GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:28:18

Sequence gi568815591f:44696725_44901419 : 204695 bp : 47.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    190    340  151  2  1   64   97   259 0.490  23.62
 1.02 Intr +    646    773  128  1  2   99   92   128 0.999  14.62
 1.03 Intr +    880   1058  179  2  2  118   89   302 0.999  32.94
 1.04 Intr +   1468   1539   72  0  0   92   81    73 0.984   6.60
 1.05 Intr +   3417   3545  129  2  0  105   77   269 0.999  28.39
 1.06 Intr +   4819   4891   73  0  1   76   94    43 0.933   2.68
 1.07 Intr +  10501  10664  164  2  2   43   94   200 0.979  15.79
 1.08 Intr +  10858  11012  155  0  2  102   95   311 0.999  32.07
 1.09 Term +  11155  11275  121  1  1  128   37   287 0.995  25.55
 1.10 PlyA +  11339  11344    6                              -3.84

 2.05 PlyA -  12260  12255    6                               1.05
 2.04 Term -  12644  12442  203  0  2   21   55   160 0.715   3.55
 2.03 Intr -  12981  12881  101  2  2   44   47    77 0.659  -1.05
 2.02 Intr -  14325  14169  157  1  1   89   69    88 0.862   6.07
 2.01 Init -  16585  16483  103  1  1   74  105    40 0.801   3.25
 2.00 Prom -  29687  29648   40                              -1.66

 3.00 Prom +  32672  32711   40                              -6.26
 3.01 Init +  52210  52267   58  0  1   57   83   109 0.201   6.77
 3.02 Intr +  59049  59148  100  1  1  131   50   -30 0.054  -3.33
 3.03 Intr +  59701  59815  115  1  1   95  115    12 0.960   5.05
 3.04 Intr +  60223  60425  203  0  2   89  102   253 0.939  24.88
 3.05 Intr +  60654  60837  184  0  1   54   89   147 0.471  11.19
 3.06 Intr +  61124  61384  261  1  0  130  105    40 0.608   7.58
 3.07 Intr +  62557  62736  180  0  0  105   97    50 0.989   7.66
 3.08 Intr +  63427  63504   78  0  0   79   37   135 0.846   7.25
 3.09 Intr +  63701  63869  169  1  1   77  119    97 0.994  11.22
 3.10 Intr +  64725  64869  145  1  1   78   83   175 0.964  15.34
 3.11 Intr +  64971  65181  211  0  1   48   28   380 0.485  26.92
 3.12 Intr +  66157  66262  106  0  1  105   70   114 0.934  11.09
 3.13 Intr +  66532  66689  158  2  2   37   96   217 0.994  17.13
 3.14 Intr +  67695  67762   68  2  2  107   89    59 0.948   5.60
 3.15 Intr +  68217  68285   69  0  0  129   74    94 0.999  10.40
 3.16 Intr +  68611  68855  245  1  2   77  110   395 0.998  37.74
 3.17 Intr +  69440  69609  170  0  2  108   82    69 0.974   7.97
 3.18 Intr +  69697  70006  310  0  1  130   96    54 0.653   6.29
 3.19 Term +  72731  73143  413  0  2   51   42   192 0.751   6.30
 3.20 PlyA +  73547  73552    6                               1.05

 4.00 Prom +  80846  80885   40                              -4.16
 4.01 Init +  98925  98973   49  2  1   69   80    63 0.523   2.72
 4.02 Intr +  99966 100124  159  1  0   40   47   173 0.437   8.36
 4.03 Intr + 102668 102756   89  0  2   61   96    46 0.944   2.39
 4.04 Intr + 102978 103150  173  2  2   70   79   196 0.999  15.64
 4.05 Term + 104563 104698  136  1  1   82   38   226 0.997  14.49
 4.06 PlyA + 104886 104891    6                               1.05

 5.00 Prom + 112650 112689   40                              -3.36
 5.01 Init + 125279 125334   56  1  2   32   86    54 0.162   0.36
 5.02 Intr + 126548 126651  104  2  2   94   63    40 0.253   1.92
 5.03 Intr + 149467 149547   81  2  0  104  119    10 0.038   5.31
 5.04 Term + 151211 151686  476  0  2   95   38   185 0.041   9.25
 5.05 PlyA + 152496 152501    6                               1.05

