GENSCAN 1.0	Date run:  6-Nov-116	Time: 21:44:31

Sequence gi568815588r:79457221_79659483 : 202263 bp : 43.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3192   3258   67  2  1   50   74    91 0.599   5.15
 1.02 Term +  10971  11128  158  1  2  109   44    78 0.604   3.60
 1.03 PlyA +  11858  11863    6                               1.05

 2.04 PlyA -  12798  12793    6                               1.05
 2.03 Term -  13031  12976   56  0  2  109   54    37 0.009   0.12
 2.02 Intr -  30978  30889   90  1  0  107   78    -2 0.175   0.67
 2.01 Init -  34257  34197   61  0  1   73   89    26 0.252   0.66
 2.00 Prom -  35466  35427   40                              -1.56

 3.00 Prom +  43431  43470   40                              -6.56
 3.01 Sngl +  49228  49611  384  0  0   63   48   624 0.680  52.09
 3.02 PlyA +  49614  49619    6                             -10.57

 4.06 PlyA -  49626  49621    6                             -10.46
 4.05 Term -  50130  49648  483  0  0   74   37   866 0.925  74.85
 4.04 Intr -  50340  50194  147  0  0   76 -108   231 0.585   2.73
 4.03 Intr -  50565  50368  198  0  0  111 -108   338 0.712  16.05
 4.02 Intr -  51002  50910   93  2  0  100   56    21 0.534   0.26
 4.01 Init -  51190  51185    6  1  0   64   77     8 0.145  -2.25
 4.00 Prom -  52380  52341   40                              -6.16

 5.00 Prom +  53691  53730   40                              -8.76
 5.01 Sngl +  55430  55894  465  1  0   53   36   623 0.955  49.75
 5.02 PlyA +  56509  56514    6                               1.05

 6.04 PlyA -  67183  67178    6                               1.05
 6.03 Term -  67829  67734   96  2  0   43   43    80 0.105  -3.03
 6.02 Intr -  69412  69293  120  1  0  130  113    85 0.977  15.89
 6.01 Init -  74124  74089   36  0  0   56  101    40 0.729   0.11
 6.00 Prom -  74700  74661   40                              -9.26

 7.00 Prom +  74809  74848   40                              -7.66
 7.01 Sngl +  78415  79200  786  0  0   86   47   221 0.962  13.76
 7.02 PlyA +  80014  80019    6                               1.05

 8.05 PlyA -  81367  81362    6                               1.05
 8.04 Term - 100365  99989  377  1  2   85   54   465 0.902  37.70
 8.03 Intr - 100909 100832   78  2  0  101   94    76 0.984   9.02
 8.02 Intr - 101785 101666  120  2  0  114   99    50 0.755   9.17
 8.01 Init - 102263 102092  172  2  1   71   84   180 0.908  13.55
 8.00 Prom - 121541 121502   40                              -5.46

 9.05 PlyA - 122595 122590    6                               1.05
 9.04 Term - 125439 125159  281  1  2    8   48   272 0.071  10.81
 9.03 Intr - 127156 127040  117  2  0   86  110    11 0.121   3.54
 9.02 Intr - 138437 138156  282  0  0   82   43   300 0.086  22.29
 9.01 Init - 138515 138500   16  2  1   47   94    15 0.301  -1.56
 9.00 Prom - 143247 143208   40                              -7.16

10.00 Prom + 143660 143699   40                              -3.56
10.01 Init + 154606 154777  172  0  1   71   84   122 0.363   8.91
10.02 Intr + 155092 155211  120  2  0  114   99    95 0.860  13.67
10.03 Intr + 155969 156046   78  0  0  101   94    75 0.989   8.92
10.04 Term + 156517 156893  377  2  2   87   54   467 0.947  38.10
10.05 PlyA + 158181 158186    6                               1.05

11.03 PlyA - 158736 158731    6                               1.05
11.02 Term - 163848 163755   94  2  1  107   47    33 0.602  -1.60
11.01 Init - 164614 164196  419  1  2   73   53   141 0.722   5.00
11.00 Prom - 164812 164773   40                              -1.06

12.03 PlyA - 166532 166527    6                               1.05
12.02 Term - 175969 175904   66  1  0   74   40   108 0.554   2.54
12.01 Init - 180690 180556  135  0  0   74   87    46 0.491   3.24
12.00 Prom - 181010 180971   40                              -2.46


