GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:15:05

Sequence gi568815591r:6064947_6290532 : 225586 bp : 45.70% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3870   3990  121  2  1   86   82    50 0.419   4.55
 1.02 Intr +  16215  16324  110  1  2   86   83    34 0.444   2.70
 1.03 Term +  16727  16870  144  1  0   -9   47   217 0.779   5.81
 1.04 PlyA +  16963  16968    6                               1.05

 2.03 PlyA -  18011  18006    6                               1.05
 2.02 Term -  27277  27011  267  1  0   24   42   395 0.910  23.99
 2.01 Init -  32356  32174  183  1  0   61   29   115 0.408   2.03
 2.00 Prom -  34722  34683   40                              -5.36

 3.00 Prom +  41550  41589   40                              -3.16
 3.01 Init +  46188  46428  241  2  1   71   79   104 0.683   5.84
 3.02 Intr +  50377  50577  201  2  0  105  103     9 0.405   3.36
 3.03 Intr +  70895  71005  111  0  0   67   88    36 0.182   1.85
 3.04 Intr +  74146  74248  103  2  1   69   97    73 0.654   5.53
 3.05 Intr +  75182  75249   68  2  2   79   99   -26 0.674  -3.85
 3.06 Intr +  75968  76038   71  0  2   64   94    19 0.893  -1.00
 3.07 Intr +  77986  78068   83  0  2  108   70   127 0.790  11.34
 3.08 Intr +  79139  79250  112  2  1   75   95    29 0.982   2.68
 3.09 Intr +  80570  80710  141  1  0  118   80   128 0.999  15.55
 3.10 Intr +  81202  81302  101  0  2   95   72    14 0.784  -0.59
 3.11 Intr +  82793  82946  154  2  1  141   87    32 0.934   8.47
 3.12 Intr +  84637  85356  720  0  0   84  113   498 0.945  43.53
 3.13 Intr +  85466  85560   95  1  2   88   82    40 0.997   2.16
 3.14 Intr +  88810  90249 1440  1  0   16   99  1543 0.998 136.93
 3.15 Intr +  91808  92109  302  2  2  106   90   122 0.934  10.58
 3.16 Term +  92276  92385  110  0  2   70   48    75 0.457   0.37
 3.17 PlyA +  99497  99502    6                               1.05

 4.18 PlyA - 100009 100004    6                               1.05
 4.17 Term - 100481 100323  159  2  0  129   48   183 0.414  16.34
 4.16 Intr - 100670 100599   72  2  0   92   79    65 0.978   5.60
 4.15 Intr - 100864 100788   77  2  2   72   98    85 0.948   7.13
 4.14 Intr - 103018 102891  128  0  2   56   89    30 0.701   0.22
 4.13 Intr - 103919 103835   85  0  1   63  105    47 0.821   2.78
 4.12 Intr - 105700 105589  112  1  1  124   80   223 0.993  25.05
 4.11 Intr - 106032 105884  149  1  2   58   84   393 0.670  35.85
 4.10 Intr - 106368 106256  113  2  2   98   82   110 0.998  11.42
 4.09 Intr - 108787 108707   81  0  0   89  115    64 0.994   7.95
 4.08 Intr - 112995 112877  119  0  2  105  113   134 0.985  16.86
 4.07 Intr - 122170 122104   67  0  1   17  116    52 0.422  -0.19
 4.06 Intr - 122775 122711   65  0  2   89   77    58 0.720   2.32
 4.05 Intr - 125585 125503   83  0  2   96   83   117 0.901  11.36
 4.04 Intr - 167323 167162  162  2  0   19  116    52 0.017   1.05
 4.03 Intr - 192846 192790   57  1  0   16   96    76 0.087   0.06
 4.02 Intr - 208087 207528  560  0  2   49  101   190 0.215   8.87
 4.01 Intr - 214213 214078  136  2  1   57   98   116 0.469   9.13

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:6064947_6290532|GENSCAN_predicted_peptide_1|124_aa
MEAKSKICRVDWQTRDPEKEESVLQFKSETCLPETFLLRADQSNSESGGSVFPRHPVYLR
FKMRESSVGASVQRLTESSDGGLRRSGERVIALLKADCAYVDCGFAPGRSSLLFTRKPKV
CVDP

