GENSCAN 1.0	Date run:  4-Nov-116	Time: 15:19:10

Sequence gi568815591f:12588255_12788854 : 200600 bp : 38.65% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   1287   1282    6                               1.05
 1.05 Term -   4348   3266 1083  1  0   61   55   457 0.225  30.81
 1.04 Intr -   6568   5489 1080  1  0   63  -18   617 0.132  38.00
 1.03 Intr -   6764   6668   97  1  1   83   84    33 0.499   1.49
 1.02 Intr -   7157   7024  134  2  2   67   48   116 0.736   4.02
 1.01 Init -   8047   7940  108  1  0   99   86     8 0.550   1.97
 1.00 Prom -  11253  11214   40                              -5.55

 2.00 Prom +  11385  11424   40                              -5.15
 2.01 Init +  12109  12111    3  0  0   61   77     0 0.374  -3.75
 2.02 Intr +  16260  16409  150  2  0   86   67   149 0.420  12.04
 2.03 Intr +  34547  34639   93  1  0   86  101   119 0.999  12.24
 2.04 Intr +  36756  36888  133  2  1   15   93   128 0.954   5.30
 2.05 Intr +  37508  37596   89  0  2   72   55    59 0.936  -0.23
 2.06 Intr +  38330  38545  216  1  0   62   53   188 0.987  10.48
 2.07 Intr +  40847  40968  122  1  2   81   89   102 0.996   7.97
 2.08 Intr +  47791  47881   91  1  1   79   47   192 0.985  13.28
 2.09 Intr +  49124  49372  249  1  0   92   71    98 0.701   5.21
 2.10 Intr +  52093  52263  171  0  0  105   80   115 0.998  11.62
 2.11 Intr +  55884  56061  178  2  1   87   89   194 0.999  17.97
 2.12 Intr +  56330  56451  122  0  2   55   81    45 0.573  -0.21
 2.13 Intr +  61213  61290   78  0  0   75   98    98 0.572   8.33
 2.14 Intr +  63587  63647   61  1  1   88  107    68 0.039   6.09
 2.15 Term +  72199  72287   89  2  2  121   36   103 0.059   5.24
 2.16 PlyA +  72774  72779    6                              -0.45

 3.03 PlyA -  73335  73330    6                               1.05
 3.02 Term -  73807  73640  168  1  0   20   49   183 0.817   4.50
 3.01 Init -  74923  74876   48  1  0   72   92    63 0.700   6.10
 3.00 Prom -  81748  81709   40                              -5.65

 4.00 Prom +  83468  83507   40                              -4.05
 4.01 Init +  87424  87482   59  0  2   95   60   123 0.905  11.03
 4.02 Intr +  97524  97662  139  0  1   10    6    96 0.000  -6.85
 4.03 Intr +  98715  98789   75  2  0   65   99    88 0.003   6.39
 4.04 Term + 100058 100603  546  1  0   62   42   312 0.004  17.29
 4.05 PlyA + 100904 100909    6                               1.05

 5.00 Prom + 101033 101072   40                              -7.75
 5.01 Init + 103397 103445   49  1  1   86   58    57 0.190   1.67
 5.02 Intr + 112971 113118  148  1  1  111   94    80 0.699   9.27
 5.03 Intr + 138366 138507  142  0  1  103   69    38 0.039   2.83
 5.04 Intr + 169935 170062  128  2  2  121   71   137 0.809  13.86
 5.05 Term + 183331 183400   70  1  1   91   42   106 0.294   2.73
 5.06 PlyA + 185135 185140    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  63587  63766  180  1  0   88   39   173 0.953   9.03
S.002 Sngl + 100001 100603  603  1  0   69   42   318 0.996  21.24