 6.02 PlyA - 152718 152713    6                               1.05
 6.01 Sngl - 188624 187686  939  2  0   76   47  2062 0.959 197.41
 6.00 Prom - 190831 190792   40                              -3.06

 7.03 PlyA - 191028 191023    6                               1.05
 7.02 Term - 191284 191227   58  0  1  100   46    67 0.193   0.86
 7.01 Init - 195915 195818   98  0  2   78   84    73 0.700   5.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 151246 151686  441  0  0   49   38   268 0.955  12.16


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_1|390_aa
XLSRILKTRGEMVKNRTVDWALAEYMAFGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQ
NVDKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNT
AQCIIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLK
EANFDINQLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFD
EMLPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQL
SPFPFDLLLKEVQKYPNAELAWCQEEHKNQGYYDYVKPRLRTTISRAKPVWYAGRDPAAA
PATGNKKTHLTELQRLLDTAFDLDVFKNFS

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_1|1173_bp
nggctgagccggatcttgaagactcgtggggaaatggtgaagaaccggactgtggactgg
gctctagcggagtacatggcgtttggctcgctcctgaaggagggcatccacattcggctg
agcggccaggacgtggagcggggcacattcagccaccgccaccatgtgctccatgaccag
aatgtggacaagagaacctgcatccccatgaaccatctctggcccaatcaggccccctat
actgtgtgcaacagctcactgtctgagtacggcgtgctgggctttgagctgggcttcgcc
atggccagtcctaatgccctggtcctctgggaagcccaatttggtgacttccacaacacg
gcccagtgtatcatcgaccagttcatctgcccgggacaagccaagtgggtgcggcagaat
ggcatcgtgttgctgctgccccatggcatggagggcatgggtccagaacattcctccgcc
cgcccagagcggttcttgcagatgtgcaacgatgacccagatgtcctgccagaccttaaa
gaagccaacttcgacatcaatcagctatatgactgcaattgggttgttgtcaactgctcc
actcctggcaacttcttccacgtgctacgacgccagatcctgctgccattccggaagccg
ttaattatcttcacccccaaatccctgttgcgccaccccgaggccagatccagctttgat
gagatgcttccaggaacccacttccagcgggtgatcccagaagatggccctgcagctcag
aacccagaaaatgtcaaaaggcttctcttctgcaccggcaaagtgtattatgacctcacc
cgggagcgcaaagcacgcgacatggtggggcaggtggccatcacaaggattgagcagctg
tcgccattcccctttgacctcctgctgaaggaggtgcagaagtaccccaatgctgagctg
gcctggtgccaggaggagcacaagaaccaaggctactatgactacgtgaagccaagactt
cggaccaccatcagccgcgccaagcccgtctggtatgccggccgggacccagcggctgct
ccagccaccggcaacaagaagacccacctgacggagctgcagcgcctcctggacacggcc
ttcgacctggacgtcttcaagaacttctcgtag

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_2|187_aa
MKGGHLVPLQVLFVQPGAPVGREDSPLSNQTAGEAITSSSTWVRGAGSEVPSPVEQADAL
TSSLDISDPEVPFLYPEKRKDVGSDVGTHSTWHWLVVMLPSEEPWAMLQSDNRTNPGTQA
GTLAQTERHRVQSTFSRWSQGKDPEQGKLRNRTAPKQPGSPGRLCRIHNDGFAGEGLQVV
VITPPVQ

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_2|564_bp
atgaaggggggccacctagttcctctccaggtcctctttgtgcagcctggagcaccagtg
gggagggaggacagccccctaagcaaccagactgctggggaagccatcaccagcagtagt
acttgggtgaggggggctggctctgaagttccctccccagtggagcaagctgacgctctc
acatctagcttagatatttcggatccagaagtaccttttttatatccagaaaagcgcaag
gatgttggcagtgatgttgggacccactccacttggcactggctggtggtcatgcttcca
tcagaagaaccttgggccatgctgcaaagcgacaacaggacaaatccggggacccaggca
ggcacgctggctcaaacggagaggcacagagtgcagagtactttttcaaggtggagccag
gggaaggacccagagcagggaaagctcagaaacaggactgcacccaaacagcccggcagc
ccaggccgcctctgccgcattcacaatgacggctttgccggcgagggcctgcaggtggtg
gtcatcactccccctgtccaatga

