GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:24:59

Sequence gi568815589r:96135463_96402104 : 266642 bp : 44.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5448   5628  181  2  1   81   52    84 0.566   3.54
 1.02 Intr +  10846  11516  671  2  2   74   35   660 0.712  50.72
 1.03 Term +  11603  12394  792  1  0   23   41   475 0.751  29.60
 1.04 PlyA +  12481  12486    6                               1.05

 2.00 Prom +  12925  12964   40                              -1.66
 2.01 Init +  17419  17465   47  0  2   71   97    39 0.816   3.26
 2.02 Intr +  31704  31854  151  0  1   97   37    90 0.133   4.96
 2.03 Intr +  32440  32541  102  0  0   19   66    97 0.153   0.97
 2.04 Intr +  32759  32828   70  1  1   33   52    71 0.389  -3.25
 2.05 Intr +  33467  33661  195  0  0   91   94    65 0.577   6.79
 2.06 Term +  33901  33962   62  2  2   65   43    62 0.577  -2.63
 2.07 PlyA +  34423  34428    6                               1.05

 3.21 PlyA -  34846  34841    6                               1.05
 3.20 Term -  36813  36525  289  2  1   35   48   155 0.392   1.05
 3.19 Intr -  37125  37047   79  1  1   77   92    49 0.391   2.81
 3.18 Intr -  38423  38339   85  2  1   92   45    85 0.278   3.99
 3.17 Intr -  44398  44352   47  2  2  106   77    10 0.011  -0.17
 3.16 Intr -  45620  45510  111  0  0   61   34   111 0.010   3.35
 3.15 Intr -  48435  48320  116  2  2   86   18    73 0.004   0.19
 3.14 Intr -  70356  70285   72  2  0   87   41    74 0.085   1.12
 3.13 Intr -  74245  74187   59  1  2   77  105    37 0.177   1.98
 3.12 Intr -  79024  78970   55  0  1  107   97    49 0.548   6.68
 3.11 Intr -  97475  97279  197  2  2  102   58    57 0.017   2.31
 3.10 Intr - 100108 100007  102  1  0   98   77    95 0.928   9.77
 3.09 Intr - 108932 108867   66  2  0  100   94    86 0.923   9.50
 3.08 Intr - 111128 111094   35  0  2   93  116     0 0.235   1.24
 3.07 Intr - 117448 117341  108  2  0   75   95    85 0.479   8.16
 3.06 Intr - 119446 119406   41  0  2   21  109    66 0.005  -0.13
 3.05 Intr - 143971 143909   63  0  0  100   95    61 0.015   5.83
 3.04 Intr - 151590 151514   77  0  2   78    1   123 0.018   0.91
 3.03 Intr - 154105 154016   90  1  0   84   59    40 0.409   0.89
 3.02 Intr - 163000 162954   47  2  2   79   99    51 0.934   3.43
 3.01 Init - 166642 166489  154  1  1  110  110   146 0.994  17.18
 3.00 Prom - 168753 168714   40                              -5.66

 4.13 PlyA - 170380 170375    6                               1.05
 4.12 Term - 179437 179318  120  1  0  120   38    45 0.534   1.17
 4.11 Intr - 184715 184623   93  2  0  120   13    94 0.670   5.26
 4.10 Intr - 186618 186536   83  1  2  130   97   -49 0.204  -0.44
 4.09 Intr - 188707 188629   79  1  1   84  113    28 0.164   4.02
 4.08 Intr - 207947 207810  138  2  0   74   85    13 0.340   0.26
 4.07 Intr - 208534 208442   93  1  0   89   99    52 0.651   6.56
 4.06 Intr - 209939 209837  103  1  1  109   76    20 0.417   3.08
 4.05 Intr - 215709 215641   69  2  0   82   86    89 0.390   6.40
 4.04 Intr - 218531 218485   47  2  2   77   39    45 0.125  -4.29
 4.03 Intr - 229088 229002   87  2  0  107  115    17 0.326   6.47
 4.02 Intr - 232843 232810   34  0  1   91  109     7 0.201   1.33
 4.01 Init - 248172 248015  158  0  2   70   76   418 0.649  36.18
 4.00 Prom - 250414 250375   40                              -4.46