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:12588255_12788854|GENSCAN_predicted_peptide_1|833_aa
MVEYDLLGTRHWKKEERLRLACVRLPRHTAYSHLPRAYSKVTRLAYSPTGSMGEVTRNVD
KPKLRPLVNSYIETWSQDDMCQPPLPEPAKDPKDLPKFSHCWPPHPPSKPLRGASGSSVS
WTPDSAATSSIPYKACKTGAALSRLCRLWSLLPLPSPPPFTMGASQSTPPKTTPLGCLLR
NRKALGLRSGIRSKRLIFYCNTAWPQYQLDNGSQWPENGTFDFNILRDLDNFCHRNEKWS
EIPYIQAFFILRNHPSLCHSCSTFQILLTSSKPDSSPVTPPTDPADDSSSFDPVDFLPPR
QHHDPPPEHHDPPPYVPAPALPLSPTLSNQPTSDSESSLPPPLTRSRAQCAQQPAPLLPL
REVAGVEGIVHVHVPFSFYDLLQIEERLGSFSSDPDTYIKEFKYLTQSYELTWHDLYFIL
SSTLLPEEKERVWLAAQAYADDLHQQDPTKPVGAAAVPWEEPSWEYQPTDPGQSPLLLLS
ASPAPDPFPQYPLPASLINPSVAAHHDPIRIQLKDSSKFPNVPQYPISLTHQKGLQPIVN
KLCSCSLLRPTHSPYNTPILPVKKSDGSYRLVHNLRAISQAVLPIHPIVHNPYPLLSLVA
TNTTLYTAIDLKDAFFTISLHPDSQNLFAFTWTDPDTLQSQQLTWTVLPQGFRDSPHFFG
QALARNLTSLNLSPSHLQYVDDLLLCSPSLKDSQTHTATALLNFLAIKGYRVSPSKAQLS
ISMMTYLGIQLSPGAQAMTPARAALIENLPPPSSKSEILSFPGLAGFFRIWISNFALLAH
PLYEVAKGPPNEPLNPSHNILPSFHKLQTALVTASAPSLPDISQPFTLYTAES

>gi568815591f:12588255_12788854|GENSCAN_predicted_CDS_1|2502_bp
atggtggagtatgaccttctggggacacgccactggaaaaaggaagaaagactcaggttg
gcatgtgtacgacttcctagacacactgcatattctcacctcccaagggcctacagcaag
gtcaccagacttgcttacagccctacgggcagcatgggggaggtcacgagaaacgtggat
aaacctaagttacgccctcttgtaaattcctatattgaaacctggtcacaagatgatatg
tgccaacctccccttcccgaacctgctaaagaccctaaggatctcccaaaattctcccat
tgttggccacctcatccaccatcaaagcctctgagaggggcctctggttcctctgtttcc
tggacgcctgactccgcagctacctcctctattccatacaaggcctgcaagacaggcgcc
gccctctctcgtctttgtcgtctgtggtcccttcttcctctaccctcacctcctccattc
actatgggagcctctcagtctacccctcccaagaccaccccccttgggtgtctcctccgc
aatcgcaaggctctcggcctccgttcagggatccgttctaagaggcttatcttttactgc
aatactgcatggcctcaataccaattggacaatggctcccaatggcccgaaaatggcact
ttcgatttcaatatacttagagacttagacaacttttgccatcgcaatgagaaatggtct
gagattccttatattcaggctttcttcattctccgtaaccacccttctctctgccactcc
tgctctactttccaaatcctactcaccagctcaaaacctgactcatctcccgtcacccca
cccacagacccagccgatgactcctcttcctttgaccccgtggattttctccctcctcga
cagcatcatgatcctccaccagagcatcatgatcctccaccgtatgtccctgctccggct
ctacccctctcccccactctctccaaccaacccacttctgactctgagtcctctctgcct
cctcccctcacccgctctcgggcccaatgtgctcagcaaccagctcccttgcttcctctc
cgggaagtagcgggagttgaggggatcgtccatgtccacgtccctttctccttctacgat
ctcttacagattgaagaacgtctcgggtccttctcctccgatcctgatacttacatcaaa
gaatttaaatatcttactcaatcttatgaactcacttggcatgatctctactttatcctc
tcttctaccctccttccagaagagaaggaaagagtgtggctcgcagcacaggcatatgcc
gatgaccttcatcagcaggatcctactaagcccgtaggagctgctgctgttccctgggaa
gagccttcctgggaataccaacccacagaccctggccaaagtcccctcctgctcctctcc
gctagtccggcccctgacccctttccccagtacccacttcctgcctctctcattaaccct
tccgtagctgctcaccatgaccccatcagaatccagttaaaagactcttccaaatttccc
aatgttcctcaataccccatctctctaacccaccaaaagggcctacagcccatcgtaaac
aagctctgctcatgcagtcttcttagaccaacacactctccatataacacccctatcctc
cctgttaaaaagtctgatggctcataccgactcgttcacaacctccgagccatcagtcaa
gctgtcctccctattcatcccatagtccataacccctatccacttctctctctcgtcgct
accaacaccaccctctacactgcaattgacctgaaggatgccttctttaccatttcccta
caccctgattcccaaaacctatttgctttcacctggactgaccctgacaccctccagtca
caacaactcacatggactgtcctccctcagggcttcagggatagccctcatttctttgga
caagctctagcccgaaaccttacttccttaaacctgtctcccagtcatcttcaatatgtg
gacgaccttcttctttgcagcccctctctaaaagactctcaaactcacacggccactgct
ctcttaaactttctcgctatcaaagggtatagggtctccccctccaaggcccaactctcc
atctccatgatgacttacttaggaattcaactttcccctggggcccaggctatgactcca
gccagggcagcattaatagaaaatctacccccaccctcctccaaaagcgaaatcctttcc
ttcccagggctagcaggcttctttagaatatggatttccaactttgccctcctagctcat
cccctctatgaagtggccaaaggccctcccaatgaacccctaaacccctcacataacata
ctccccagcttccacaaactccaaactgctcttgtcactgcgtcagctccgtccttacct
gatatctcccaacctttcactctctatactgctgaaagctga