>gi568815591r:6064947_6290532|GENSCAN_predicted_CDS_1|375_bp
atggaggctaaatccaaaatctgcagggtggactggcagactagagacccagagaaggaa
gagtcagtgttacagtttaagtcagaaacttgtctgccggaaactttcttgctcagggca
gatcagagtaactctgagtctggtgggagtgtcttcccccgacaccccgtatacctccgc
tttaagatgagagaatcttctgtcggtgctagcgttcagcggctaacggagtcttcggac
ggcggcctgcggaggtcgggtgagagggtgatcgcgctgctgaaagccgactgcgcctac
gtggactgcgggttcgctccgggccgctcctccctgctgttcacgaggaaacctaaagtc
tgtgttgacccatga

>gi568815591r:6064947_6290532|GENSCAN_predicted_peptide_2|149_aa
MLKCMLPAGDIPSQGLENTVLPGPRRAETASAVLEKWYPEVAVMYKPGLITGDAVTELGC
LPGRQSENLSQKKKKKEKKKKEEEEEEEEEEEEEGRGRRRRRGGRRRRGRGRRRRRRKKK
KKKKKKKKKKKKKKKKKKKKKKKKYVLED

>gi568815591r:6064947_6290532|GENSCAN_predicted_CDS_2|450_bp
atgctaaaatgcatgctaccagctggtgacattccatcacaaggcctggaaaacaccgtt
ttaccaggaccacggagggcagagacagcatcagctgtgttggaaaagtggtaccccgag
gtggctgtcatgtataagccagggctaataacaggagatgctgttacagaactgggctgt
ctgcctgggcgacaaagcgagaatctgtctcaaaaaaaaaaaaaaaaagagaagaagaag
aaagaagaagaagaagaggaagaggaagaagaagaagaagaaggaagaggaagaagaaga
agaagaggaggaagaagaagaagaggaagaggaagaagaagaagaagaagaaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaaaaaatacgtccttgaggactaa

>gi568815591r:6064947_6290532|GENSCAN_predicted_peptide_3|1350_aa
MTIVDKASESSDPSAYQNQPGSSEAVSPGDMDAGSASWGAVSSLNDVSNHTLSLGPVPGA
VVYSSSSVPDKSKPSPQKDQALGDGIAPPQKVLFPSEKICLKWQQTHRVGAGLQNLGNTC
FANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPGDVIKPMFVI
NEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRS
RVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPA
SKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVL
VHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIRSHDVKNGGE
LTHPTHSPGQSSPRPVISQRVVTNKQAAPGFIGPQLPSHMIKNPPHLNGTGPLKDTPSSS
MSSPNGNSSVNRASPVNASASVQNWSVNRSSVIPEHPKKQKITISIHNKLPVRQCQSQPN
LHSNSLENPTKPVPSSTITNSAVQSTSNASTMSVSSKVTKPIPRSESCSQPVMNGKSKLN
SSVLVPYGAESSEDSDEESKGLGKENGIGTIVSSHSPGQDAEDEEATPHELQEPMTLNGA
NSADSDSDPKENGLAPDGASCQGQPALHSENPFAKANGLPGKLMPAPLLSLPEDKILETF
RLSNKLKGSTDEMSAPGAERGPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTKKAPPPRD
PGTPATKEGAWEAMAVAPEEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIA
EGPRDSALAEAPEGLSPAPPARSEEPCEQPLLVHPSGDHARDAQDPSQSLGAPEAAERPP
APVLDMAPAGHPEGDAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRGHYRSRRERS
SSGEPARESRSKTEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHH
HSRHRSGVELDWVRHHYTEGERGWGREKFYPDRPRWDRCRYYHDRYALYAARDWKPFHGG
REHERAGLHERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDRFSHDRTALV
AGDNCNLSDRFHEHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEPKAKKHKKSKK
KKKSKDKHRDRDSRHQQDSDLSAACSDADLHRHKKKKKKKKRHSRKSEDFVKDSELHLPR
VTSLETVAQFRRAQGGFPLSGGPPLEGVGPFREKTKHLRMESRDDRCRLFEYGQVWFRCT
VKPLAFIEGLSDTGLRAALPVSPKPWNVQL