 5.05 PlyA - 250503 250498    6                               1.05
 5.04 Term - 252997 252775  223  0  1   78   33   299 0.999  19.79
 5.03 Intr - 257074 256936  139  2  1   37   55   165 0.927   7.62
 5.02 Intr - 259480 259361  120  2  0   72   64    89 0.890   5.37
 5.01 Init - 264186 264138   49  0  1   86   58    55 0.391   1.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  48382  48452   71  2  2  125   94    40 0.832   7.20
S.002 Term +  49913  49993   81  1  0  113   54    55 0.802   2.29
S.003 Term - 151590 151510   81  0  0   78   48   122 0.908   4.89


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:96135463_96402104|GENSCAN_predicted_peptide_1|547_aa
CCRSGVLKAGGLARNREAWAAARGGTSSWSTLDQSRPGQSLARSPSEVELDPLHAQAEEQ
GNLPYDVTEESIKEFFRGLNISAVRLPCEPSNPVRLKGFGYAEFEDLDSLLSALSLKEES
LGNRRIRVDVADQAQDKDRDDCSFGRDRNRDSDKTGTDWRARPATDSFDDYPPRRGDDSF
GDKYRDRYDSDRYRDGYRDGYRDGQRRDMDPYGGRDRYDDRGSRDYDRGYDSRIGSGRRA
FGSGYRRDDVSEEAGTTMKTDMTDGMIGLGAPEMITLWMIIGVMSTRAASIFGGAKPVDT
AAREREVEERLQKEQEKLQHQLDEPKLERRPPERHPSWRSEETQERERSRTGSESSQTGT
STTSGRSKSAQDARRRENEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAW
VKRSSNPPARSQSSDTEQQSPTSGEGKVAPAQPSEEGPARKDENKVDGMNVPKGQTGNSS
RGPGDGGNKDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDGEDEN
EGEDYAE

>gi568815589r:96135463_96402104|GENSCAN_predicted_CDS_1|1644_bp
tgctgtcgaagtggcgtcctgaaagccgggggccttgcccggaacagggaggcttgggct
gcggccaggggaggcaccagcagctggagcacactagaccagagccggccaggacagagc
ctggcccgatctccctcggaggtagaactggacccccttcatgctcaggctgaggagcag
ggaaacctaccctatgatgttacagaagagtcaattaaggaattctttcgaggattaaat
atcagtgcagtgcgtttaccatgtgaacccagcaatccagtgaggttgaaaggttttggt
tatgctgaatttgaggacctggattccctgcttagtgccctgagtctcaaggaagagtct
ctaggtaacaggagaattcgagtggacgttgctgatcaagcacaggataaagacagggat
gattgttcttttggccgtgatagaaatcgggattctgacaaaacaggtacagactggagg
gctcgtcctgctacagacagctttgatgactacccacctagaagaggtgatgatagcttt
ggagacaagtatcgagatcgttatgattcagaccggtatcgggatgggtatcgggatggg
tatcgggatggccaacgccgggatatggatccatatggtggccgggatcgctatgatgac
cgaggcagcagagactatgatagaggctatgattcccggataggcagtggcagaagagca
tttggcagtgggtatcgcagggatgatgtctcagaggaggcggggaccactatgaagacc
gatatgacagacgggatgatcggtcttggagctccagagatgattactctctggatgatt
ataggcgtgatgtccactcgagctgcttctatctttggaggggcaaagcccgttgacaca
gctgctagagaaagagaagtagaagaacggctacagaaggaacaagagaagttgcagcat
cagctggatgagccaaaactagaacgacggcctccggagagacacccaagctggcgaagt
gaagaaactcaggaacgggaacggtcgaggacaggaagtgagtcatcacagactgggacc
tccaccacatctggcagaagtaagtcagcccaggatgcacgaaggagagagaatgagaag
tctctagaaaatgaaacactcaataaggaggaagattgccactctccaacttctaaacct
cccaaacctgatcagcccctaaaggtaatgccagcccctccaccaaaggagaatgcttgg
gtgaagcgaagttctaaccctcctgctcgatctcagagctcagacacagagcagcaatcc
cctacaagtggtgagggaaaagtagctccagctcaaccatctgaggaaggaccagcaagg
aaagatgaaaacaaagtagatgggatgaatgtcccaaaaggccaaactgggaactctagc
cgtggtccaggagatggagggaacaaagaccactggaaggagtcagataggaaagatggc
aaaaaggatcaagactccagatctgcacctgagccaaagaaacctgaggaaaatccagct
tccaagttcagttctgcaagcaagtatgctgctctctctgttgatggtgaagatgaaaat
gagggagaagattatgccgaatag

