GENSCAN 1.0 Date run: 7-Nov-116 Time: 01:50:34 Sequence gi568815587r:11251947_11453119 : 201173 bp : 46.54% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.12 PlyA - 3663 3658 6 1.05 1.11 Term - 19344 19198 147 0 0 108 46 261 0.985 21.80 1.10 Intr - 29685 29338 348 0 0 113 3 154 0.032 4.95 1.09 Intr - 41247 41083 165 0 0 112 92 349 0.999 37.86 1.08 Intr - 51771 51686 86 1 2 59 70 67 0.208 1.54 1.07 Intr - 52143 51979 165 1 0 128 49 0 0.094 0.03 1.06 Intr - 63465 63429 37 0 1 101 111 -19 0.021 -0.46 1.05 Intr - 75235 75140 96 1 0 50 109 53 0.469 3.81 1.04 Intr - 79289 79191 99 2 0 91 65 63 0.901 4.61 1.03 Intr - 80885 80748 138 2 0 79 79 261 0.999 24.96 1.02 Intr - 89058 88873 186 0 0 109 75 170 0.880 17.69 1.01 Init - 92481 92437 45 0 0 56 97 -15 0.212 -3.12 1.00 Prom - 94954 94915 40 -8.86 2.02 PlyA - 95556 95551 6 1.05 2.01 Sngl - 101173 99998 1176 1 0 62 43 1023 0.975 91.22 2.00 Prom - 113535 113496 40 -3.86 3.10 PlyA - 116131 116126 6 1.05 3.09 Term - 119366 119274 93 2 0 90 48 27 0.351 -3.27 3.08 Intr - 120683 120569 115 1 1 116 96 277 0.999 31.75 3.07 Intr - 125433 125236 198 2 0 98 103 321 0.999 33.07 3.06 Intr - 127318 127135 184 2 1 79 119 252 0.707 26.25 3.05 Intr - 132620 132577 44 1 2 42 105 65 0.538 1.48 3.04 Intr - 162176 162006 171 1 0 25 97 123 0.068 5.96 3.03 Intr - 173337 173172 166 1 1 63 82 31 0.002 -0.98 3.02 Intr - 180841 180675 167 0 2 93 113 255 0.679 28.10 3.01 Intr - 196990 196798 193 2 1 127 80 281 0.702 29.75 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815587r:11251947_11453119|GENSCAN_predicted_peptide_1|503_aa MVLVQGTRQDHTAHQVWQCGGSVEVLPCSRIAHIERAHKPYTEDLTAHVRRNALRVAEVW MDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTFRWYLVSVYPEMRMYSDIIA YGVAGAIHISANTSASAAQVVPESPDPVVPMETHCTLQNSLKTDLCLDQGPDTENVPIMY ICHGMTPQSSGTCYSVCLLIGFKFLGEVYLALCNSSILTDGQGGRVPEHRPFGPSPGQSH LQRKWVTVSQAAPPRGTSGVIMAAALKGGLSDVESPEGSGAPSLNVYYTSSQQIHVGILS PTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQTLARCPLKGKQRKGCGVFCAG RVSPRVGCLGSAQHLAVGKAWAGPKDELSSQNLQLSGQRHLVRARLLCALVTAPTLILRS VRFIADKRIPISPLAHPSRNQDRNDHLGLQTMKPEGGPIQNRKSKRCLELQENSDLEFGF QLVLQKCSGQHWSITNVLRSLAS >gi568815587r:11251947_11453119|GENSCAN_predicted_CDS_1|1512_bp atggtgttagttcagggaacaaggcaggaccacacagcacaccaggtgtggcagtgtggc gggagtgtggaggtcctgccctgctcacggattgcccacattgagcgagcccacaagccc tacacagaggacctcaccgcccatgtccgcaggaacgctctcagggtggctgaagtctgg atggatgaatttaaaagccacgtctacatggcatggaacataccgcaggaggactcagga attgacattggggacatcactgcaaggaaggctctcaggaaacagctgcagtgcaagacc