GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:52:43

Sequence gi568815589r_40381710 : 201908 bp : 38.20% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init + 2664004 2664041   38  2  2   86   76    33 0.213   1.43
 1.02 Intr + 2675759 2675815   57  1  0   70  100    49 0.213   1.38
 1.03 Term + 2676209 2676443  235  1  1   41   38   220 0.314   7.11
 1.04 PlyA + 2676808 2676813    6                               1.05

 2.00 Prom + 2683117 2683156   40                              -3.05
 2.01 Init + 2694026 2694112   87  0  0   21   88   176 0.982  11.59
 2.02 Term + 2697137 2697208   72  0  0  107   37    15 0.234  -4.77
 2.03 PlyA + 2698364 2698369    6                               1.05

 3.03 PlyA - 2698392 2698387    6                               1.05
 3.02 Term - 2708465 2708287  179  2  2   50   46   187 0.550   7.57
 3.01 Init - 2711545 2711287  259  0  1   35   68   144 0.346   4.45
 3.00 Prom - 2712973 2712934   40                              -5.15

 4.00 Prom + 2713311 2713350   40                              -6.75
 4.01 Sngl + 2714087 2715523 1437  0  0   37   43   417 0.978  27.62
 4.02 PlyA + 2715543 2715548    6                               1.05

 5.07 PlyA - 2719184 2719179    6                               1.05
 5.06 Term - 2728516 2728157  360  0  0   34   47   201 0.809   4.15
 5.05 Intr - 2729019 2728801  219  2  0   55   80   246 0.938  18.08
 5.04 Intr - 2729348 2729230  119  2  2   65   78   112 0.656   7.16
 5.03 Intr - 2729694 2729557  138  0  0  131   53   142 0.991  14.51
 5.02 Intr - 2730246 2730123  124  2  1   67  105   109 0.990   9.74
 5.01 Init - 2730379 2730332   48  0  0   74   60    58 0.413   2.60
 5.00 Prom - 2732973 2732934   40                             -11.64

 6.00 Prom + 2733254 2733293   40                              -8.05
 6.01 Init + 2734064 2734214  151  0  1   59   33   167 0.773   8.57
 6.02 Intr + 2734269 2734432  164  0  2   85   37    38 0.236  -2.83
 6.03 Intr + 2737734 2738005  272  1  2  121   70   161 0.027  13.02
 6.04 Intr + 2740759 2740929  171  0  0   14   65   139 0.004   2.34
 6.05 Intr + 2745520 2745668  149  0  2  104   43    61 0.353   2.16
 6.06 Intr + 2746108 2746304  197  1  2   48   37   174 0.891   6.51
 6.07 Intr + 2747259 2747366  108  1  0   69   98   105 0.985   9.16
 6.08 Intr + 2749708 2749860  153  2  0   97  113    25 0.838   5.25
 6.09 Intr + 2752911 2753010  100  1  1   67   68    29 0.422  -2.44
 6.10 Term + 2757459 2757574  116  0  2   98   55    83 0.367   3.75
 6.11 PlyA + 2758137 2758142    6                               1.05

 7.00 Prom + 2759147 2759186   40                              -5.55
 7.01 Sngl + 2762472 2763698 1227  1  0   42   49   398 0.864  26.85
 7.02 PlyA + 2764909 2764914    6                               1.05

 8.10 PlyA - 2765197 2765192    6                               1.05
 8.09 Term - 2777702 2777587  116  2  2   93   49    60 0.051   0.35
 8.08 Intr - 2783732 2783663   70  1  1   74   78    49 0.032   0.34
 8.07 Intr - 2789046 2788963   84  2  0  111   97    25 0.171   4.80
 8.06 Intr - 2810091 2810007   85  1  1   62   65    48 0.120  -1.20
 8.05 Intr - 2811280 2811042  239  0  2   66   80   169 0.721   9.39
 8.04 Intr - 2812442 2812403   40  0  1   80   68    41 0.585  -1.39
 8.03 Intr - 2818051 2817998   54  2  0   84   82    49 0.267   1.08
 8.02 Intr - 2818611 2818511  101  2  2   52   76    76 0.365   0.79
 8.01 Intr - 2820318 2820169  150  2  0   66   63    80 0.433   2.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 2743298 2743416  119  0  2   78   61   117 0.847   7.72