>gi568815589r:96135463_96402104|GENSCAN_predicted_peptide_2|208_aa
MNKHRDFQVALIERDSEKCRALLSFEPNARAKAGLLLEVRLPQLRSSHARRKRQQASSWT
FFQVPQRLYIQLEESEVNMIITKANIPPMTSQERKRCVEMTQHEKDSIERAPVQAASGIH
WEPGTLQYTEEIKASFQKPAVQLRTIQACACTAPPKDLPMQMAGPLSTASVSAGLGQGLR
ISISNKAPGKALVTVSSGTAQLPGMTKR

>gi568815589r:96135463_96402104|GENSCAN_predicted_CDS_2|627_bp
atgaataaacacagagactttcaagttgccttgattgaacgggacagcgagaaatgcaga
gctctcctgtcatttgaacctaatgctcgggccaaggcaggcctgctcctcgaggtccgc
ctacctcagcttagatccagccatgcgcgcaggaagcggcagcaggccagctcatggacg
ttcttccaggtccctcaaaggctgtacatccagctagaagaatccgaagtcaacatgata
atcacaaaggcaaacattccaccaatgacaagtcaagagcgcaagagatgtgttgagatg
acccagcacgagaaggacagcattgaaagagcccctgtccaggcggcttctggcattcac
tgggaaccagggaccctacagtacacagaagagataaaagcaagcttccagaaacctgca
gtccagcttcgcactatacaagcctgcgcgtgcacggcgcctcccaaggacttgcccatg
cagatggctgggcccctttccacagcatctgtttccgcaggtctgggtcagggcctgaga
atcagcatttctaacaaggctccagggaaggccctggtcacagtctcctcagggacagct
cagctgcctggaatgaccaagcgctga

>gi568815589r:96135463_96402104|GENSCAN_predicted_peptide_3|630_aa
MGDVLEQFFILTGLLVCLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGI
GKAYSFEEADEVNWETKVLNSLAILLMDSKTQKWRLEERGPDPDPKRVFSDLIKERIQGK
SIKCLDKLFQPITNQEIFESTYDLRTLEKLEAIATEIERTTGRSVKIIQADFTKDDIYEH
IKEKLAGLEIGILDDTANSETYGIKAFVCAFSKALQEEYKAKEVIIQAGFLSLIPAWAFY
SGAFQRLLLTHYVAYLKLNTKPSICATSQEAEGRRVPFGWHWEQENEVIMGCCSKKYWQL
LLGRLPGVSSLSCSCGWEPEHPTSKTLLMHSASHVGIGDEADYVAEVNAGCAPVECKGIL
RTSKREIRSNTKMKVLEMQPNNKKKPMAGVIIRLQRATSWRCSLNVTCEEEQWSRGMQRK
KRYRGRRDCGMYSQEITDSQDAWQQVGGQNFWRWNLLDSVSPEKVPSEAPCYPSTMGIVM
SMRTVCSSKRDLPAAMAVSEAKGKGKPKEYSGQANFPDSRNQCKVGHKDPQGLVINAAMP
SKAHGPLYPLPVEPEPKTLPFHLTNVFIEDLEYSKSYSRPVDFKCGLQTSSFGITQKPVS
NANSQAPSLAKPEALGVSPASVSNKPTRRL

