GENSCAN 1.0 Date run: 2-Nov-116 Time: 23:35:51 Sequence gi568815587f:74492659_74740763 : 248105 bp : 44.42% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init - 1045 580 466 1 1 95 97 662 0.636 61.61 1.00 Prom - 3395 3356 40 -5.56 2.00 Prom + 4150 4189 40 -10.45 2.01 Sngl + 4377 5426 1050 2 0 36 38 511 0.939 38.06 2.02 PlyA + 6016 6021 6 1.05 3.00 Prom + 8058 8097 40 -3.16 3.01 Init + 11757 11796 40 2 1 76 69 14 0.133 -1.27 3.02 Intr + 17833 18008 176 2 2 94 92 57 0.805 6.36 3.03 Term + 19560 19805 246 2 0 41 48 105 0.627 -2.41 3.04 PlyA + 19938 19943 6 1.05 4.04 PlyA - 20051 20046 6 1.05 4.03 Term - 35629 34248 1382 2 2 67 44 435 0.530 28.46 4.02 Intr - 36425 36177 249 0 0 46 41 194 0.310 7.91 4.01 Init - 49257 49185 73 0 1 71 121 38 0.085 6.63 4.00 Prom - 52880 52841 40 -3.96 5.04 PlyA - 54726 54721 6 1.05 5.03 Term - 58275 58256 20 1 2 104 46 10 0.024 -3.12 5.02 Intr - 70265 70139 127 2 1 68 89 74 0.742 5.75 5.01 Init - 73970 73914 57 2 0 84 83 73 0.995 6.61 5.00 Prom - 76084 76045 40 -5.56 6.00 Prom + 78103 78142 40 -6.66 6.01 Init + 78428 78518 91 1 1 57 81 129 0.945 9.75 6.02 Intr + 78556 78635 80 2 2 49 74 18 0.028 -4.23 6.03 Intr + 99851 100060 210 1 0 68 52 126 0.020 6.11 6.04 Intr + 109989 110026 38 2 2 94 100 29 0.741 1.76 6.05 Intr + 112034 112136 103 2 1 69 94 48 0.927 3.68 6.06 Intr + 118841 118880 40 1 1 70 115 13 0.537 -0.00 6.07 Intr + 120220 120352 133 2 1 81 82 175 0.861 15.90 6.08 Intr + 125879 126146 268 2 1 107 101 241 0.987 24.83 6.09 Intr + 127359 127431 73 2 1 83 54 57 0.745 0.78 6.10 Intr + 132750 132915 166 1 1 63 97 142 0.612 11.62 6.11 Intr + 136559 136665 107 2 2 42 86 102 0.880 5.26 6.12 Intr + 137591 137661 71 0 2 67 89 35 0.695 0.40 6.13 Intr + 143539 143617 79 0 1 80 82 44 0.589 2.12 6.14 Intr + 147906 148075 170 1 2 81 37 203 0.201 14.17 6.15 Intr + 151915 151965 51 0 0 93 87 5 0.048 0.00 6.16 Intr + 168070 168109 40 0 1 111 87 59 0.739 5.90 6.17 Intr + 176119 176194 76 2 1 79 75 91 0.115 5.47 6.18 Intr + 180980 181008 29 2 2 84 96 8 0.141 -1.04 6.19 Term + 182154 182191 38 1 2 122 37 40 0.276 -0.20 6.20 PlyA + 182772 182777 6 1.05 7.00 Prom + 183976 184015 40 -2.46 7.01 Init + 187758 187800 43 2 1 67 84 75 0.729 5.58 7.02 Intr + 199538 199672 135 0 0 68 87 49 0.620 3.34 7.03 Intr + 200811 200915 105 1 0 67 86 54 0.413 3.29 7.04 Term + 201427 201587 161 2 2 76 41 56 0.341 -2.20 7.05 PlyA + 202439 202444 6 -0.45 8.12 PlyA - 202844 202839 6 1.05 8.11 Term - 203927 203851 77 0 2 114 42 137 0.977 9.70 8.10 Intr - 204639 204547 93 1 0 130 97 75 0.994 12.54 8.09 Intr - 210309 210136 174 1 0 85 113 156 0.993 17.71 8.08 Intr - 210841 210647 195 2 0 84 86 166 0.999 15.39 8.07 Intr - 211996 211828 169 1 1 110 81 75 0.789 8.52 8.06 Intr - 215737 215555 183 1 0 58 61 90 0.569 3.28 8.05 Intr - 218333 218191 143 0 2 93 61 111 0.974 8.97 8.04 Intr - 220821 220728 94 0 1 113 106 -23 0.812 1.54 8.03 Intr - 222625 222464 162 1 0 74 21 132 0.833 5.27 8.02 Intr - 226174 226062 