GENSCAN 1.0	Date run:  7-Nov-116	Time: 03:26:45

Sequence gi568815592f:159806956_160007930 : 200975 bp : 44.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1785   1861   77  1  2   92   84   103 0.371   9.53
 1.02 Intr +   2060   2203  144  1  0   93   97    22 0.876   4.08
 1.03 Intr +   3071   3140   70  1  1   24   91    40 0.977  -3.35
 1.04 Intr +   4746   4831   86  1  2  115   90    75 0.983   9.94
 1.05 Intr +   6646   6701   56  0  2   49   94    26 0.720  -2.92
 1.06 Intr +   7245   7330   86  0  2  119   23    65 0.503   2.56
 1.07 Intr +  11345  11468  124  0  1   57   42    98 0.804   1.74
 1.08 Intr +  11600  11699  100  2  1   88   78    92 0.886   8.31
 1.09 Intr +  11991  12166  176  2  2   83   33   140 0.894   6.74
 1.10 Intr +  12299  12397   99  2  0   65  100   220 0.940  20.13
 1.11 Intr +  15552  15801  250  0  1  103  -29   142 0.378   1.44
 1.12 Intr +  16503  16670  168  2  0   83   94     9 0.207   1.14
 1.13 Intr +  19107  19262  156  2  0   52   40    99 0.353   1.71
 1.14 Term +  23570  23629   60  1  0  104   55    26 0.192  -1.30
 1.15 PlyA +  24104  24109    6                              -0.45

 2.03 PlyA -  25500  25495    6                               1.05
 2.02 Term -  29651  29464  188  0  2   72   48    88 0.163   0.85
 2.01 Init -  41018  40910  109  2  1   86   85    92 0.473   9.08
 2.00 Prom -  49123  49084   40                              -5.06

 3.07 PlyA -  50003  49998    6                               1.05
 3.06 Term -  51606  51488  119  1  2   46   50   150 0.977   5.70
 3.05 Intr -  52050  51990   61  0  1   91   95    51 0.732   4.41
 3.04 Intr -  64640  64550   91  1  1  109   90   -17 0.074   0.60
 3.03 Intr -  79832  79754   79  0  1   85   49   150 0.152   9.41
 3.02 Intr -  81732  81575  158  2  2    5   55   136 0.606   1.65
 3.01 Init -  82984  82617  368  1  2   53   43   138 0.631   2.30
 3.00 Prom -  93579  93540   40                              -4.86

 4.00 Prom +  96751  96790   40                              -5.66
 4.01 Sngl + 100001 100978  978  1  0   54   48   994 0.998  88.79
 4.02 PlyA + 101108 101113    6                              -1.75

 5.00 Prom + 103695 103734   40                              -3.86
 5.01 Init + 109070 109077    8  1  2  101   92     6 0.133   2.36
 5.02 Intr + 109698 109780   83  0  2   73   89    41 0.147   1.98
 5.03 Intr + 111320 111425  106  0  1   97  107    19 0.228   3.97
 5.04 Intr + 111841 111929   89  1  2  113   83    34 0.186   5.01
 5.05 Intr + 112575 112816  242  1  2  103   54    56 0.007   0.97
 5.06 Intr + 125741 125906  166  1  1   68   70    73 0.111   3.03
 5.07 Intr + 129004 129122  119  2  2   96   72    60 0.381   5.38
 5.08 Intr + 134698 134794   97  0  1   74   77    57 0.284   2.78
 5.09 Intr + 135735 135831   97  1  1   56  110    40 0.222   2.07
 5.10 Intr + 139281 139476  196  0  1  117   51    19 0.147   0.52
 5.11 Intr + 144625 144767  143  0  2   49   49    88 0.139   0.15
 5.12 Term + 145136 145298  163  2  1  111   43    60 0.155   1.21
 5.13 PlyA + 147722 147727    6                               1.05

 6.00 Prom + 154265 154304   40                              -3.46
 6.01 Init + 162292 162440  149  0  2  103   94   246 0.969  24.26
 6.02 Intr + 184229 184368  140  2  2  102  106    74 0.795  10.71
 6.03 Term + 191010 191068   59  1  2   81   54    34 0.079  -2.85
 6.04 PlyA + 191877 191882    6                               1.05