>gi568815591r:6064947_6290532|GENSCAN_predicted_CDS_3|4053_bp
atgaccatagttgacaaagcttctgaatcttcagacccatcagcctatcagaatcagcct
ggcagctccgaggcagtctcacctggagacatggatgcaggttctgccagctggggtgct
gtgtcttcattgaatgatgtgtcaaatcacacactttctttaggaccagtacctggtgct
gtagtttattcgagttcatctgtacctgataaatcaaaaccatcaccacaaaaggatcaa
gccctaggtgatggcatcgctcctccacagaaagttcttttcccatctgagaagatttgt
cttaagtggcaacaaactcatagagttggagctgggctccagaatttgggcaatacctgt
tttgccaatgcagcactgcagtgtttaacctacacaccacctcttgccaattacatgcta
tcacatgaacactccaaaacatgtcatgcagaaggcttttgtatgatgtgtacaatgcaa
gcacatattacccaggcactcagtaatcctggggacgttattaaaccaatgtttgtcatc
aatgagatgcggcgtatagctaggcacttccgttttggaaaccaagaagatgcccatgaa
ttccttcaatacactgttgatgctatgcagaaagcatgcttgaatggcagcaataaatta
gacagacacacccaggccaccactcttgtttgtcagatatttggaggatacctaagatct
agagtcaaatgtttaaattgcaagggcgtttcagatacttttgatccatatcttgatata
acattggagataaaggctgctcagagtgtcaacaaggcattggagcagtttgtgaagccg
gaacagcttgatggagaaaactcgtacaagtgcagcaagtgtaaaaagatggttccagct
tcaaagaggttcactatccatagatcctctaatgttcttacactttctctgaaacgtttt
gcaaattttaccggtggaaaaattgctaaggatgtgaaataccctgagtatcttgatatt
cggccatatatgtctcaacccaacggagagccaattgtctacgtcttgtatgcagtgctg
gtccacactggttttaattgccatgctggccattacttctgctacataaaagctagcaat
ggcctctggtatcaaatgaatgactccattgtatctaccagtgatattagatcggtactc
agccaacaagcctatgtgctcttttatatcaggtcccatgatgtgaaaaatggaggtgaa
cttactcatcccacccatagccccggccagtcctctccccgccccgtcatcagtcagcgg
gttgtcaccaacaaacaggctgcgccaggctttatcggaccacagcttccctctcacatg
ataaagaatccacctcacttaaatgggactggaccattgaaagacacgccaagcagttcc
atgtcgagtcctaacgggaattccagtgtcaacagggctagtcctgttaatgcttcagct
tctgtccaaaactggtcagttaataggtcctcagtgatcccagaacatcctaagaaacaa
aaaattacaatcagtattcacaacaagttgcctgttcgccagtgtcagtctcaacctaac
cttcatagtaattctttggagaaccctaccaagcccgttccctcttctaccattaccaat
tctgcagtacagtctacctcgaacgcatctacgatgtcagtttctagtaaagtaacaaaa
ccgatcccccgcagtgaatcctgctcccagcccgtgatgaatggcaaatccaagctgaac
tccagcgtgctggtgccctatggcgccgagtcctctgaggactctgacgaggagtcaaag
gggctgggcaaggagaatgggattggtacgattgtgagctcccactctcccggccaagat
gccgaagatgaggaggccactccgcacgagcttcaagaacccatgaccctaaacggtgct
aatagtgcagacagcgacagtgacccgaaagaaaacggcctagcgcctgatggtgccagc
tgccaaggccagcctgccctgcactcagaaaatccctttgctaaggcaaacggtcttcct
ggaaagttgatgcctgctcctttgctgtctctcccagaagacaaaatcttagagaccttc
aggcttagcaacaaactgaaaggctcgacggatgaaatgagtgcacctggagcagagagg
ggccctcccgaggaccgcgacgccgagcctcagcctggcagccccgccgccgaatccctg
gaggagccagatgcggccgccggcctcagcagcaccaagaaggctccgccgccccgcgat
cccggcacccccgctaccaaagaaggcgcctgggaggccatggccgtcgcccccgaggag
cctccgcccagcgccggcgaggacatcgtgggggacacagcaccccctgacctgtgtgat
cccgggagcttaacaggcgatgcgagcccgttgtcccaggacgcaaaggggatgatcgcg
gagggcccgcgggactcggcgttggcggaagccccggaagggttgagtccggctccgcct
gcgcggtcggaggagccctgcgagcagccactccttgttcaccccagcggggaccacgcc
cgggacgctcaggacccatcccagagcttgggcgcacccgaggccgcagagcggccgcca
gctcctgtgctggacatggccccggccggtcacccggaaggggacgctgagcctagcccc
ggcgagagggtcgaggacgccgcggcgccgaaagccccaggcccttccccagcgaaggag
aaaatcggcagcctcagaaaggtggaccgaggccactaccgcagccggagagagcgctcg
tccagcggggagcccgccagagagagcaggagcaagactgagggccaccgtcaccggcgg
cgccgcacctgcccccgggagcgcgaccgccaggaccgccacgccccggagcaccacccc
ggccacggcgacaggctcagccctggcgagcgccgctctctgggcaggtgcagtcaccac
cactcccgacaccggagcggggtggagctggactgggtcagacaccactacaccgagggc
gagcgtggctggggccgggagaagttctaccccgacaggccgcgctgggacaggtgccgg
tactaccatgacaggtacgccctgtacgctgcccgggactggaagcccttccacggcggc
cgcgagcacgagcgggccgggctgcacgagcggccgcacaaggaccacaaccggggccgt
aggggctgcgagccggcccgggagagggagcggcaccgccccagcagcccccgcgcaggc
gcgccccacgccctcgccccgcaccccgaccgcttctcccacgacagaactgcacttgta
gccggagacaactgtaacctctctgatcggtttcacgaacacgaaaatggaaagtcccgg
aaacggagacacgacagtgtggagaacagtgacagtcatgttgaaaagaaagcccggagg
agcgaacagaaggatcctctagaagagcctaaagcaaagaagcacaaaaaatcaaagaag
aaaaagaaatccaaagacaaacaccgagaccgcgactccaggcatcagcaggactcagac
ctctcagcagcgtgctctgacgctgacctccacagacacaaaaaaaagaagaagaaaaag
aagagacattcaagaaaatcagaggactttgttaaagattcagaactgcacttacccagg
gtcaccagcttggagactgtcgcccagttccggagagcccagggtggctttcctctctct
ggtggcccgcctctggaaggcgtcggacctttccgtgagaaaacgaaacacttacggatg
gaaagcagggatgacaggtgtcgtctctttgagtatggccaggtgtggttccgttgcaca
gttaagcccttagcgtttattgaaggcctaagtgacacaggactgagggcagcactacct
gtgtcaccaaagccctggaacgtacagctctag