ttccggtggtacctggtcagcgtgtacccagagatgaggatgtactccgacatcattgcc tatggagtggctggtgcaattcacatctctgcaaacacctcagccagtgctgctcaggta gtacctgagtctccagatcctgttgtccccatggaaacacattgcactctgcagaattct ctgaagactgatttgtgtcttgaccaggggccagatacagagaatgtccccatcatgtac atctgccatgggatgacgcctcagagctcaggaacgtgctattctgtctgtctcctcatt ggttttaaattcctgggagaagtctacttggctctttgtaacagctccattctcactgat ggtcagggtggcagagtcccagagcatagaccatttgggccaagccctggacagagccat cttcagaggaaatgggtcactgtcagccaggcagcccctccaagggggacctcaggtgtc atcatggctgctgcactgaaaggtggcctgtcagatgtggagtccccagaaggctcagga gcaccaagtctgaacgtgtactacacgagcagtcagcagatccatgtgggcattctgagc cccaccgtggatgatgatgacaaccgatgcctggtggacgtcaacagccggccccggctc atcgaatgcagctacgccaaagccaagaggatgaagcttcactggcagttctctcagacc ttggcaaggtgtcccttgaaaggcaagcaaagaaagggctgtggtgtcttctgtgcggga cgtgtttctccaagagttggttgtctggggtctgcacagcacctcgctgttggcaaggcc tgggccggccccaaggatgagctgagcagccagaatcttcagctgagtgggcagcggcac ttggtccgggcccgtttgttgtgcgctttggtcacagcccccaccctgatcctccgatcc gtacggtttatagctgataaacggattcctatcagtcctctggctcatccttccaggaat caggacagaaatgaccatttgggcctgcagacaatgaaaccagaaggaggacccatccag aaccgcaagtctaagcgctgtctggagctgcaggagaatagcgacctggagttcggcttc cagctggtgttgcagaagtgctcgggccagcactggagcatcaccaacgtcctgaggagc ctcgcgtcctga >gi568815587r:11251947_11453119|GENSCAN_predicted_peptide_2|391_aa MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINIT NNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTD FKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWRLGCMLASMIFRKEPFFHGRDNYD QLVRIAKFLGTEDLYGYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDF LDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMPGGSTPVSSANVMSGISSVPT PSPLGPLAGSPVIAAANPLGMPVPAATGAQQ >gi568815587r:11251947_11453119|GENSCAN_predicted_CDS_2|1176_bp atgtcgggacccgtgccaagcagggccagagtttacacagatgttaatacacacagacct cgagaatactgggattacgagtcacatgtggtggaatggggaaatcaagatgactaccag ctggttcgaaaattaggccgaggtaaatacagtgaagtatttgaagccatcaacatcaca aataatgaaaaagttgttgttaaaattctcaagccagtaaaaaagaagaaaattaagcgt gaaataaagattttggagaatttgagaggaggtcccaacatcatcacactggcagacatt gtaaaagaccctgtgtcacgaacccccgccttggtttttgaacacgtaaacaacacagac ttcaagcaattgtaccagacgttaacagactatgatattcgattttacatgtatgagatt ctgaaggccctggattattgtcacagcatgggaattatgcacagagatgtcaagccccat aatgtcatgattgatcatgagcacagaaagctacgactaatagactggggtttggctgag ttttatcatcctggccaagaatataatgtccgagttgcttcccgatacttcaaaggtcct gagctacttgtagactatcagatgtacgattatagtttggatatgtggagattgggttgt