGDPESRNHSPPSSSCTRKGSRVRDWHQAPIFRAPHALRALPGPF >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_1|327_bp atggactatgctctgaagccaagcttcattctgattcggcctagaaacattctcgcaaga atctgtgtgggcacagcggaagccaaaggagacaatgaaatgcccgagacagtgcataaa acaatgagaagaagcttgagagcatttttccctgatctttatcctgagaacctagtggga ctcctggagcggggcgatcccgagtcacgcaaccacagccccccaagctcatcttgtact cgaaagggctccagagtccgcgactggcaccaggcccccatcttccgtgcccctcatgct ctcagagcccttccaggccccttctag >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_2|503_aa MRIPVDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAA AAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNK TLPVAFKFEGGWQPRESQAGAPQVEVLGSGASHSSPMALHNPIQISRGSPLQGGDAEPPG PSAHWVDGETGSQAVHTRRTVHTRKTPGMQGCDKEVICKFSSLADGQVVALGEVPDGTVV TVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYH RAIKVTVDGPREPRNRVKPRLNPSWFICLSGHPEGFTGNQFQDWPRKLLVGKDGPFKEMM KVPNAGCSTRSEEKYRCVKRRKCSSVVKQQRYFDLVGKTRGTKYTEDVEGKGCIEAKKPA GKVLAQPQCDETQEIYMPFKVSINIMEKESAKGRNVLRWGNTHEMSLKSIDKNIKHLLCT IAVLGTSLGTLLSSVLSMDYKHA >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_2|1512_bp atgcgtattcccgtagatccgagcaccagccggcgcttcagccccccctccagcagcctg cagcccggcaaaatgagcgacgtgagcccggtggtggctgcgcaacagcagcagcaacag cagcagcagcaacagcagcagcagcagcagcaacagcagcagcagcagcaggaggcggcg gcggcggctgcggcggcggcggcggctgcggcggcggcagctgcagtgccccggttgcgg ccgccccacgacaaccgcaccatggtggagatcatcgccgaccacccggccgaactcgtc cgcaccgacagccccaacttcctgtgctcggtgctgccctcgcactggcgctgcaacaag accctgcccgtggccttcaagtttgagggcgggtggcagccgcgggagtcgcaggcaggt gctccgcaggttgaggttttaggatctggagcctctcacagtagcccgatggctctccat aacccgatccagatttcccggggtagccctctacaggggggagacgcggagcccccaggg cccagcgcacactgggttgatggggaaacgggttcccaggctgtccacactcgcaggact gtccacactcgcaagacgccagggatgcaggggtgtgacaaagaagtaatttgcaaattc agctcattagctgatggtcaggtggtagccctcggagaggtaccagatgggactgtggtt actgtcatggcgggtaacgatgaaaattattctgctgagctccggaatgcctctgctgtt atgaaaaaccaagtagcaaggttcaacgatctgagatttgtgggccggagtggacgaggc aagagtttcaccttgaccataaccgtcttcacaaatcctccccaagtagctacctatcac agagcaattaaagttacagtagatggacctcgggaacccagaaatagagtcaaaccacgt ttaaatccatcttggtttatttgtctgtctggacatccagaaggtttcaccggcaatcag tttcaggattggcccaggaaattattagtaggcaaagatgggcccttcaaggagatgatg aaggtaccaaatgcaggttgttctacaagaagtgaggagaaatatagatgtgtaaaaaga aggaagtgctccagtgttgtgaagcaacagagatattttgatttggtggggaaaacaaga ggaaccaaatatacggaagacgtagaagggaagggatgtatagaggcaaagaagccagct ggaaaagtactcgcacaaccccagtgtgatgagacccaggaaatatatatgccatttaaa gtcagtatcaacatcatggagaaggaaagtgcaaaaggaaggaatgtcttaagatgggga aacactcatgaaatgagtctgaagtcaatcgacaagaatattaagcacctactatgtacc attgctgttcttggcactagtctgggcactcttctaagctctgttctaagcatggactac aaacatgcttaa >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_3|516_aa MVTRSWKEAGSAAAAPPLQTSVSRAQAGSSTVVAIGNESDNAYCDHIFQVLICWAQGALF NSIDNGRQLKGFEQGSLSQHSETVTSCGLSPRVLDQTLFNHILGDSKISSCLPSYPSLPV KSECMVDEAHGLPKSSPSVIADAQKLALAGNRVLCDIVANMHGLSELSEGISSIMKQANT PNTHLSWHRQKLDDSKPSLFSDRLSDLGRIPHPSMRVGVPPQNPRPSLNSAPSPFNPQGQ SQITGLHKGLSPFLPDERQLETEEPPLSQLAFLSTPWGPQEQPWSSALFSSLACSHFDQS HPVYPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAITDVPRRISGAS ELGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPP YPGSSQSQSGPFQTSSTPYLYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNP NLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_3|1551_bp atggtcaccaggtcctggaaagaagcaggctcagctgccgcagcaccgccacttcagacc agtgtgagtagagcacaagctgggagcagtacagttgtagccattggaaatgagagtgac aacgcatattgcgaccatattttccaggtccttatttgctgggctcagggggctctattt aattcaatagacaatggaagacaattgaaaggttttgagcagggatcattgtcacaacat tctgaaactgttacatcctgtggcttgagccctagagtattggaccagactttattcaat cacatacttggtgacagcaaaattagctcatgtctccccagttacccctctcttccagtg aagtctgaatgcatggtggatgaggctcatggactgccaaagtctagtccttctgttata gcagatgcccaaaaacttgcactggcaggaaatagggtgctttgtgacattgtggctaac atgcacggactctctgaactttcagaggggatttcctccatcatgaaacaagcaaacacc cccaatacacatctctcctggcacagacagaagcttgatgactctaaacctagtttgttc tctgaccgcctcagtgatttagggcgcattcctcatcccagtatgagagtaggtgtcccg cctcagaacccacggccctccctgaactctgcaccaagtccttttaatccacaaggacag agtcagattacaggtttacataaagggttgtctccatttttgcctgatgaaaggcaactt gagacagaggaaccacccctctcccaactagcatttttgagcaccccctggggcccgcag gagcagccctggtcctctgctttgttctcttctctcgcatgtagtcattttgatcaatca catcctgtctaccccaggcaggcacagtcttccccgccgtggtcctatgaccagtcttac ccctcctacctgagccagatgacgtccccgtccatccactctaccaccccgctgtcttcc acacggggcactgggcttcctgccatcaccgatgtgcctaggcgcatttcaggtgcttca gaactgggccctttttcagaccccaggcagttcccaagcatttcatccctcactgagagc cgcttctccaacccacgaatgcactatccagccacctttacttacaccccgccagtcacc tcaggcatgtccctcggtatgtccgccaccactcactaccacacctacctgccaccaccc taccccggctcttcccaaagccagagtggacccttccagaccagcagcactccatatctc tactatggcacttcgtcaggatcctatcagtttcccatggtgccggggggagaccggtct ccttccagaatgcttccgccatgcaccaccacctcgaatggcagcacgctattaaatcca aatttgcctaaccagaatgatggtgttgacgctgatggaagccacagcagttccccaact gttttgaattctagtggcagaatggatgaatctgtttggcgaccatattga >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_4|286_aa MNDQNAQIQSHHQVMESAFPAHERKKSEAQGTQTRPALKLLCLRCSRLSFHRKPVRSHGI SRLPLYSHCNSQGPMMKLPSEAQVCLARTQEDHGSMPMRMAAKSEAFYDLDSWLREGAYR NGEKSENFAEAARPLECPDLTQHFALKISEGFKGSSLDSIQTMFLLGFCTPTQSLAQIRG STSDVRELGSAPLSDCKEDPRAIHRKLDEANAAKLSAIITFSVTLFTQNTTYLHGKPWKR LQIEDWDGGLGSKAPRNDWKTTLCRPLPQGTPALQEGPSGQHLEVA >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_4|861_bp atgaatgatcagaatgcccaaatccagagtcatcatcaagtgatggagtcagcatttcct gcacatgagagaaaaaaatctgaagctcaaggtactcagacacgaccagccctgaagctt ttgtgcctgcgctgctccagacttagcttccacaggaagcccgtccgttcccatggcatt agccgacttccactctactctcactgcaatagccagggccccatgatgaagctgccatca gaagcacaggtgtgcctggcaaggacacaggaggaccacggctccatgccgatgagaatg gcagctaagtctgaagctttctatgatttagattcctggttgcgagagggagcctatagg aatggcgagaagagtgagaactttgcagaggcagcaaggcctcttgaatgccctgacctc acccagcactttgctctgaagatctctgagggcttcaaaggctcctctttggattcaata caaacgatgttccttctgggcttctgcacaccaacacaaagccttgcccagatcaggggt tccacttcagatgtgagggaactgggtagtgcccctttgtcagattgcaaggaggacccc agagccattcatagaaagttagatgaagccaatgctgccaaattaagtgcaataataaca ttttcagtgacattgttcacacaaaacacaacatacctacatggaaaaccttggaagaga