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_3|1080_aa
MERRGPGAATARGRARPGGGPSVGLLATGSSLNPSFHGVARIVPGFIRIARPRDGSFAYE
SVPWQQSATQPAGSLSVVTTVWGVGNATQSQVLGNPMGPAGSPSGSSMMPGVAGGSSALT
SPQCLGQQAFAEGGANKGYVQQGVYSRGGYPGAPGFTTGYAGGPGGLGLPSHAARPSTDF
TQAAAAAAVAAAAATATATATATVAALQEKQSQELSQYGAMGAGQSFNSQFLQHGGPRGP
SVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRLPQHGYPGPPQAQPLPRQG
VKRTYSEVYPGQQYLQGGQYAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQSLSVPG
PTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSV
PYMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQHNLAV
SNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIERGDNK
TSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLLPAEHC
ITKIKRNFSSGTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRHIQCFDL
ESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTCSWKPVP
VKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSVPAPSDY
PGQGSSFLGPGTFPESFPPTTPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKSTACLPSQ
MAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSNPPPASRQSLGQASLGPTGELAFSPA
TGVMGPPSMSGAGEAPEPALDVSTRPHAGECVGARARGGVSVPALPPSLDEGTEVEETKE
AAARTVLSLGAETAWQSPTQPWPDAGPRPSFLGCQMTVSWTSDAPPALPVANVMLPDGVE
KLGDWDKQKAANNPEAHPQKTGEMIEECMGTVALCSITNTSQKQRGMKKQDSSYSMMPFL