atgctggcaagtatgatctttcggaaggagccatttttccatggacgtgacaattatgat cagttggtgaggatagccaagtttctggggacagaagatttatatggctatattgacaaa tacaacattgaattagatccacgtttcaatgatatcttgggcagacactctcgaaagcga tgggaacgctttgtccacagtgaaaatcagcaccttgtcagccctgaggccttggatttc ctggacaaactgctgcgatatgaccaccagtcacggcttactgcaagagaggccatggag cacccctatttctacactgttgtgaaggaccaggctcgaatgggttcatctagcatgcca gggggcagtacgcccgtcagcagcgccaatgtgatgtcagggatttcttcagtgccaact ccttcaccccttggacctctggcaggctcaccagtgattgctgctgccaacccccttggg atgcctgttccagctgccactggcgctcagcagtaa >gi568815587r:11251947_11453119|GENSCAN_predicted_peptide_3|443_aa XAPAKPEEAEAEPFTDSSLFAHWGQELSPEGRRVALKQFQYYGYNAYLSDRLPLDRPLPD LRPSGCRNLSFPDSLPEVSIVFIFVNEALSVLLRSIHSAMERTPPHLLKEIILVDDNSSN DQGSPLLTDPVFMLAMFARNLPYLLPGEGIQLSGPQEMGRRKLSLPTTVSDGQNPRERKV GTSEIYLDLLMNVGDEGKEGMEDAAQVSSLSDGVKDSAVCKMGQTELEEEQVWYYQCENI KKCGLFREELKEKLTEYVDKVNSQKPGFIKVVRHSKQEGLIRSRVSGWRAATAPVVALFD AHVEFNVGWAEPVLTRIKENRKRIISPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNP PKAWWKLENSTAPIRSPALIGCFIVDRQYFQEIGLLDEGMEVYGGENVELGIRAGNWPWT ALAPDLKGRLDTHSEHLTMPAMT >gi568815587r:11251947_11453119|GENSCAN_predicted_CDS_3|1332_bp naggctcctgccaagcctgaggaggcagaggccgagcccttcacagactcctctctgttt gcacactggggccaggagctcagccccgaaggccggcgcgtggccctgaagcaattccag tactacggctacaacgcctacctcagcgaccgcctgcccctggaccggcccctgcctgac ctcagacccagtgggtgccgtaacctctcatttcctgacagcctgccagaggtgagcatc gtgttcatcttcgtcaatgaagcgctttcagtgctgctgcgctccatccactcggccatg gaacgcacgcccccacatctgctcaaggagatcattctggtggatgacaacagcagtaac gaccagggatctcctttgctcacggacccggtcttcatgctggccatgtttgctagaaac ctcccatatctgttgccaggagaaggcatacaactcagcgggcctcaagagatgggcaga aggaaactgtccctcccaacaacagtgtcagatgggcagaacccaagggagagaaaagtg ggtacatccgagatctatttggacttgctgatgaatgtaggggatgaaggaaaggaagga atggaagatgcagctcaggtttctagcttgagtgacggggtgaaggacagtgcagtttgc aagatgggccagacagaattagaggaagaacaggtttggtattaccagtgtgaaaacatt aagaagtgtggccttttcagagaggaactgaaggagaagctgaccgaatatgtggacaag gtgaacagccagaagccaggcttcatcaaagtcgtgcgtcacagcaagcaggaaggcctc atccgctccagggtcagtggctggagggcggccactgcccctgtggtggcactctttgat gcccacgtggagttcaatgtgggctgggctgaacctgtactcacccgcatcaaggagaac cggaagcggatcatctcgccatcctttgataacatcaaatatgacaactttgagatagaa gagtacccgctggctgcccagggctttgactgggagctgtggtgccgctacctaaatccc cccaaggcctggtggaagctggagaactccacagcgccaatcaggagccctgccctcatt ggctgcttcattgtggaccggcagtacttccaggagatcggcctgctggacgaaggcatg gaagtctacgggggcgagaatgtggagcttgggatcagggcaggcaactggccctggacg gcccttgcccctgacctaaaggggagattggacacccacagtgagcatctcacaatgcct gcaatgacctga