113 2 2 63 92 113 0.508 9.30 8.01 Init - 238230 238149 82 0 1 63 105 143 0.885 12.64 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init + 100001 100060 60 1 0 114 52 79 0.926 8.15 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_1|156_aa MRQPAVRLVRLGRVPYAELLGLQDRWLRRLQAEPGIEAPSGTEAGALLLCEPAGPVYTAG LRGGLTPEETARLRALGAEVRVTGRGGLATFHGPGQLLCHPVLDLRRLGLRLRMHVASLE ACAVRLCELQGLQDARARPPPYTGVWLDDRKICAIX >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_1|468_bp atgcggcaacccgccgttcggttggtgcgcctgggtcgggtgccgtacgccgagctactg gggctgcaggaccgctggctgcggcggctgcaggccgagccaggcattgaggccccgtcg gggactgaggcgggcgcgctcctgctctgcgagcccgcggggcccgtgtatacggccggg ctgcgcggcggcctgacgcccgaggaaactgcgcggctacgggccttgggcgccgaggtg cgcgtcacaggccgcggtggcctggccaccttccacggcccgggccagctgctttgccac ccggtactcgacctgcggcgtctcggcctgcgcttgcgcatgcacgtagcgtcgctggag gcgtgcgccgtgcgcctgtgcgagctccagggcctgcaggacgcccgcgcgcggcccccg ccctacactggcgtctggctagacgatcgcaagatctgcgcgatcgnn >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_2|349_aa MSKRPKDTPVNISDKKKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKK QKDKLLKFYAESDEQILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAK IYHNELKIEGNCEYSTGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQDG NFEGFSMSSEKKIMSDLLTYTKNIHPETVSKLEEEDIKDVFNSNNEAPVVHSLSNGEVTK MVLNQDDHDDNDNEDDVNTAEKVPIDDMVKMCDGLIKGLEQHAFITEQEIMSVYKIKERL LRQKASLMRQMTLKETFKKAIQRNASSSLQDPLLGPSTASDASSHLKIK >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_2|1050_bp atgtcaaaaagacctaaagatacccctgtgaatatcagtgataagaaaaagaggaagcat ttatgtttatctatagcacagaaagtcaagttgttggagaaactggacagtggtgtaagt gtgaaacatcttacggaagagtatggtgttggaatgaccaccatatatgacctgaagaaa cagaaggataaactgttgaagttttatgctgaaagtgatgagcagatattaatgaaaaat agaaaaacacttcataaagctaaaaatgaagatcttgatcgtgtattgaaagagtggatc cgtcagcgtcgcagtgaacacatgccacttaatggtatgctgatcatgaaacaagcaaag atatatcacaatgaactaaaaattgaggggaactgtgaatattcaacaggctggttgcag aaatttaagaaaagacatggcattaaatttttaaagacttgtggcaataaagcatctgct ggtcatgaagcaacagagaagtttactggcaagttcagtaatgatgatgaacaagatggt aactttgaaggattcagtatgtcaagtgagaaaaaaataatgtctgacctccttacatat acaaaaaatatacatccagagactgtcagtaagctggaagaagaggatatcaaagatgtt tttaacagtaataatgaggctccagttgttcattcattgtccaatggtgaagtaacaaaa atggttctgaatcaagatgatcatgatgataatgataatgaagatgatgttaacactgca gaaaaagtgcctatagacgacatggtaaaaatgtgtgatgggcttattaaaggactagag cagcatgcattcataacagagcaagaaatcatgtcagtttataaaatcaaagagagactt ctaagacaaaaagcatcattaatgaggcagatgactctgaaagaaacatttaaaaaagcc atccagaggaatgcttcttcctctctacaggacccacttcttggtccctcaactgcttct gatgcttcttctcacctaaaaataaaataa >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_3|153_aa MKSSSPTAQPEVAEKSMCFGDSTAIVRLYIEFSAALSQQKAKPGWAQLTSAYEGSIQTNP SQWGITHLSNRNTLMNINKNQDHPGKHDLTKQTKAPGTNPGKTEISDLSGREFKIAVWKK LKEIQDNMEKEFRILSDKFNREIEIIKKQKFWS >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_3|462_bp atgaagagctcatcccctactgcacaaccagaagtggcagagaaatctatgtgctttgga gacagcacagcaattgtgagactttacattgaattcagtgctgccctctcacagcagaaa