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r_40381710|GENSCAN_predicted_peptide_1|109_aa
MNSHVLSEGPGGSILNATDSVSNIFNGGQTGHLDETGAVTKLISDLANRVCSATDLCKYC
AVEPFCDRSLLLTNRRMQTETCAAFTADAQQPAYTDKANENPLIVDHLK

>gi568815589r_40381710|GENSCAN_predicted_CDS_1|330_bp
atgaattcccatgtgttgtcagagggacctggtgggagcattttgaatgctactgattct
gtgagtaatattttcaacggaggtcagacaggccatcttgatgaaactggggcagtcaca
aaactgattagtgatctggcaaacagggtctgctctgctactgatctgtgtaaatattgt
gctgtagagcctttctgtgacaggtcattgctgctaacaaaccgcagaatgcaaacagag
acctgtgctgcgttcactgcagatgcacagcagccagcttacactgacaaagcaaatgaa
aatcctcttattgtcgatcatctcaagtaa

>gi568815589r_40381710|GENSCAN_predicted_peptide_2|52_aa
MKTKKEDEEEDEDEETEEEGKENKEEEQEMVSSAGLFNMFVFRGSSIGTGGS

>gi568815589r_40381710|GENSCAN_predicted_CDS_2|159_bp
atgaaaacaaagaaagaggatgaggaggaagatgaggatgaggagactgaggaggaaggc
aaggagaataaggaagaggagcaagagatggtgtcttctgctggactatttaatatgttt
gtatttagaggcagctccatagggactggaggatcctag

>gi568815589r_40381710|GENSCAN_predicted_peptide_3|145_aa
MSRDGSRFRLKKQSGHDLPQLLCSRSKPPCLPSTTRGKQPTDATVIATTPSPGNSVILDS
LQSAVTGHSLSGDESLHSSVLGTQGPGVKLLTFLVVVTAHKGSVDPKSVQQDLLQTAKTQ
TLHTTETDPSRLSLSLVAAYFYSFT

>gi568815589r_40381710|GENSCAN_predicted_CDS_3|438_bp
atgagtagggatggatccaggttccgcctaaaaaagcagtctggccatgatctgccacag
ctgctgtgctcccggtctaaacctccctgtctccccagcaccaccaggggaaaacagcca
actgatgccacagtgatagcaaccaccccttcccctgggaactcagtcatcttagacagt
ctccagtctgctgtcactggccacagcctgagtggcgatgagagtctgcacagctctgtg
cttggcacccaaggccctggagtgaagctgctgaccttcctggtggttgtcacagctcat
aaaggcagtgtggacccaaagagtgtgcagcaagatttactgcaaacagcaaaaacacaa
accctccacaccacggaaacggacccaagccggttatcactgtcccttgtggcagcctac
ttttattccttcacctga

>gi568815589r_40381710|GENSCAN_predicted_peptide_4|478_aa
MNIDAKILNKILAKRIQEHIKKLIHHDQVGFITGMQGWFNIRKSINVFQHINRAKDKNHM
IISIDAEKAFDRIQQPFMLKTLNTLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKT
GTRQGCPLSPLLFNTVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSA
QNLLKLISNFSKVSEYKINVQKSQALLYTNNTQTESQIMSELPFTIASKRIKYLGIQLTR
DVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMT
FFTELEKTTLKFIWNQKRAHITKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRD
IDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDHFLTP
YTKINSRWIKELNVIPKTIKTLEENLGITIQDIGMGKDFMSTVLKKRISSSEFHIWPN