 7.00 Prom + 193584 193623   40                              -0.96
 7.01 Init + 197383 197457   75  0  0   96   66    70 0.445   4.94
 7.02 Term + 198628 198648   21  0  0  104   55    16 0.310  -1.79
 7.03 PlyA + 199820 199825    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_1|550_aa
XFQAFEVQLVLRQALPNIWTVLKDEGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSAR
GFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSV
TKDIWKEMNFPRVSNLSEVYEVLNRGTQSRQSVPSQQDEAREAFGTGMAPCSGLGPSPNH
HQQMVTVWKLFFYVATENAFRLASWGSTQPEPQDFIDPVPESSFPQYLDVLAPYVNQVNL
IRAGVPKINFSGPDYPSIRPPILILSVKRWPGVSEQQVYHKFQNLCKFDVRRLTRSQFLL
LTNKFKDARNILKEYRDHPTLCISLYRYWRHSPNVNCLLQLSSTCFPSFSPLLPGAQPVI
RAPWLPSHSSMALGGAAPLDALPKSLVTLFSIALNSSPGPLDVGVQGPGTIRRDSAGPQH
DSESTWCCVAVSPGLALHRWAVEFWNLQGPSVSSQASAPHGWRLCCVFRQGFEFVAAAQF
LAVYPEGVTRMLLVVVDERQEPALGPGGLQTLVLSCASSRRLEPSALLCPLEEPDSNICL
LAIVFLRKTL

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_1|1653_bp
ngcttccaggcctttgaggtccaactggtgctgaggcaggccctccccaacatctggacg
gtgctgaaagatgagggggtggtagtgaagaaagtgagtaaacaacatcgttggtatctt
cagaacacctcttgtgaccgagagagctgttggaaggaaaatattcttctctcagcaagg
ggtttttctgtctttttccaaatgctggtgaaagcccagaagcccttagtgggacataat
atgatgatggacctgctgcacctccatgagaagttcttcagacccctcccagaaagctac
gatcaatttaagcagaatatccacagcctatttcctgttctcattgataccaagagtgta
acaaaggatatctggaaggagatgaatttcccgagggtgtcgaatctttcggaagtctat
gaagtcctgaacaggggcacccagagccgccagtctgtccccagtcagcaggacgaggca
cgagaggcgtttggaacagggatggcaccctgttctggattgggaccctcaccaaaccat
caccagcagatggtgactgtctggaagctcttcttctatgtggccacggagaatgctttt
agacttgccagctggggaagcacccaaccagagccccaagacttcatcgaccccgtgccc
gagtcatcctttcctcagtaccttgacgtgctggctccttacgtgaaccaagtgaacctc
atccgagcgggggtcccaaagatcaatttttctggtccagattatcccagtatccgacct
cccatcctcatcctcagcgtcaaaaggtggcctggggtcagcgagcagcaagtctaccat
aagtttcagaatctctgcaagtttgatgtcaggcgactcacaagaagccagttcttactc
ctgaccaataagtttaaggatgcgcggaacatcctgaaggagtaccgggaccacccgacc
ctgtgcatctccctgtaccgctactggaggcactccccaaacgtcaactgcctgctccag
ctttcgagcacgtgctttccatcgttctcgcccctgctgcccggggcccagccagtcatt
agggctccctggcttccctctcactcctccatggccctgggtggtgcagctcctctggac
gctctccccaagtctctggtcactctcttctcgattgccctcaactcttcccctggccct
ttagatgttggtgttcaaggacctggcaccatccgccgtgacagtgccgggccccagcat
gactctgaaagcacttggtgctgtgtggcagtgtcccctggcctggccctgcacaggtgg
gcagtggagttctggaacctgcaggggccctcagtatcctcacaagccagtgctccccat
ggctggaggctctgctgtgtttttcgacagggatttgagtttgttgctgctgctcagttt
ttggcggtttaccctgagggggttacgaggatgctgctggtggtggtggacgagaggcag
gagccggcgctggggccgggtggtctgcagactctcgtcctctcctgcgcctcctcacgt
cggttagagccatcggccctcctctgtcccctggaagaaccagattcaaacatttgcctg
ctggcaatagtgtttctgaggaagacactgtga

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_2|98_aa
MVESKEEQVPSYTDGSRQRENEEDTKAETPVKTIRSAPRRPWAFQPWPPPRGCSSTYLFL
DGKRLLIIVHFSTHDFPHKLGSIQEALLGICHAKFSAL

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_2|297_bp
atggtggaaagcaaggaggagcaagtcccatcttacacggatggcagcaggcaaagagag
aatgaggaagatacaaaagcagaaacccctgttaaaaccatcagatctgctcctcggaga
ccctgggccttccagccctggcctcccccgcgcggctgctcgagcacgtatctcttcttg
gatggaaaacggctccttatcatcgtgcatttttctacccatgacttccctcacaaactg
ggcagcatccaggaggctctgctggggatatgccatgccaagttttcagcattgtga