>gi568815589r:96135463_96402104|GENSCAN_predicted_CDS_3|1893_bp
atgggggacgtcctggaacagttcttcatcctcacagggctgctggtgtgcctggcctgc
ctggcgaagtgcgtgagattctccagatgtgttttactgaactactggaaagttttgcca
aagtctttcttgcggtcaatgggacagtgggcagtgatcactggagcaggcgatggaatt
gggaaagcgtactcgttcgaggaggctgatgaagtgaattgggagacaaaggtgcttaat
tctttagccatcctgttgatggattccaagactcaaaaatggaggctagaggaaaggggt
cctgatccagaccccaagagagtgttctcggacctcatcaaagaaagaattcagggcaag
tccataaagtgtttagataaactttttcaaccaattaccaatcaggaaatctttgaatcc
acctatgacctccggacgctggaaaaactagaggccattgccacagagatcgagcggact
acagggaggagtgtgaagattatacaagcagattttacaaaagatgacatctacgagcat
attaaagaaaaacttgcaggcttagaaattggaattttagatgacacagctaattctgaa
acatatggaatcaaggcgtttgtgtgcgcattttccaaggccctgcaagaggaatataaa
gcaaaagaagtcatcatccaggcgggctttctgagcctgatcccggcctgggccttctac
agcggtgccttccaaaggctgctcctgacacactatgtggcatacctgaagctcaacacc
aagccttccatctgtgctacctcccaggaagccgaaggccgcagagtccctttcggatgg
cactgggagcaggaaaatgaggtgattatgggctgctgctccaagaagtattggcagctg
ttgctggggcggctccctggggtgtcatccctttcttgctcttgtggatgggaaccagag
caccccacttcaaagactctgctcatgcactctgccagtcatgtgggcattggcgatgag
gcagactatgttgccgaagttaatgcaggatgtgctccagtggaatgtaaaggtatccta
cgaacaagcaagagagagattagatcaaacaccaagatgaaagtgttggagatgcagccc
aataacaaaaagaaacccatggctggggtaattataaggcttcagcgagctacgtcctgg
aggtgctccctgaatgttacctgtgaggaggagcagtggagcaggggaatgcagaggaag
aagaggtatcgtggaagaagggattgtgggatgtacagccaggagatcacagactctcag
gatgcctggcagcaagtggggggccagaatttctggcggtggaacttactggacagcgtc
agccctgagaaggttccctctgaagctccctgttacccaagcacaatgggaattgtaatg
agcatgcggacagtctgctcctcaaagagggacttgcctgcagccatggctgtttcagag
gccaaaggaaaagggaaaccgaaagaatacagcggccaagcaaactttcctgacagcaga
aatcaatgcaaggtgggccataaagacccacaaggccttgttataaatgctgcaatgccg
tccaaagctcacggccctctctatcctttaccagtagaaccagaacccaagacactgcct
tttcatttaaccaacgtatttattgaggacctggaatactccaagtcttattctaggcca
gtggatttcaaatgtggtctccagaccagcagcttcggcatcacccagaaacctgtgagc
aatgcaaactctcaggcccccagccttgctaagccagaagctctgggggtcagccctgca
tctgtgtctaacaagcccaccaggcgactctga