>gi568815589r_40381710|GENSCAN_predicted_CDS_4|1437_bp
atgaacattgatgcaaaaatcctcaataaaatactggcaaaacgaatccaggagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatcactgggatgcaaggctggttcaat
atacgcaaatcaataaatgtattccagcatataaacagagccaaagacaaaaaccacatg
attatctcaatagatgcagaaaaagcctttgacagaattcaacaacccttcatgctaaaa
actctcaatacattaggtattgatgggacatatttcaaaataataagagctatctatgac
aaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcctattcaacacagttttggaagttctg
gccagggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtc
aaattgtctctgtttgcagacgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcagaatataaaatcaatgta
caaaaatcacaagcattgttatacaccaacaacacacaaacagagagccaaatcatgagt
gaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagg
gatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggat
acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatg
gccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgact
ttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccac
atcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttc
aaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagat
atagatcaatggaacagaacagagccctcagaaataacgccgcatatctacaactatctg
atctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatgg
tgctgggaaaactggctagccatatgtagaaagctgaaactggatcacttccttacacct
tatacaaaaatcaattcaagatggattaaagagttaaacgttatacctaaaaccataaaa
accctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatg
tcaacagtcttaaagaaaagaatttccagctcagaatttcatatctggccaaactaa

>gi568815589r_40381710|GENSCAN_predicted_peptide_5|335_aa
MAEGLRGNAREAQGMGVFGLGSVAHMLLNKTFGSYLGVNLGFGFGVTMGVHVAGRISGAH
MNAAVSFTNCALGRVPWRKFPVYVLGQFLGSFLAAATIYRLFYMAILHFSGGELMVTGPV
ATAGIFATYLPDHMTLWRGFLNEEWLTGMLQLCLFAITDREKNPALPGTHALVIGILVVI
IRVSHGMNTGYAINPSRDLPPPHLHLHCWLGQTGLQSWPEVDEGAVLGISPLSWPLPLAC
SNGENLWWVPVVAPLLGASLGGIIYLVFIGSTIPREPLKLEDSVAYEDHGITVLPKMGSH
EPMISPLTLISMSPANRSSVHPAPPLHESMALEHF

>gi568815589r_40381710|GENSCAN_predicted_CDS_5|1008_bp
atggcagagggtcttcgaggcaacgccagggaggcccagggcatgggggtattcggcctt
ggttccgtggcccatatgcttctaaataaaacatttgggagctaccttggtgtcaacttg
ggttttggcttcggagtcaccatgggagtgcacgtggcaggccgcatctctggagcccac
atgaacgcagctgtgagcttcactaactgtgcactgggccgtgtgccctggaggaagttt
ccagtctatgtgctggggcagttcctgggctccttcctggcggctgccaccatctacaga
ctcttctacatggccattctccacttttcgggtggagagctgatggtgaccggtcccgtt
gctacagctggcatttttgccacctaccttcctgatcacatgacattgtggcggggcttc
ctgaatgaggagtggctgaccgggatgctccagctgtgtctcttcgccatcacggaccgg
gagaaaaacccagcactgccaggaacacacgcgctggtgataggcatcctcgtggtcatc
atcagggtgtcccatggcatgaacacaggatatgccatcaatccatcccgggacctgccc
cccccgcatcttcaccttcattgctggttggggcaaacaggtcttcagtcttggcccgag
gtggatgagggtgctgtcctgggcatcagccccctcagctggcctctgcctcttgcctgc
agcaatggggagaacttgtggtgggtgccagtggtggcaccacttctgggtgcctctcta
ggtggcatcatctacctggtcttcattggctccaccatcccacgggagccactgaaattg
gaggactctgtggcatatgaagaccatgggataactgtattgcccaagatgggatctcat
gaacccatgatctctccccttaccctcatctctatgagccctgccaacagatcttcagtc
caccctgccccacccttacatgaatccatggccctagagcacttctaa