>gi568815591f:12588255_12788854|GENSCAN_predicted_peptide_2|614_aa
MEIYQWCGSSCNKYERLKANQVATGIRYNERKGRSELIVVEEGSEPSELIKVLGEKPELP
DGGDDDDIIADISNRKMAKLYMVSDASGSMRVTVVAEENPFSMAMLLSEECFILDHGAAK
QIFVWKGKDANPQERKAAMKTAEEFLQQMNYSKNTQIQVLPEGGETPIFKQFFKDWRDKD
QSDGFGKVYVTEKVAQIKQIPFDASKLHSSPQMAAQHNMVDDGSGKVEIWRVENNGRIQV
DQNSYGEFYGGDCYIILYTYPRGQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQV
PESLLKQSPTPKSEGGSGGEGERMNRNGRDKEKRQGERGKKRDRRRGEGREEREIMEEEM
RQVRRRGGGREEREIMEEEMRQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGGQAPAP
PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEY
VASVLKCKTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAEDHPPRLYGCSNKTGRFVI
EEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAETKETHFIRGPKTL
APVTDSGRQSSLGV

>gi568815591f:12588255_12788854|GENSCAN_predicted_CDS_2|1845_bp
atggaaatttatcagtggtgtggttcctcgtgcaacaaatatgaacgtctgaaggcaaac
caggtagctactggcattcggtacaatgaaaggaaaggaaggtctgaactaattgtcgtg
gaagaaggaagtgaaccctcagaacttataaaggtcttaggggaaaagccagagcttcca
gatggaggtgatgatgatgacattatagcagacataagtaacaggaaaatggctaaacta
tacatggtttcagatgcaagtggctccatgagagtgactgtggtggcagaagaaaacccc
ttctcaatggcaatgctgctgtctgaagaatgctttattttggaccacggggctgccaaa
caaattttcgtatggaaaggtaaagatgctaatccccaagagaggaaggctgcaatgaag
acagctgaagaatttctacagcaaatgaattattccaagaatacccaaattcaagttctt
ccagaaggaggtgaaacaccaatcttcaaacagttttttaaggactggagagataaagat
cagagtgatggcttcgggaaagtttatgtcacagagaaagtggctcaaataaaacaaatt
ccctttgatgcctcaaaattacacagttctccgcagatggcagcccagcacaatatggtg
gatgatggttctggcaaagtggagatttggcgtgtagaaaacaatggtaggatccaagtt
gaccaaaactcatatggtgaattctatggtggtgactgctacatcatactctacacctat
cccagaggacagattatctacacgtggcaaggagcaaatgccacacgagatgagctgaca
acatctgcgttcctgactgttcagttggatcggtcccttggaggacaggctgtgcaggta
ccagaatctttactgaaacaaagtccaacacccaaaagtgagggaggaagtggtggagag
ggagaaaggatgaacagaaatgggagggacaaagagaaaagacagggagaaaggggaaag
aaaagggataggaggagaggagagggaagagaagagagggaaatcatggaggaagaaatg
agacaagtaaggaggagaggagggggaagagaagagagggaaatcatggaggaagaaatg
agacaaatccgagtctcccaaggcaaagagcctgttcacctactgagtttgttcaaagac
aaaccgctcattatttacaagaatggaacatcaaagaaaggaggtcaggcacctgctccc
cctacacgcctctttcaagtccggagaaacctggcatctatcaccagaattgtggaggtt
gatgttgatgcaaattcactgaattctaacgatgtttttgtcctgaaactgccacaaaat
agtggctacatctgggtaggaaaaggtgctagccaggaggaggagaaaggagcagagtat
gtagcaagtgtcctaaagtgcaaaaccttaaggatccaagaaggcgaggagccagaggag
ttctggaattcccttggagggaaaaaagactaccagacctcaccactactggaaacccag
gctgaagaccatccacctcggctttacggctgctctaacaaaactggaagatttgttatt
gaagagattccaggagagttcacccaggatgatttagctgaagatgatgtcatgttacta
gatgcttgggaacagatatttatttggattggcaaagatgctaatgaagttgagaaaaaa
gaatctctgaagtctgcagagacaaaggagacacattttatccgtggacccaaaactctg
gcgccagtcacagactcgggaagacagtcttcccttggtgtttaa