>gi568815591r:6064947_6290532|GENSCAN_predicted_peptide_4|741_aa
XWQTDSFWLVNQKAGKIPTSVDNNDEYLLSAYCVLHTVYDSIRFSHLSKYWNTGVSHRAW
PGLTSECIRFLIFYPECTCKLHPWPLGFAECGVPVSGAPRPSAGYWNAEGEEASLHAHRI
GLHFRGQVYSLPQRRRRRPGRFPRAGLRGLTPRPPRAEAGHGSRDGTPTSEAPPGGRRPG
RDPGRALRSRPVACALPPAASPARGPSAAGPRLAGCGSGLKMDEDGGGEGGGAVYCNLEL
KASGVILAVAAGLLESGCGTPKIGEPISLLVCFNNQNCAYVWNEFKGGYAYQGLGIGNGS
SGRVKVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQR
NKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEF
NIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQS
TDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFIAMNRGINEGGDLPEELLRNLYESIKNE
PFKIPEDDGNDLTHTFFNPDREGWLLKLVSPRGTVTPSACLAANVTPATRERSALETPGL
QRPPGPEDWTGMGLCMGGVSGGPKVELRGHLADPSQAGPGGRVKTWKRRWFILTDNCLYY
FEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNH
VVYRISAPSPEEKEEWMKSIK