>gi568815589r_40381710|GENSCAN_predicted_peptide_6|526_aa
MSSSGNTGLHSTLHGNSQLEWQQLYSLAQIGTLQPAKVPTALSGRSLGPRRPGWLQPLLS
LISECGLAHPTLPHSQEASSKGNTPGSCNTDQSTSLVLAAINGAKAPSSEARNGQCDPWG
QNGEGVMEGHGRAPLTSCCPPTHHHDICAHELSQELSLHLPLIFLAPYFLDLCYHGPGDH
FGATGGPDTVARAHGHPWEEKQSIEQLLCSVMSIAPAERVGTVGHVEEVNGLEEGVGGSQ
RKGNLGQEKKAGGGEVSKAGIWLVPLEPSPDALPKITSLIWPAVPWRPSSEAGLCEVRGG
VLGKASKAPVKEPQLDRGMGLGAQRRGSSGTEVQSGEALGASGSPRGLLEPRPDWVSNNG
AGSLGFQQLPIVDKIRTIAQAVYGAKDIELCPEAQVKIDRYTQQGFGNLPICMAKTDLSL
SHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTQFTQQIHSLGQCCIRHSARGYRKPQ
PKEAFSASGAPLTSLLGWTLESRKLLEHVWGISDVTRYECRVGLLD

>gi568815589r_40381710|GENSCAN_predicted_CDS_6|1581_bp
atgagcagctcaggcaacactggcctgcattccaccctccatggcaacagtcagctggag
tggcagcagctatacagccttgcacagattggcactctgcagccagccaaagtccccacc
gccctgagtggccgctctcttggcccccgtaggcccggatggctccagcccctcctctcc
ctgatcagtgaatgtggcctagcccatccaactctcccccacagccaggaggccagctcc
aagggcaacacacctggaagctgcaacacagatcagtccacttcccttgtcctggctgca
ataaatggggccaaggctcccagctcagaggcaaggaatggacaatgtgacccatggggt
cagaatggggagggggtcatggaaggccatggcagagccccactcacttcgtgctgccca
cccactcaccatcatgacatatgtgctcatgaactcagccaggaactctcgctccatctt
cctctcatcttcctcgcaccatatttcctggatctttgctatcacggaccaggagaccat
tttggagccacgggtggacctgatacagtggcccgagcccatggacacccgtgggaagaa
aagcaatcaattgagcaattactatgcagtgtgatgagcattgccccagctgaaagagtg
ggcaccgtggggcatgtggaggaagtgaatggcctagaggagggggtaggaggctcccag
agaaagggaaatttaggtcaagaaaagaaggctggagggggagaggtcagtaaggcaggg
atttggctggtgccacttgaaccaagtccagatgcactgcccaaaataacatccctcatc
tggccagcagtgccgtggagaccgagttctgaagcaggcctttgtgaggtcagaggtgga
gttctgggaaaggccagcaaggcccccgtaaaggagccacagctggatcggggcatgggg
ctcggggcccagcggcgtgggagctccgggaccgaggtgcagtcaggagaggccctgggg
gccagcggcagtccaagaggacttttggagccaaggcctgactgggtctcaaacaatggg
gcaggcagtttggggtttcagcagcttccaattgtggacaagataaggaccattgcccag
gctgtctatggagccaaagatatcgaactctgtcctgaggcacaagtcaaaatagatcgt
tacactcagcagggttttggaaatttgcccatctgcatggcaaagaccgatctttctctg
tctcaccaacctgacaaaaaaggtgtgccaagggacttcatcttacctatcagtgatgtc
cgggccagcataggtgctgggttcatttaccctttggtcggaacgcagttcacccaacaa
attcattcactcggccaatgctgcataaggcactcagctcggggctacaggaagccccaa
cctaaagaagctttctctgcttcaggtgcaccactgacatcattgctcggctggactctg
gaaagcaggaaattgctggagcatgtttggggcatcagtgatgtcacccgctacgaatgc
cgggtggggttactggactga

>gi568815589r_40381710|GENSCAN_predicted_peptide_7|408_aa
MNIDAKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHM
IISMDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKT
GTRQGCPLSPLLFNIVMEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSA
QNLLKLISNFSKVSGYKINVQKSKAFLYTTNKQTESQIMSELPFTIASKRIKYLGIQLTR
DVKDLFKENFKPLLKEIKEDTNKWKNIPCSWVGRINLVKKAILPKVIYTFNAIPIKLPMP
FFTELEKTTLKFIWNQKRARITKSILSQKNNAGGITLPDFKLYYKATVTKTAWYWYQNRV
IDQWNRTEPSEITPHIYNYLIFDKPEKNKQWEKDPLFNKWCWENWLAI