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_3|3243_bp
atggagcggcgcgggccgggggccgccacggcgaggggccgggccaggccgggcggaggg
ccttctgtggggttactggctactggctcctctctaaaccccagtttccacggggtagct
aggattgtccctggctttataaggatagccaggcctcgtgatggttcattcgcatatgag
tctgtgccttggcaacaaagcgccactcagccggctggatcgctgtctgtggtcactact
gtgtggggagttggcaacgcgacacagagccaggttttggggaaccccatgggccctgca
gggagtccctctggcagctccatgatgcctggtgtggcagggggcagctccgccttgacc
tccccacagtgcctgggacagcaggcgtttgctgaaggcggcgccaacaagggctacgtg
cagcaaggcgtgtacagccgcgggggctaccctggggcccccggcttcaccaccgggtat
gcaggcggcccggggggcctgggcctcccctcacatgctgcaagaccctccactgacttc
acgcaagcggcagctgctgcagctgtggctgctgcggcagccactgccaccgccacagcc
acagccaccgtggctgctctccaggagaagcagagccaggagctgagccagtatggagcg
atgggggccggacagtcttttaacagccagtttctgcagcatggaggtccccgggggcct
agtgtccccgctggcatgaaccctactggcataggaggggtaatgggcccctctggcctc
tcccccttggctatgaaccccacccgggcagcaggaatgacacccttgtatgcagggcag
cgtctgccccaacatgggtatcctgggcctccccaggcccagccactgccccgacagggg
gtcaagagaacctactctgaggtgtatccagggcagcagtatctgcaaggaggccagtat
gcacccagcaccgcccagtttgcgcccagccctgggcagccccctgccccctccccttcc
taccctgggcacaggctgcccctgcagcagggcatgacccagtccctgtccgtgcctggc
cccacgggactgcattataagcccacagagcagttcaacgggcagggcgccagcttcaac
gggggcagcgtcagctacagccaacctggcctgagtgggcctacccgttccatcccgggc
tatcccagttccccactgccagggaaccccacgccacccatgaccccaagcagcagcgtc
ccttacatgtcaccaaaccaagaggtcaagtctcccttcttgcctgatctcaagcccaac
ctcaactccttgcactcatcgccctctggaagcgggccttgtgacgagttgcggctgacc
ttccctgtgcgcgatggggtggtcctggagcccttccgcctgcagcacaacctggctgta
agcaaccatgtcttccagctgcgagactcagtctacaagaccctgataatgaggcctgac
ctggagctgcaattcaagtgctaccaccacgaggaccggcagatgaacaccaactggcca
gcctcggtgcaggtcagcgtcaatgccacgccgctcaccatcgagcgtggcgacaacaag
acctcgcacaagccactctacctgaagcatgtgtgccagccaggccgcaacaccatccag
atcaccgtcaccgcctgctgctgctcccacctcttcgtgctgcagctagtgcaccgccca
tccgtccgctcggtgctgcagggcctcctcaaaaagcgcctcctgcctgctgagcactgc
atcaccaagataaagcggaacttcagcagcggcaccatccctggcacccctgggcccaac
ggagaggacggggtggagcagacagctatcaaggtgtccctgaagtgccccatcaccttc
cgcaggatccagctccctgcccgaggtcatgactgtcgccacatacagtgctttgacctg
gagtcgtacctgcagctcaactgtgagcgggggacttggaggtgtcctgtgtgcaacaag
acagctttgctggagggcctggaggtggaccagtacatgctgggcatcctgatttacatt
cagaactctgactatgaggagatcaccatcgaccccacgtgcagctggaagccagtgccc
gtgaagcctgacatgcacatcaaggaggagccggatgggccagcactgaagcgctgccgc
accgtgagccccgcccacgtgctcatgcccagcgtgatggagatgatcgccgccctgggc
cccggcgctgccccctttgcccccctgcagcccccctcagtccctgcccccagcgactac
cctggccagggttccagcttcctggggcctggaactttccctgagtccttcccacccacc
acgcccagcaccccaacccttgctgagttcaccccgggaccaccccccatctcctaccag
tctgacattcccagcagcctcctgacttcagagaagtctaccgcctgcctcccaagccag
atggcaccagcaggtcacctggaccccactcacaatcctgggacaccaggactacacacc
tccaaccttggggcccctccaggtccccagctgcaccattcaaaccctcccccagcgtcc
cggcagtccttgggccaagcgagcttaggacctacgggtgaactggccttcagtcctgcc
acaggcgtgatggggccccccagcatgtctggagccggggaggccccagaaccagctctg
gacgtgagtaccaggccccatgcgggggagtgcgtgggagccagggctagaggtggtgtg
tctgttccagctcttccgccctctctggatgagggaacagaagtggaggaaacaaaagaa
gcagcagcacgcacagtcctgtcgctgggtgcggagacagcctggcaaagtcccactcag
ccatggcctgatgcaggccccaggccctcctttcttgggtgtcaaatgactgtgtcctgg
acatctgatgcaccacctgccctgcctgttgcaaacgtgatgctcccggatggagtggag
aaactaggagactgggacaagcaaaaggctgcaaacaacccagaagcccatcctcagaag
actggagaaatgattgaggaatgcatgggcaccgtggccctgtgctccatcacaaacacc
tctcagaaacaacgtgggatgaaaaagcaagacagttcatacagtatgatgccattttta
taa

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_4|201_aa
MKRSSPALASAPPKAPDATAEENRVLLAMVNPTVFFDIAVDGEPLGRVSFEVGRAAACGN
GAQKVGRGRENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFE
DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMER
FGSRNGKTSKKITIADCGQLE

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_4|606_bp
atgaagcgatcctccccggccttggcctccgcgcctcctaaagcgccagacgccaccgcc
gaggaaaaccgtgtactattagccatggtcaaccccaccgtgttcttcgacattgccgtc
gacggcgagcccttgggccgcgtctcctttgaggtcgggcgggcggcggcgtgcgggaat
ggggcccagaaagtgggccggggtcgggaaaattttcgtgctctgagcactggagagaaa
ggatttggttataagggttcctgctttcacagaattattccagggtttatgtgtcagggt
ggtgacttcacacgccataatggcactggtggcaagtccatctatggggagaaatttgaa
gatgagaacttcatcctaaagcatacgggtcctggcatcttgtccatggcaaatgctgga
cccaacacaaatggttcccagtttttcatctgcactgccaagactgagtggttggatggc
aagcatgtggtgtttggcaaagtgaaagaaggcatgaatattgtggaggccatggagcgc
tttgggtccaggaatggcaagaccagcaagaagatcaccattgctgactgtggacaactc
gaataa