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 138437 138112  326  0  2   82   48   332 0.807  23.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_1|74_aa
MSFLSLHQKQMLALCFTYSLQNSLSLHCTLAAAPDLHTLEKEGLGFFHFQPSESEGRTLP
NPACPEVKEAPEEG

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_1|225_bp
atgagcttcctgagtctccaccagaagcagatgctggccctatgcttcacgtacagcctg
cagaactctctctccctgcactgcacactggcagcagctccagacctgcacaccctggag
aaggaaggattgggattcttccacttccaacccagtgaatctgagggaagaactctgcct
aatccagcttgtcctgaggtcaaagaagccccagaggaagggtga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_2|68_aa
MGRLYLGQGVNHSLPACSWADIWPYQMGDLLSPFPPIQLDGWHLLLGCYLCTAHPAATVA
RDVAMLTD

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_2|207_bp
atgggccgcttgtatctggggcagggggtgaatcactcactccctgcatgctcctgggca
gatatttggccgtatcagatgggggatctcctctcccccttcccccccatccagttagat
ggctggcatttgctccttggttgttatctttgtactgcccacccagcagccactgtggca
agagatgtggctatgctgactgactga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_3|127_aa
MDEVPEDRNMQKMDKVREDKELQEVDEVPEDQQLQEVDEIPEDLLVQEMDEVREDHQLQE
VDEVPEDLQLQKVDKAPEDQQLQEVDEVPEDLQLQEVDEVPENLPLQEVDEVPEDQQMQE
VDEVPED

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_3|384_bp
atggatgaggtcccggaggacagaaacatgcagaagatggataaggtccgggaggacaag
gagctgcaggaggtggatgaggtcccagaggaccaacagctgcaggaggtggatgagatc
ccagaggacctactggtgcaggagatggatgaggtccgagaggaccaccagctgcaggag
gtggatgaggtcccagaagacctacagttgcagaaggtggataaggccccagaggaccaa
cagcttcaggaggtggatgaggtcccagaagacctacagttgcaggaggtggatgaggtc
ccagagaacctaccactgcaggaagtggatgaggtcccagaggaccaacagatgcaggag
gtggatgaggtcccagaggactga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_4|308_aa
MMDSVEGRLYGIHAAILKPGGGKGARDYHPRHKGLIQLLQLSVLSDLIHLQLSVLSDLIN
LQLSVLWDLIHLLQLAVLPDLIYLQLSVLRDLIHLLQLSLSVLWDLIHLLQLAVLPDLIY
LPLSVLQDLIHLLQLSVLQDLIHLLQLSLSVLPDLIYLQLSVLRDLIHLLQLAVLPDLIY
LQLSVLRDLIHLLQLSVLRDLIHLQLSVLWDLIHLLQLSVLRDLIHLQLSVLWDLIHLLQ
LAVLPDLIYLQLSVLQDLIHLLQLSVLRDLIDLQLSVLWDLIHLLQLSVLPDIIHLQLSV
LQDLIHLL

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_4|927_bp
atgatggactcagttgaagggagactttatggcattcatgctgccattttgaaacctgga
ggagggaaaggtgcaagggactatcacccgaggcataagggcctcatccagctcctgcag
ctgtcagtcctctcagacctcatccacctgcagctgtcagtcctctcagacctcatcaac
ctgcagctgtcagtcctctgggacctcatccacctcctgcaactggcagtcctcccggat
ctcatctacctgcagctgtcagtcctccgggacctcatccacctcctgcagctgtcactg
tcagtcctctgggacctcatccacctcctgcagctggcagttctcccggacctcatctac
ctgccgctgtcagtcctccaggacctcatccacctcctgcagctgtcagtcctccaggac
ctcatccacctcctgcagctgtcactatcagtcctcccggacctcatctacctgcagctg
tcagtcctccgggacctcatccacctcctgcaactggcagtcctcccggacctcatctac
ctgcagctgtcagtcctccgggacctcatccacctcctacagctgtcagtcctccgggac
ctcatccacctgcagctgtcagtcctctgggacctcatccacctcctgcagctgtcagtc
ctccgggacctcatccacctgcagctgtcagtcctctgggacctcatccacctcctgcag
ctggcagtcctcccggacctcatctacctgcagctgtcagtcctccaggacctcatccac
ctcctgcagctgtcagtcctccgggacctcatcgacctgcagctgtcagtcctctgggac
ctcatccacctcctgcagctgtcagtcctcccggacatcatccacctgcagctgtcagtt
ctccaggacctcatccacctcctgtag