>gi568815589r_40381710|GENSCAN_predicted_CDS_7|1227_bp
atgaacattgatgcaaaaatcctcaataaaatactggcaaaacgaatccagcagcacatc
aaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat
atacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatg
attatctcaatggatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaa
actctcaataaattaggtattgatgggacttatttcaaaataataagagctatctatgac
aaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaact
ggcacaagacagggatgccctctctcaccactcttattcaacatagtgatggaagttctg
gccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtc
aaactgtccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgta
caaaaatcaaaagcattcttatacaccaccaacaaacaaacagagagccaaatcatgagt
gaactcccattcacaattgcttcaaaaagaataaaatacctaggaattcaacttacaagg
gatgtgaaggacctcttcaaggagaacttcaaaccactgctcaaggaaataaaagaggat
acaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatctcgtgaaaaag
gccatactgcccaaggtaatttacacattcaatgccatccccatcaagctaccaatgcct
ttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgc
atcaccaagtcaatcctaagccaaaagaacaatgctggaggcatcacactacctgacttc
aaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagtt
atagatcaatggaacagaacagagccctcagaaataacgccacatatctacaactatctg
atctttgacaaacctgagaaaaacaagcaatgggaaaaggatcccctatttaataaatgg
tgctgggaaaactggctagccatatga

>gi568815589r_40381710|GENSCAN_predicted_peptide_8|312_aa
ASKRSKSPLEDATKREFQNCSVKRKVQHCEMNAHITKKFLRLLLSGFYVKASKRSKCPLA
DSAKSRFYKKSVSKLPYRKKCSTLLYKKNVSKQLYQKKRSTMIYKKSVSKLLYEVATKLS
KCPLGDSTKRVFPTCSIKRKVQICELNAHITKKFLRMPLSSTYVKIFPFPTKASKLSKYP
LADFTKSVSKGSMKWSQSASNVHLQIRQKECFKPALSKERFNSDSKGSQCPLADSTKRVF
KPAQSKEMFNPASKLSKCPLADSTKRVFQNCSIENVTERVFENYTIEGKVQLSEMNAHIT
KNLSECFCLIFM

>gi568815589r_40381710|GENSCAN_predicted_CDS_8|939_bp
gcctcaaaacgatccaaaagtccacttgaagatgctacaaaaagagagtttcaaaactgc
tcagtcaaaagaaaggttcaacactgcgagatgaatgcacacatcacaaagaagtttctc
agattgcttctgtctggattttatgtgaaggcctcaaagcgttccaaatgtccacttgca
gattctgcaaaaagcagattctacaaaaagagtgtttcaaaactgccctatcgaaagaaa
tgttcaaccctattatacaaaaagaatgtttcaaaacagctctatcaaaagaaacgttca
acaatgatctacaaaaagagtgtttcaaaactgctctatgaagtggccacaaagctctcc
aaatgtccacttggagattctacaaaacgagtgtttccaacctgctctatcaaaagaaag
gttcagatctgtgagctgaatgcacacatcacaaagaagtttctgagaatgcctctgtct
agtacttatgtgaagatattcccgtttccaacaaaggcctcaaaactgtccaaatatcca
cttgcagattttacaaagagtgtttcaaaaggctctatgaaatggtctcaaagcgcttca
aatgtccatttgcagattcggcaaaaagagtgtttcaaacctgccctatcaaaagaaaga
ttcaactctgactcaaagggctcccaatgtccacttgcagattctacaaaaagagttttt
aaacctgctcaatcaaaagaaatgttcaacccggcctcaaagctctccaaatgtccactt
gcagattctacaaaaagagtgtttcaaaactgctcaatcgaaaatgttacagaaagagtg
tttgaaaactacacaatcgaaggaaaggttcaactctctgagatgaatgcacacatcaca
aagaatttgtcagaatgcttctgtctaatatttatgtga