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_3|291_aa
MKFPSDCFRKQEDHSPRAEPNYSCGKPDQQLGPPSGKKKGERRELPLKPAGIYWVGSAEQ
QINRPGELGLEVGKVFSLPGSDAPRKEKFSLLKNFSFPEDGQKLKRKQAPSKADCKAEKK
EHGSLEKQHPSFCHQTTENHNEGGLVEGLMGAGKKEAYLPTATQQTHKWQYAQVVGTSLE
KVRIESQVKMYEHFVDDSLDPTYQRPWYFGPNSSEPASRACTGLVAGSVPLKTGYRKEPM
ESSTQKAVKKSPGPEGQPAITTAIASATSTAQGPEGQLAMSTATTSAASTA

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_3|876_bp
atgaagttcccctccgactgttttcgtaagcaggaagaccatagtcccagggcagagcca
aactactcttgtgggaagcctgaccagcagctcggccctcccagtgggaagaagaaaggg
gagagaagagagcttcccctgaagccagcaggcatctactgggtaggcagtgctgagcag
caaatcaacagaccaggtgaactcggtcttgaagttggaaaggtgttctcattacctggt
tctgatgctccaaggaaggagaagttcagcctcctgaagaactttagtttcccagaggat
ggtcagaaactaaaaaggaaacaggcaccatctaaagcagactgcaaggcagaaaagaag
gagcacggttccctagagaaacaacatccctctttctgccatcaaacaacagagaaccat
aatgaagggggcctggtggagggccttatgggagcagggaagaaggaagcttatttaccc
acggccacgcagcagacccataagtggcagtacgcacaagtggtagggacatccctagag
aaagttcgcattgagtcacaggtgaaaatgtacgagcacttcgtggatgactcgctcgat
ccgacatatcaaagaccctggtattttgggccaaacagctctgagcctgcttccagggcc
tgcacaggccttgtcgctgggtctgtcccactgaagactggctacaggaaagaacccatg
gaatcctcaacacaaaaagcagtcaagaaaagcccagggcccgagggccagcctgccatc
actactgccattgccagtgccacaagcactgcccagggacctgagggccagcttgccatg
agcactgccaccaccagtgctgcaagcactgcctag

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_4|325_aa
MDGSNVTSFVVEEPTNISTGRNASVGNAHRQIPIVHWVIMSISPVGFVENGILLWFLCFR
MRRNPFTVYITHLSIADISLLFCIFILSIDYALDYELSSGHYYTIVTLSVTFLFGYNTGL
YLLTAISVERCLSVLYPIWYRCHRPKYQSALVCALLWALSCLVTTMEYVMCIDREEESHS
RNDCRAVIIFIAILSFLVFTPLMLVSSTILVVKIRKNTWASHSSKLYIVIMVTIIIFLIF
AMPMRLLYLLYYEYWSTFGNLHHISLLFSTINSSANPFIYFFVGSSKKKRFKESLKVVLT
RAFKDEMQPRRQKDNCNTVTVETVV

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_4|978_bp
atggatgggtcaaacgtgacatcatttgttgttgaggaacccacgaacatctcaactggc
aggaacgcctcagtcgggaatgcacatcggcaaatccccatcgtgcactgggtcattatg
agcatctccccagtggggtttgttgagaatgggattctcctctggttcctgtgcttccgg
atgagaagaaatcccttcactgtctacatcacccacctgtctatcgcagacatctcactg
ctcttctgtattttcatcttgtctatcgactatgctttagattatgagctttcttctggc
cattactacacaattgtcacattatcagtgacttttctgtttggctacaacacgggcctc
tatctgctgacggccattagtgtggagaggtgcctgtcagtcctttaccccatctggtac
cgatgccatcgccccaagtaccagtcggcattggtctgtgcccttctgtgggctctttct
tgcttggtgaccaccatggagtatgtcatgtgcatcgacagagaagaagagagtcactct
cggaatgactgccgagcagtcatcatctttatagccatcctgagcttcctggtcttcacg
cccctcatgctggtgtccagcaccatcttggtcgtgaagatccggaagaacacgtgggct
tcccattcctccaagctttacatagtcatcatggtcaccatcattatattcctcatcttc
gctatgcccatgagactcctttacctgctgtactatgagtattggtcgacctttgggaac
ctacaccacatttccctgctcttctccacaatcaacagtagcgccaaccctttcatttac
ttctttgtgggaagcagtaagaagaagagattcaaggagtccttaaaagttgttctgacc
agggctttcaaagatgaaatgcaacctcggcgccagaaagacaattgtaatacggtcaca
gttgagactgtcgtctaa