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_5|154_aa
MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_5|465_bp
atggcagatgatttggacttcgagacaggagatgcaggggcctcagccaccttcccaatg
cagtgctcagcattacgtaagaatggctttgtggtgctcaaaggctggccatgtaagatc
gtggagatgtctgcttcgaagactggcaagcacggccacgccaaggtccatctggttggt
attgacatctttactgggaagaaatatgaagatatctgcccgtcaactcataatatggat
gtccccaacatcaaaaggaatgacttccagctgattggcatccaggatgggtacctatca
ctgctccaggacagcggggaggtaccagaggaccttcgtctccctgagggagaccttggc
aaggagattgagcagaagtacgactgtggagaagagatcctgatcacggtgctgtctgcc
atgacagaggaggcagctgttgcaatcaaggccatggcaaaataa

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_6|83_aa
MPWPPKVLGLQAVVKVFIVLTPQFLSRDKDQLTKELQKHVKSVTVSCKSPRKMEFVPELR
KTVTGKIKQGELEKRSLVRCNQQ

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_6|252_bp
atgccttggcctcccaaagtgctgggattacaggcggtcgtgaaggtgtttattgtcctg
accccacagtttctgtcccgtgacaaggaccagctgaccaaggagctgcagaagcatgta
aagtcagtgacagtctcatgcaagtccccaaggaagatggagtttgtcccggagctgcgg
aaaactgtcactggaaagattaaacaaggtgaacttgagaaaaggagcttggtcagatgt
aatcagcagtga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_7|261_aa
MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGIMLPD
FKLYYKATVTKTAWYWYRNRDIDQWNRTEPSEIMPRIYNYLIFDKPEKNKQWGKDSLFNK
WCWENWLAICRKLKLDPFLTPYTKIISRWIKDLNVRPKTIKTLEENLGITIQDIDMGKDF
MSKTPKAMATKAKIDKWDLIKLKSFCAAKQTTIRVNRQPTKWEKIFATYSSDKGLISRIY
NELKQIYKKKQTTPSKSGRRT

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_7|786_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcc
cacatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgctacctgac
ttcaaactatactacaaggctacagtaaccaaaacagcgtggtactggtaccgaaacaga
gatatagatcaatggaacagaacagagccctcagaaataatgccacgtatctacaactat
ttgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttatacaaaaattatttcaagatggattaaagacttaaacgttagacctaaaaccata
aaaaccctagaagaaaacttaggcattaccattcaggacatagacatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaactaaagagcttctgcgcagcaaaacaaactaccatcagagtgaacaggcaacctaca
aaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctac
aatgaactcaaacaaatttacaagaaaaaacaaacaaccccatcaaaaagtgggcgaagg
acatga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_8|248_aa
MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
SRLTICEF

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_8|747_bp
atgtggctgtgccctctggccctcaccctcatcttgatggcagcctctggtgctgcgtgc
gaagtgaaggacgtttgtgttggaagccctggtatccccggcactcctggatcccacggc
ctgccaggcagggacgggagagatggtgtcaaaggagaccctggccctccaggccccatg
ggtccgcctggagaaacaccatgtcctcctgggaataatgggctgcctggagcccctggt
gtccctggagagcgtggagagaagggggaggctggcgagagaggccctccagggcttcca
gctcatctagatgaggagctccaagccacactccacgacttcagacatcaaatcctgcag
acaaggggagccctcagtctgcagggctccataatgacagtaggagagaaggtcttctcc
agcaatgggcagtccatcacttttgatgccattcaggaggcatgtgccagagcaggcggc
cgcattgctgtcccaaggaatccagaggaaaatgaggccattgcaagcttcgtgaagaag
tacaacacatatgcctatgtaggcctgactgagggtcccagccctggagacttccgctac
tcagatgggacccctgtaaactacaccaactggtaccgaggggagcctgcaggtcgggga
aaagagcagtgtgtggagatgtacacagatgggcagtggaatgacaggaactgcctgtac
tcccgactgaccatctgtgagttctga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_9|231_aa
MADSPALSLQGSIPAVGEKVFFTNRQLVYLDAISEACARAGSCIAVPRSPEENEAIARFL
KKYNMYAYMALAKGPSPGDFCYLDEAPVDYTNRCPGELIDQGLRGLQGPPGKLGPPGNPG
APGIPGPRSQKGDHGDNSAFSLGKMSGKKLFMTNGERMPFSKVKALCAGLQATVAAPKNA
KENKAIQDVAKDTAFLGITDEATEGQFIYLTGGRLTYSNWKKDEPNDHGSG