gcaaaaccaggctgggctcagctgacatctgcctatgaagggagcattcagaccaaccct agccagtggggtatcacccatctcagcaataggaacacactgatgaacattaacaagaat caagaccatccaggaaaacatgacctcaccaaacaaactaaggcaccagggaccaatcct ggaaaaacagagataagtgacctttcaggcagagaattcaaaatagctgtttggaagaaa ctcaaagaaattcaagataacatggagaaggaattcagaattctatcagataaatttaac agagagattgaaataattaaaaagcagaaattctggagttga >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_4|567_aa MTYGEALHIALRQHCESPQSPSREEIQTTIREYYKHLYANKLENLEGMDKFLNTYTLPRL NQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEGAVLEVLARAIRQEK EIKGIQLGKEEVKLSLFAGDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVEKSQAFLY TNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIP CSWVGRINIMKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQ KNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWSRTEPSEIMPHIYNYLIFDKPDKN KKWGKDSLFNKWCRENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTITTLEENLSN TIQDIGMGKDSMSKTPKAMATNVKIQKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATY SSDKGLISRIYNELKQIYKKKTNNPIKKWVKDMNRHFSKEDIYAAKKHMKKCSPSLAIRE MQIKTTMRYHLTPVRMAIIKKSGNNRC >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_4|1704_bp atgacatatggtgaggctctgcatatagccctccggcagcactgtgaaagcccacagtcg ccttcccgtgaagaaatacaaactaccatcagagaatactacaaacacctctatgcaaat aaactagaaaatctagaaggaatggataaattcctcaacacatacaccctcccaagacta aaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaattgtggcaata atcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccgaattctac cagaggtacaaggaaggagctgtgttggaagttctggccagggcaatcaggcaggagaag gaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctctttgcaggtgac atgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataagc aacttcagcaaagtctcaggatacaaaatcaatgtggaaaaatcacaagcattcttatac accaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttca aagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggag aactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattcca tgctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttat agattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaact actttaaagttcatatggaaccaaaaaagagcccgcatcgccaagtcaatcctaagccaa aagaacaaagctggaggcatcacgctacctgacttcaaactgtactacaaggctacagta accaaaacagcatggtactggtaccaaaacagagatatagatcaatggagcagaacagag ccctcagaaataatgccgcatatctacaactatctgatctttgacaaacctgacaaaaac aagaaatggggaaaggattccctgtttaataaatggtgccgggaaaactggctagccata tgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatgg attaaagacttaaatgttagacctaaaaccataacaaccctagaagaaaacctaagcaat accattcaggacataggcatgggcaaggattccatgtctaaaacaccaaaagcaatggca acaaacgtcaaaattcaaaaatgggatctaataaaactaaagagcttctgcacagcaaaa gaaactaccatcagagtgaacaggcaacctacaacatgggagaaaattttcgcaacctac tcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaa aaaacaaacaaccccatcaaaaagtgggtgaaggacatgaacagacacttctcaaaagaa gacatttatgcagccaaaaaacacatgaaaaaatgctcaccatcactggccatcagagaa atgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaa aagtcaggaaacaaccggtgctag >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_5|67_aa