ctacagattgaggattgggatgggggccttggaagcaaagcccccaggaatgactggaag acaacactctgcagaccccttccacagggtacccctgctctccaggaagggccttcaggg cagcatttggaggtggcatga >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_5|88_aa MTPENNLNPREVTKDTGKAPIEGVSAGPWDAVLSHSACRMEFFWQARAVDLVQHQDFLEQ ALSGGQEPLVRSSPGTICEMLGMSPLWG >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_5|267_bp atgacaccagagaataacttgaatccacgtgaagtaacaaaggacactggaaaagctcct attgaaggtgtcagtgctggaccctgggatgcagtcctgagccatagtgcctgcaggatg gaattcttctggcaggcccgggctgtggacctagtacaacaccaggacttcctggaacag gcactgagtggaggtcaagagcccttggttcgttcctcccctggcacaatttgtgagatg ttaggcatgtcccctctctggggctaa >gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_6|552_aa XDRVSPEEEGALTLALWPRTGTKQLLPSPHHPHPRILSRGPTSLLPTDRKNPSNQNKGWR TGGRRRGRRREQNGDTPASSPLSESMVMASAAAYRHSEAGSQHNQIEAKGLGGEWLLVVS PFFLVGRRSSQGRKLGHHKSGPAARPGGQRGSAVGGHAGGGPGRTLRRSICMCEQHFDIW PRKDKFSKPPFMDPTHRSSTQKKNCFPIGLESDCCCFPYTVADAVRMNCLWVTARSYEQT TGPVLTLRRQSTLPICWKTAELVLWLFQILQDFFLQLLWVLNQACAQFYGEGHLLLQTNC FVKVWFSFLDQILTDTGHLTTYVITGSPNRMGPQPGVYPVEAYKACKMASVVSVLWALVC LKDPRLLNTVPLLVCPELTQTPHSHTELTLTKLPQAPKATGLLVFQQPWSSGTIILLVSY LQSINLMQVAKPAQSRRGKPRATDWRKRDESWDMRAGRDFRRSWNNGCTLQEVGFRVNVS RTFHGLHLKGIGLPRQVSGRAEHLGRDKKEGTWASKLGHDQYWSVAQGLGIHDLDHTESR LYLLALDFTLEL >gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_6|1659_bp nnggacagagtgtccccagaggaggagggagcactgacgctggctctctggccccgcaca gggactaaacagctactgccatccccacaccaccctcatccaagaattctcagtcggggt cccacttctctgctccccacagaccggaagaacccaagtaaccagaacaagggttggagg actggtgggagaaggcgaggaaggaggagggaacagaatggggacactcctgcctcttca cccctctctgagtcaatggtcatggccagtgctgctgcttataggcactctgaagctggt tcccagcataatcaaatagaagccaaaggactcggtggagaatggctgctggtggtctcc cccttcttcctggtgggtcggcgttcatcccagggaagaaaactgggtcatcacaagtct ggccctgcggcccgaccaggcggccagcgtggaagcgcagtgggcggccacgcgggcggc ggcccgggccgcaccttgaggcggtcaatctgtatgtgtgagcagcactttgatatctgg ccacgaaaggacaagttctcaaagcccccattcatggaccctacacacaggagcagcaca cagaaaaaaaattgtttccccatcggtctagaaagcgactgctgttgttttccatacaca gttgcagacgcggtcaggatgaattgcctgtgggtgacagccaggtcctatgagcagact acagggccagtcctgaccctccgccgacaaagtacactgcccatctgctggaagacagca gagctggtcctgtggctctttcagatcctacaagatttcttccttcagctcctctgggtc ctgaaccaggcatgtgcccagttctatggagaaggacacctgcttctgcaaaccaactgc tttgtcaaggtgtggttcagctttcttgatcaaattctaactgacacagggcatttgact acttatgtgatcacaggatctccaaacagaatgggtccccaaccaggagtctaccccgtg gaagcctacaaggcatgtaaaatggcatccgtggtttcagttctctgggctcttgtctgt ctaaaagacccacgacttctcaacacagtgcctttgctggtatgccctgagcttacccaa acccctcattcccacactgagctaactcttaccaagctcccacaagcaccaaaggctact ggcctactggtctttcagcagccatggagctctggaacaattatcctgcttgtatcttat cttcagtccataaatttaatgcaagttgcaaagccagcccaatccaggagagggaagcct agggccactgactggagaaagagggatgaatcatgggatatgagggctggaagggacttc agaagatcttggaataatggctgtacattacaggaagtggggtttagggtcaacgtgagc aggaccttccatggactacacctgaaaggaattgggctgccacggcaggtatcaggcaga gctgaacacttgggcagagacaaaaaggaggggacatgggcatccaaattaggccatgac caatactggtccgtggcccagggcttagggattcatgacctagaccacactgagagtcgg ctgtacctgctagctcttgacttcactcttgaactctga