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_9|696_bp
atggcagacagcccagccctcagtcttcagggctccataccggcagtgggagagaaggtc
ttcttcacaaacaggcagttggtctatttagatgccattagtgaggcatgtgccagagca
ggcagctgcattgctgtccctaggagtccagaggaaaacgaggccattgcaagatttttg
aagaagtacaacatgtatgcctacatggccctggccaagggtcccagccctggagacttc
tgctacctagatgaggcccctgtggactacacgaaccggtgcccaggggagctcatagat
caagggctcagaggtttgcagggccctcctgggaagttggggcccccaggaaacccaggg
gctcctggaattccaggaccaaggagccaaaaaggagatcatggggacaattcagccttc
tccttggggaaaatgtctgggaagaagcttttcatgaccaacggtgagcggatgcctttc
tccaaagtgaaggctctgtgtgctgggctccaggccacagtggctgcccccaagaatgcc
aaggagaataaggccatccaggatgtggccaaagacactgccttcctgggcatcacagat
gaggcaactgaaggccagttcatatacttgacgggtgggaggctgacctacagcaactgg
aagaaggatgagccaaatgaccacggctcagggtag

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_10|248_aa
MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPM
GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
SRLTICEF

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_10|747_bp
atgtggctgtgccctctggccctcaacctcatcttgatggcagcctctggtgctgtgtgc
gaagtgaaggacgtttgtgttggaagccctggtatccccggcactcctggatcccacggc
ctgccaggcagggacgggagagatggtctcaaaggagaccctggccctccaggccccatg
ggtccacctggagaaatgccatgtcctcctggaaatgatgggctgcctggagcccctggt
atccctggagagtgtggagagaagggggagcctggcgagaggggccctccagggcttcca
gctcatctagatgaggagctccaagccacactccacgactttagacatcaaatcctgcag
acaaggggagccctcagtctgcagggctccataatgacagtaggagagaaggtcttctcc
agcaatgggcagtccatcacttttgatgccattcaggaggcatgtgccagagcaggcggc
cgcattgctgtcccaaggaatccagaggaaaatgaggccattgcaagcttcgtgaagaag
tacaacacatatgcctatgtaggcctgactgagggtcccagccctggagacttccgctac
tcagacgggacccctgtaaactacaccaactggtaccgaggggagcccgcaggtcgggga
aaagagcagtgtgtggagatgtacacagatgggcagtggaatgacaggaactgcctgtac
tcccgactgaccatctgtgagttctga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_11|170_aa
MGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFATYSSDKGL
ISRIYKELKQIYKKKPNNPIKKWAKDMNRHFSKEDIYAGKKHMKKCSSSLAIREMQIKTT
MRYHLTPVRMAIIKKSGNNRDMDETGIIMLSKLSQGQKTKHHMFSLIGGN

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_11|513_bp
atgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactcaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaacctactcatctgataaagggcta
atatccagaatctacaaagaacttaaacaaatttacaagaaaaaaccaaacaaccccatc
aaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcaggcaaa
aaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca
atgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacagg
gacatggatgaaactggaatcatcatgctcagcaaattatcgcaaggacaaaaaaccaaa
caccacatgttctcactcataggtgggaattga

>gi568815588r:79457221_79659483|GENSCAN_predicted_peptide_12|66_aa
MLWMTRREKKKRAVALWEPRPGSSRGQSCDSRYGTLWFLESASFQPTQHEDDEDEDLYDD
PFPLSE

>gi568815588r:79457221_79659483|GENSCAN_predicted_CDS_12|201_bp
atgttgtggatgacaagaagagagaagaaaaaaagagctgtggctctatgggaacccaga
cctgggagctcccgaggccagagctgtgactcccgctatgggaccctatggttcctggag
tctgcaagcttccagcctactcaacatgaagatgatgaggatgaagacctttatgatgat
ccatttccgctcagtgaatag