MTSSRVQGLAFAIWTVPAVKDCLVAPKVELSLAVESQGKTCLETNNVSISAKAVYRCHGN VTQIPIV >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_5|204_bp atgaccagcagcagagtccagggcctggcctttgccatctggacagtgcctgcagtgaag gactgtctggtggccccaaaagtagagctgtcactggctgtggagtctcaaggaaagact tgtctggaaacaaataatgtctccatcagtgccaaggcagtttacagatgccatggcaac gtcactcagatccccattgtatga >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_6|620_aa MSGFEKQYKKIRLDKTLDSENEGLELPVPAKLQFDYSLPPAYFGFLLKSGHKEICHQFDP SRAAVVRRLRCRGNDPGPGREQRRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEF VTDQNKIYIIHITFSDPSERMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAV VREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAA AVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASK AAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKE EKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRK KRRRIKLPESDSSEDEETTLRGIENGKRGFRKKDISSTIQSSSGENKRKRKRVLKSKTYL DGEGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKA NRQVRTTHRLPPRLFSQRNLVRCAGFLFTFRHDLVLDMQSHSLDILEHYVEMPIQRLERK PSLTMPSAVHKDLCDYIGLI >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_6|1863_bp atgagtggatttgagaaacagtacaagaaaatccgacttgataagacattggattcagag aatgaagggctggaactgccagtgcctgccaaacttcagtttgattattcattacctcca gcctattttggcttcctactgaaatcaggacacaaggaaatttgtcaccagtttgaccct tcgagggccgccgtagtgcgtcgcctccgttgccggggaaacgacccgggacctgggagg gagcaaagacgtttcccgccggcgggagctgtggctgtgattgagagaggggttagaggc gggtcccagcgctgccgcaccatggcggaccagctttatctggaaaatatagacgagttc gtcacggaccaaaacaagatctatatcatccacataaccttctcagatccttctgaaagg atgctgtatgattatgttgaaaggaaacgaaaagaaaattcaggagcccaactgcatgtt acctacttggtgtctggcagtctcattcagaatggacattcctgccacaaggttgcagta gtgagagaagataaattggaagcagtgaagtccaagctagctgtgactgccagcatccat gtgtacagcatccagaaagccatgctaaaggacagtgggcctctgttcaatactgactat gacatccttaaaagcaacttgcagaactgcagcaaatttagtgctatacaatgtgcagct gccgtccctagagctcctgctgaatcctcttcgtcttccaaaaagtttgagcagtcacat cttcacatgtcaagtgagacacaagccaacaatgagctgaccaccaatggtcatggccca cctgcatccaagcaggtttcccagcagcccaaaggaattatgggaatgtttgcctccaaa gctgctgctaaaacccaagaaaccaacaaggaaacgaaaacagaggctaaagaagtaaca aatgcatctgcagcaggcaacaaggcaccagggaaagggaatatgatgagcaactttttt ggaaaagctgctatgaataaatttaaagtcaatttggactcagaacaagcagtgaaagaa gaaaaaatagtggagcagcctacagtgtctgtcacggaaccaaagctggcaactcctgca ggcctgaaaaaatccagcaaaaaagcagagcctgttaaggtgctgcagaaggaaaaaaaa agggggaagcgagtagcattatctgatgatgagacaaaggaaactgaaaacatgaggaaa aagaggagaagaatcaaacttcctgaatctgatagcagtgaagatgaagaaactactcta agaggaattgaaaatggtaagagaggcttccgaaaaaaggatattagctcaactatacaa agctcaagtggagaaaacaaaagaaaacgaaaacgcgtactaaaatctaaaacttacctg gatggggaaggctgcatagtgactgaaaaagtctacgagagtgaatcctgcacagatagt gaagaggagcttaacatgaagacatcctcagtacacagaccccctgccatgactgtgaaa aaagaacccagagaggaacgaaagggccccaagaaagggactgctgctctgggcaaagcc aacagacaggtgcggaccacccacagattaccacccaggctctttagccagagaaacttg gtaaggtgtgccggcttcctcttcaccttccgccatgatttggtgctggacatgcagtcc cactcactagacattttggagcattacgtggaaatgcccatccagcggttggagaggaaa