>gi568815591f:12588255_12788854|GENSCAN_predicted_peptide_3|71_aa
MIGKEGVCVFMKNYAEASEAIGQCQSSATKPRRSGKESVTELWPRVPGPLGVAARSDSLI
SSGVPHRWDTT

>gi568815591f:12588255_12788854|GENSCAN_predicted_CDS_3|216_bp
atgatcggcaaggaaggcgtgtgtgtttttatgaagaactacgctgaggcttccgaggcg
atcgggcagtgtcagtcttcagccactaagccgagaagatctgggaaggagtcagtcaca
gagctttggcccagagttccagggcctctgggagtggctgccaggtcggacagtctgatt
tccagtggggtcccgcacagatgggacacgacttag

>gi568815591f:12588255_12788854|GENSCAN_predicted_peptide_4|272_aa
MAEQEQLQSAAPSVNDVEDSNFGADFSTVQDLEMCARHAKTTTINTEDVKLLARRSNSPL
KYIQTKGTGISAPPQRLGETLNEEEGRTVSQSFHIVILGLDCAGKTTVLYRLQFNEFVNT
VPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERM
EEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTC
AIIGDGLKEGLEKLHDMIIKRRKMLRQQKKKR

>gi568815591f:12588255_12788854|GENSCAN_predicted_CDS_4|819_bp
atggccgaacaggaacagctccagtctgcagctcccagtgtgaatgacgtagaagacagc
aatttcggagctgacttttcgacagtgcaagatctagaaatgtgtgcaagacatgcgaaa
accaccaccattaacactgaagatgtgaagctcttagccagaaggagtaattcaccgcta
aaatacattcagacaaaaggaacaggtatcagcgcgcctccccagcggctgggagagacg
ctgaatgaagaagagggaaggacggttagtcagtctttccacattgttattctgggtttg
gactgtgctggaaagacaactgtcttatacaggctgcagttcaatgaatttgtaaatacc
gtacctaccaaaggatttaacactgagaaaattaaggtaaccttgggaaattctaaaaca
gtcacttttcacttctgggatgtaggtggtcaggagaaattaaggccactgtggaagtca
tataccagatgcacagatggcattgtatttgttgtggactctgttgatgtcgaaaggatg
gaagaagccaaaactgaacttcacaaaataactaggatatcagaaaatcagggagtccct
gtacttatagttgctaacaaacaagatttgaggaactcattgtcactttcagaaattgag
aaattgttagcaatgggtgaactgagctcatcaactccttggcatttgcagcctacctgt
gcaatcataggagatggcctaaaggaaggacttgagaaactacatgatatgatcattaaa
agaagaaaaatgttgcggcaacagaaaaagaaaagatga

>gi568815591f:12588255_12788854|GENSCAN_predicted_peptide_5|178_aa
MGFRHVGQAVLELLTSGNGAGPLLKWVSYDLQSHKSENFFMASSKTERQGRFLTLEEEEQ
MKGGRRVPHCFYPQVIYFKSFKADQLCIQVADFKNDPSLIVSAAAPPTPPQAQGDMLPER
KDHASPVYHAVSHSSTSFSDADRWKPEQYLVYTTLSCSEARAVTVHIFRRWSTTPAGK

>gi568815591f:12588255_12788854|GENSCAN_predicted_CDS_5|537_bp
atggggtttcgccatgttggccaggctgttcttgaactcctgacctcagggaatggggca
ggacctcttctgaaatgggtgtcttatgacctacaatcacataagtcagagaatttcttt
atggccagctctaagacagaaaggcagggaagatttctgactttggaagaggaggagcag
atgaaaggaggcaggagggtgcctcactgcttttatcctcaagtgatttactttaaatca
tttaaagcagatcaactttgtatccaagtggctgattttaaaaatgacccatcacttatc
gtatctgctgcagctcccccaacccctcctcaagcccagggagatatgcttcctgagaga
aaggaccacgcttctcctgtttaccatgctgtctcccactctagcacatccttcagcgat
gctgaccggtggaaaccagagcagtacctcgtgtatactacgctatcttgcagcgaggcc
agggctgtaaccgttcacatctttagacgatggtctactacgccagctggcaagtga