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_5|502_aa
MGSEWSTGTVASERQRHEANSTTHLKPVFANLLPSWYGLKACVLPDSYVEILTLHVTVFG
GGVLGRQEYGEERNEVITLGKWPVRPDEPMFFLSRGFNGRFCIQLHQHCLQTRKEPREWR
TLCRDLGMDSREYLEIPTSQVHLTWWLFLLKKDPVVLCPEGHKQHKCSRAEPGSGRIKIF
DMDMQEKGMLPGLPYQQPIRTTQWSGSSYDQMAWAAKSGVQKPQTPHHLMERLRLCILAE
AALSNGSLPAVPCHMGFFTMATYFMSDFSRPETGPTVLESLVAGAREMGITCRVTPFAKT
GRHDQFGQENREKRIRKTLAGHDDSDSADERSPGPSCSLGTKRHDGSCGPSESVPFLGAR
ASHPTNTESSWSSFIQTLGSVFHAQCSSGYEKMSLGSVWRESGEPLRDHWPPSYCSHVLA
ALIPAPCEASLKPIYQSMYLRTAATQPLRKFTSTSTFIFCSRGILEHLGPSGDGLESLEA
QAESTKTSGLSDNRPGILPNSS

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_5|1509_bp
atgggcagtgagtggagcactggcactgttgccagtgagaggcaaagacacgaggccaat
tcaacaacccacctcaaacctgtatttgcaaacctcctgcccagctggtatggcctgaaa
gcttgtgtactcccagattcatatgttgaaatcctaacccttcatgtgacggtatttgga
ggtggagttcttgggagacaagagtatggtgaagaacggaatgaagttataacgcttggg
aagtggcctgtgaggcctgatgagcccatgttctttctctcacgtggttttaatggaagg
ttctgcattcagctgcaccaacactgcttgcaaacaagaaaagaaccgagagagtggaga
acactgtgcagggacttgggtatggattccagggagtatctggaaattcccacctcacag
gtccatctcacctggtggttgttcctactgaaaaaggatcccgtggtcctgtgccctgag
ggccacaaacagcataaatgttccagagcagagcctggaagtgggaggataaagatattt
gacatggacatgcaggagaaagggatgctcccaggcctgccgtatcagcaaccaatcaga
actactcaatggagtggcagctcctatgaccagatggcctgggcagctaagtctggagtt
caaaaaccccagactccccatcacttgatggagaggttgaggctttgcattcttgctgaa
gctgctctcagcaatggcagtttgcctgcagttccttgccatatgggcttcttcaccatg
gccacttacttcatgtcagatttttcaaggccagagacaggacctactgtgttagagtct
ctggtggcaggtgctcgggagatgggcatcacctgtcgtgtaacaccctttgcaaagacc
gggagacatgaccagtttgggcaggaaaatagggaaaagagaatcagaaagaccctcgca
ggccatgatgatagtgatagcgcagacgagagatcacctggacccagctgctctcttggc
accaagagacatgatggcagctgtggccccagtgaaagcgttccttttctgggagccagg
gcctctcaccccacaaatacagaatcctcctggagttcattcatccaaactttaggaagt
gtgttccatgcacagtgctcttcaggctacgagaaaatgagcctgggttctgtttggcgg
gagtcgggagagccccttcgggaccactggcccccaagctactgtagccatgtccttgcc
gccctgatccccgcaccctgcgaagcttctctcaagcccatctaccagagcatgtacctc
aggactgctgctacccaaccactcaggaagtttacttccacaagcaccttcatcttctgt
tctagggggattttggagcatttggggccctcgggtgatggattggaaagtcttgaggca
caggctgagtcaactaaaaccagtggattgtcagacaacaggccaggcatcctccccaac
agcagctag

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_6|115_aa
MGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKN
NVLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVETIQTEKPGERDLRPGIEI

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_6|348_bp
atgggggccgccgccggccggagcccccacctggggcccgcgcccgcccgccgcccgcag
cgctctctgctcctgctgcagctgctgctgctcgtcgctgccccggggtccacgcaggcc
caggccgccccgttccccgagctgtgcagttatacatgggaagctgttgataccaaaaat
aatgtactttataaaatcaacatctgtggaagtgtggatattgtccagtgcgggccatca
agtgctgtttgtatgcacgacttgaagacacgcacttatcattcagtggagaccatccag
actgaaaaacctggtgagagggatttgaggcctgggattgagatctga

>gi568815592f:159806956_160007930|GENSCAN_predicted_peptide_7|31_aa
MGLLGLGGATWWACRMRLGGLTEQHDVTRTL

>gi568815592f:159806956_160007930|GENSCAN_predicted_CDS_7|96_bp
atgggcttgcttgggcttggaggtgcgacctggtgggcctgcagaatgcgacttggtggc
ctgactgagcagcacgacgtgacccgcacattatga