>gi568815589r:96135463_96402104|GENSCAN_predicted_peptide_4|367_aa
MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLLSGCSVVDDVKPVLGKQYSLNIILSV
FAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACF
MIIPTLIISVSTGDLQQLFVPLEYFKTYPSHHAILPLNIPGSTFEFWEGVVLSAFALKPY
LLLVSADVLHGSVQLLQFSPDDSSGWSHQECIRCLHWDINRWRLHFLFVKLCRVKYLVCS
GAFTTGAFPHMLTYRQPLVYGKEAQMDRLDLVEVLPQVGIAKKGSFSSRFLGNWIQLGED
HLNSHPI

>gi568815589r:96135463_96402104|GENSCAN_predicted_CDS_4|1104_bp
atgacggccggcggccaggccgaggccgagggcgctggcggggagcccggcgcggcgcgg
ctgccctcgcgggtggcccggctgctgtcggcgctcttctacgggacctgctccttcctc
atcgtgcttgtcaacaaggcgctgctgaccacctacggtttcccgtcaccaattttcctt
ggaattggacagatggcagccaccataatgatactatatgtgtccaagctaaacaaaatc
attcacttccctgattttgataagaaaattcctgtaaagctgctctctggatgcagtgtg
gttgatgatgtgaagcctgtgctggggaagcagtattcactcaacatcatcctcagtgtc
tttgccattattctcggggctttcatagcagctgggtctgaccttgcttttaacttagaa
ggctatatttttgtattcctgaatgatatcttcacagcagcaaatggagtttataccaaa
cagaaaatggacccaaaggagctagggaaatacggagtacttttctacaatgcctgcttc
atgattatcccaactcttattattagtgtctccactggagacctgcaacagctttttgtt
cctctggagtattttaaaacctatcccagccatcacgccattttacctctaaatattcca
ggatccacatttgaattttgggaaggtgttgttctttcagcatttgccctgaaaccgtat
ctgctgctggtttctgctgatgtactccacggttctgtgcagctattacaattcagccct
gacgacagcagtggttggagccatcaagaatgtatccgttgcctacattgggatattaat
cggtggagactacattttctctttgttaaactttgtagggttaaatatttggtttgttca
ggagcttttaccacaggtgcatttcctcacatgctcacctaccgccaacccctggtgtat
gggaaggaggcccaaatggataggctcgacttggtggaagttctgcctcaggtgggcata
gccaaaaaggggtcattctcttctcggttcctggggaattggatccaactgggagaagac
cacctgaattctcatcccatctaa

>gi568815589r:96135463_96402104|GENSCAN_predicted_peptide_5|176_aa
MGFRHVGQAGLELLTSGERPYLCDYPDCGKAFVQSGQLKTHQRLHTGEKPFVCSENGCLS
RFTHANRHCPKHPYARLKREEPTDTLSKHQAADNKAAAEWLARYWEMREQRTPTLKGKLV
QKADQEQQDPLEYLQSDEEDDEKRGAQRRLQEQRERLHGALALIELANLTGAPLRQ

>gi568815589r:96135463_96402104|GENSCAN_predicted_CDS_5|531_bp
atggggtttcgccatgttggccaggctggtcttgaactcctgacctcaggtgagaggccc
tatctgtgtgactatccagactgtggaaaagcctttgttcaaagtggacagctcaaaaca
catcagcgtcttcacaccggagagaaaccttttgtttgttcagaaaatggctgcctgagc
agattcacccatgcaaaccgccactgtccgaagcacccctacgccaggctgaagagagag
gagcccacggacacactcagcaaacatcaggctgccgacaacaaggccgcggccgagtgg
ctggcgaggtattgggaaatgagagagcagcgcacccccactttgaaaggcaagctggtt
cagaaggctgatcaggagcagcaggaccctctggaataccttcagtctgatgaagaggac
gacgagaagagaggggcccagcgccggctgcaggagcagcgggagcgcctgcatggagcc
ctcgcgctcatagagcttgccaacctgactggggcgccactccgacagtag