ccttctctgaccatgccctcagcagttcataaggatctttgtgattatattgggctcatc tag >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_7|147_aa MPEKEEKGTQVLTEGPGPFLCSGTHKDTESYHIKVESGKVDDRDWEGYGEREDEEHWAED LLNPEGCGYLLSLSVCSAETSGFFSQKVSPSETPALATLRGSDAAPSSISSSRLEALKAQ EGQLAPCTVLVLEHKAHPRAAPKLFYE >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_7|444_bp atgccagaaaaagaggagaaaggaacacaggtcctcaccgagggacccggccccttcctg tgctctgggacccataaggatacagaatcctatcacataaaggtagagagtggaaaggta gatgacagagactgggaagggtatggggagcgggaagatgaagagcactgggctgaagac ctattaaacccagagggctgtggatacctcctgagcctcagcgtgtgctcagctgaaact tctggcttcttctcccagaaggtatcaccaagtgagacaccagcactggcaacactgagg ggctcggatgctgctccctcctctatctcctcctccagacttgaggctctaaaagcacag gaagggcaattagctccctgcactgtgttggtgctcgagcataaagcccacccgagagca gcgccgaagctgttttatgaatga >gi568815587f:74492659_74740763|GENSCAN_predicted_peptide_8|494_aa MVPEVRVLSSLLGLALLWFPLDSHARARPDMFCLFHGKRYSPGESWHPYLEPQGLMYCLR CTCSEDVSSGRAETLLVPLIPSAQKKAWHPVDLQQVLSVNESTSTHQRQLSIVESTRALG AHVSCYRLHCPPVHCPQPVTEPQQCCPKCVEPHTPSGLRAPPKSCQHNGTMYQHGEIFSA HELFPSRLPNQCVLCSCTEGQIYCGLTTCPEPGCPAPLPLPDSCCQACKGESVPPSGSTH PPLHSMGLAMDCESREELQRHPQDPCSSDAGRKRGPGTPAPTGLSAPLSFIPRHFRPKGA GSTTVKIVLKEKHKKACVHGGKTYSHGEVWHPAFRAFGPLPCILCTCEDGRQDCQRVTCP TEYPCRHPEKVAGKCCKICPEDKADPGHSEISSTRCPKAPGRVLVHTSVSPSPDNLRRFA LEHEASDLVEIYLWKLVKGIFHLTQIKKVRKQDFQKEAQHFRLLAGPHEGHWNVFLAQTL ELKVTASPDKVTKT >gi568815587f:74492659_74740763|GENSCAN_predicted_CDS_8|1485_bp atggttcccgaggtgagggtcctctcctccttgctgggactcgcgctgctctggttcccc ctggactcccacgctcgagcccgcccagacatgttctgccttttccatgggaagagatac tcccccggcgagagctggcacccctacttggagccacaaggcctgatgtactgcctgcgc tgtacctgctcagaggatgtgagctccgggagggcagaaaccttgttggtcccactaatt cctagtgctcagaagaaggcctggcacccagtagacctgcagcaagtattgagcgtgaat gagtccacgtctacccaccagaggcagctcagcatcgtggaaagtacacgggccctgggc gcccatgtgagttgttaccgcctccactgtccgcctgtccactgcccccagcctgtgacg gagccacagcaatgctgtcccaagtgtgtggaacctcacactccctctggactccgggcc ccaccaaagtcctgccagcacaacgggaccatgtaccaacacggagagatcttcagtgcc catgagctgttcccctcccgcctgcccaaccagtgtgtcctctgcagctgcacagagggc cagatctactgcggcctcacaacctgccccgaaccaggctgcccagcacccctcccgctg ccagactcctgctgccaggcctgcaaaggtgagtctgtccctccatctggcagcactcac ccacccctccactccatgggcctagccatggactgtgagagccgtgaggaactgcagaga catcctcaggatccatgttccagtgatgctgggagaaagagaggcccgggcaccccagcc cccactggcctcagcgcccctctgagcttcatccctcgccacttcagacccaagggagca ggcagcacaactgtcaagatcgtcctgaaggagaaacataagaaagcctgtgtgcatggc gggaagacgtactcccacggggaggtgtggcacccggccttccgtgccttcggccccttg ccctgcatcctatgcacctgtgaggatggccgccaggactgccagcgtgtgacctgtccc accgagtacccctgccgtcaccccgagaaagtggctgggaagtgctgcaagatttgccca gaggacaaagcagaccctggccacagtgagatcagttctaccaggtgtcccaaggcaccg ggccgggtcctcgtccacacatcggtatccccaagcccagacaacctgcgtcgctttgcc ctggaacacgaggcctcggacttggtggagatctacctctggaagctggtaaaaggaatc ttccacttgactcagatcaagaaagtcaggaagcaagacttccagaaagaggcacagcac ttccgactgctcgctggcccccacgaaggtcactggaacgtcttcctagcccagaccctg gagctgaaggtcacggccagtccagacaaagtgaccaagacataa