>gi568815591r:6064947_6290532|GENSCAN_predicted_CDS_4|2226_bp
ncttggcagacagattccttctggcttgtgaatcagaaggcgggaaaaattcctacttct
gtggataacaatgacgagtatttattgagtgcttattgtgtgctacacactgtatatgac
agcatccggttctcacacctctcaaagtattggaatacaggtgtgagccaccgagcctgg
ccaggcctgacttctgaatgcattcgtttcttgatcttttaccccgagtgcacgtgcaag
ttgcacccctggccactgggttttgcagagtgtggcgttccagtgtccggggccccacgc
ccgtccgcaggctactggaatgctgagggcgaggaggcttcgctccacgcacaccggatc
ggcctgcacttcaggggccaggtctacagccttccccagcgcagacgccgccggcccggc
cggttcccgagggcggggctgcgcggcctcacgccccgcccaccgcgggcagaggcgggg
catgggtcacgtgacggcacgccgaccagcgaggccccgcccggcgggaggaggcccggc
cgcgacccgggccgcgcgctgaggagccgcccggtcgcctgcgcgctccctccggcggcg
tccccagcccgcggcccctctgctgccggcccccggctcgccggctgcgggagtggcctc
aagatggatgaagacggcggcggcgagggtggtggcgcagtgtactgtaacttggagctc
aaggcatctggtgtgatactggctgtagcagcaggcctccttgaatctggctgtggtact
cccaagattggagaaccaattagcctgctggtttgtttcaataaccagaattgtgcatat
gtctggaatgagtttaagggtggttatgcttatcaaggattggggattggcaatgggtct
agtggaagggtaaaagtgcctgaagacctctcattagaagagagagaagaacttctagac
attcgtcgaagaaaaaaggaacttattgatgacattgagaggctgaaatatgaaattgca
gaggtgatgacagagatcgacaatctaacttccgtagaggagagcaaaacgactcagagg
aacaaacagatagccatgggaagaaagaaattcaacatggatcccaaaaagggaattcag
tttctaatagaaaatgacctgctacagagttccccagaagacgtcgcccagttcctttat
aaaggagaaggcctaaataagaccgtcattggggactacctgggtgaaagggatgaattt
aatattaaagttcttcaagcctttgttgaactccatgagtttgctgatctcaaccttgta
caagccttaaggcagttcttatggagcttcaggctgcccggggaggcgcagaagattgat
cgcatgatggaggctttcgcttctcgctactgcctgtgcaaccccggggtcttccagtcc
acagacacgtgctacgtgctgtcattcgccatcatcatgctcaacaccagcctccacaac
cacaacgtgcgtgacaagcccacggcagaacggttcatcgccatgaaccgcggcatcaac
gagggcggggacctccctgaggagctgctgaggaatttgtatgagagcattaagaacgag
ccatttaagatcccggaggacgacgggaacgacctgacccacaccttcttcaaccccgac
cgcgagggctggctcctgaagctggtgtcccctcgagggacagtgacgccatcagcctgc
ctggcagccaatgtgacccctgccaccagggaaaggtcggctctagagactcctggtctg
caacgaccccctggccctgaggactggacagggatggggctctgcatgggaggtgtgagc
gggggacccaaggtggagctgagaggccacctggcagacccctcccaggcggggccagga
gggcgtgtgaagacctggaagcgccggtggttcatcctgaccgataactgcctctattac
tttgaatacacaacagataaggagcccaggggaatcatcccgttggaaaacctcagcatc
agggaggtggaggacccccggaaacccaactgttttgagctctacaatcccagccacaaa
gggcaggtcatcaaggcctgtaagactgaggccgacggccgcgtggtagaggggaaccat
gtggtgtaccggatctcagccccgagcccggaggagaaggaggagtggatgaaatccatc
aagtga