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_5|238_aa
MHGVRKKPSYNSTKSSMDGLILHPATGLVFVLSKQCEEIHQPVVWTCEQREAESLKSIKN
DNSMSPAFLAYVNTYVFLATGPVPPAHPAALTMFSAPTPPPLGRAPSRCRPAPPPPLSQH
RPPPPEPDNTPCPPRAAVANARLSCWFEPQRLFNRAPPSSQTPPPRHRLPNGCLFLHTAR
GGGASSPNSDALSAFHQAPKPDEQKGKPMRLDASQTKANKNIAREQGRRATGKDSKIS

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_5|717_bp
atgcatggagtaagaaagaaaccatcctacaatagcaccaaatccagcatggatggactc
atcctccaccctgctactggacttgtctttgtactctcaaagcagtgtgaggagattcat
caaccggtggtgtggacatgtgaacagcgtgaggcagagagtttaaaatctatcaagaac
gacaactcaatgtctcctgcatttttagcttatgttaatacttatgtatttttagctact
ggccccgtgcccccggcccacccggccgcccttaccatgttctcggcgccgactccgcct
ccgctcggccgcgcgccctcccgctgccgacccgcgccgccgccgccgctctcgcagcac
cgaccgccgccgccggagccggacaataccccgtgcccgcctcgcgctgctgtggccaat
gcccgcttgtcttgctggttcgaaccccagcggctgttcaatcgcgcgcctccttctagc
cagaccccgcccccccggcaccgccttcctaacggctgtttgtttttgcacacggcacgc
ggaggcggggcctccagccccaatagtgacgcgctctctgcctttcaccaggcgcccaag
cctgacgaacagaaaggcaaaccaatgagattggacgcctcgcagacgaaagccaataaa
aatatcgcccgcgagcaagggaggcgggccactgggaaggacagcaaaattagctaa

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_6|312_aa
MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
GEESEGEEVDED

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_6|939_bp
atggcggacggcgacagcggcagcgagcgcggcggcggcggtgggccgtgcgggttccag
cccgcgtcccgcggcggcggcgagcaagagacgcaggagctggcctcgaagcggctggac
atccagaacaagcgcttctacttagatgtgaagcagaacgccaagggccgcttcctcaag
atcgccgaggtgggcgcgggcggttccaagagccgcctcacgctgtccatggcggtggcc
gccgagttccgcgactcgctgggcgacttcatagaacactacgcgcagctgggccctagc
agccccgagcagctggcggctggcgccgaggagggcggcgggccgcggcgcgcgctcaag
agcgaattcttggtgcgtgagaaccgcaagtactacctggacctcaaggagaaccagcgc
ggccgcttcctgcgcatccgccaaacggtcaaccgcggcggtggcggcttcggcgcgggc
cccgggccgggcggcttgcagagcggccagaccatcgcgctgcctgcgcagggcctcatc
gagttccgcgacgcgctggcgaagctcatagacgactacggaggcgaggacgacgagctg
gcaggcggcccgggaggcggcgccgggggcccagggggcggcctgtatggagagctcccg
gagggcacctccatcaccgtggactccaagcgcttcttcttcgatgtgggctgcaacaaa
tacggggtgtttctgcgagtgagcgaggtgaagccgtcctaccgcaatgccatcaccgta
cccttcaaagcctggggcaagttcggaggcgccttttgccggtatgcggatgagatgaaa
gaaatccaggaacgacagagggataagctttatgagcgacgtggtgggggcagcggcggc
ggcgaagagtcagagggtgaggaggtggatgaggattga

>gi568815591f:44696725_44901419|GENSCAN_predicted_peptide_7|51_aa
MKKHKDEKRNDTNTVMLTFWGICVKNTIIAAVLKLMSNPPYLLAAPTPNYY

>gi568815591f:44696725_44901419|GENSCAN_predicted_CDS_7|156_bp
atgaagaaacataaagatgaaaagcgtaatgacacaaacaccgtgatgttaacattttgg
ggaatctgtgtgaagaatactattattgcagctgttctgaaactgatgtcaaatccaccc
tacctgctggcagctcccacacctaattactactga