GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:34:54

Sequence gi568815587f:120146446_120418389 : 271944 bp : 44.90% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1033   1194  162  1  0   78  115   103 0.924  11.09
 1.02 Intr +  22526  22703  178  2  1    6  107    65 0.348   0.12
 1.03 Intr +  23326  23748  423  0  0   69   72   182 0.330   8.76
 1.04 Intr +  24014  24145  132  1  0   62   77    39 0.350   1.04
 1.05 Term +  29077  29256  180  0  0   91   47    96 0.489   3.41
 1.06 PlyA +  29751  29756    6                               1.05

 2.07 PlyA -  31037  31032    6                               1.05
 2.06 Term -  35425  35262  164  2  2   74   42    83 0.179   0.40
 2.05 Intr -  41201  41077  125  1  2   72   58    55 0.168   1.13
 2.04 Intr -  42728  42679   50  2  2   91   87    43 0.345   1.98
 2.03 Intr -  43557  43373  185  1  2   25   99    56 0.144  -0.09
 2.02 Intr -  46897  46848   50  0  2   69  113    12 0.169   0.12
 2.01 Init -  47171  47095   77  2  2   60   50    93 0.423   3.29
 2.00 Prom -  52107  52068   40                              -4.26

 3.00 Prom +  55647  55686   40                              -5.96
 3.01 Init +  64835  65065  231  1  0   60  100   708 0.999  65.46
 3.02 Intr +  79216  79350  135  0  0  105  111   204 0.993  25.16
 3.03 Intr +  80371  80551  181  0  1   38   82   273 0.993  21.14
 3.04 Term +  82423  82697  275  2  2  158   46   437 0.999  42.13
 3.05 PlyA +  83471  83476    6                               1.05

 4.09 PlyA -  85888  85883    6                               1.05
 4.08 Term -  87295  87279   17  2  2   98   48    38 0.312  -0.80
 4.07 Intr -  93070  92951  120  2  0   79   50   113 0.262   7.07
 4.06 Intr -  93841  93689  153  2  0   62   99   110 0.318   9.54
 4.05 Intr -  96424  96344   81  2  0   78   94    11 0.098   0.31
 4.04 Intr -  99467  99339  129  0  0   67   60    78 0.064   3.57
 4.03 Intr -  99578  99547   32  1  2   64  116    17 0.059  -0.13
 4.02 Intr - 107209 107139   71  1  2   84   70    68 0.019   2.58
 4.01 Init - 119513 119421   93  2  0   63  114    82 0.968   8.68
 4.00 Prom - 121348 121309   40                              -4.76

 5.00 Prom + 132574 132613   40                              -1.36
 5.01 Init + 147664 147684   21  0  0   66  100     0 0.175  -1.14
 5.02 Intr + 151820 151945  126  1  0  116   92    80 0.989  12.08
 5.03 Intr + 158585 158767  183  1  0   57   36   144 0.633   6.08
 5.04 Intr + 159199 159340  142  0  1   69   96   263 0.999  25.13
 5.05 Intr + 161034 161215  182  1  2  113   91   113 0.977  13.69
 5.06 Intr + 162980 163141  162  1  0   77  105   220 0.989  22.77
 5.07 Intr + 166194 166327  134  2  2   58   80    61 0.348   1.74
 5.08 Intr + 180996 181195  200  0  2   93   96   114 0.688  11.69
 5.09 Term + 183532 184070  539  2  2  107   42   275 0.951  19.21
 5.10 PlyA + 184172 184177    6                               1.05

 6.04 PlyA - 184758 184753    6                               1.05
 6.03 Term - 190228 189730  499  0  1   80   47   185 0.129   7.60
 6.02 Intr - 237070 237013   58  2  1  113  101    30 0.339   4.74
 6.01 Init - 243391 243367   25  1  1   76  115    13 0.398   2.49
 6.00 Prom - 244811 244772   40                              -2.86

 7.00 Prom + 245077 245116   40                              -4.76
 7.01 Init + 249176 249189   14  1  2   83   61     9 0.071  -2.50
 7.02 Intr + 259673 259696   24  2  0  106  115   -16 0.432   0.04
 7.03 Intr + 261293 261378   86  2  2   48   98    85 0.868   4.96
 7.04 Intr + 262949 263005   57  0  0   95  103    27 0.851   3.76
 7.05 Term + 264355 264371   17  2  2  112   44    33 0.841  -0.30
 7.06 PlyA + 267378 267383    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  99737  99752   16  1  1   84  100    14 0.844   2.58
S.002 Intr + 100004 100072   69  0  0  112  110    75 0.851  11.25
S.003 Init - 143291 143106  186  2  0   61   88   124 0.925   8.76


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_1|358_aa
XLVGISSKNGCLTSPPQSRLSDPSVCRYSFTQFPRAHLAHTALKASVYTTSTSRRLGSAS
REPAQAEALHELCLPSLRRECGQDASKRPGKEGAEGAQPGRWADPEGTWRGTRKVPSAVG
ITISTILMMDLESTGVPCPGSCSLWKAAGAGMPNGLNELLGDSLSLVNAEPTLTVRPNPT
ANNRAALGGSGLPVPGTGSGRGGCRCGSSARSAKLLCLGGRGHWATCSRGCPQAGLPGFL
TARLAGNDAALWHSEPAPTAHRNLQPPSLPQLSLCGPHYPTFCRAQLPYPLYRLSGAMVK
MWKLKGPKMGEEGTELKGRAGEQVQTEAKEPSLAYLLLWKQFRGKELGILEPPECQLG

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_1|1077_bp
nncttagtcggcatttcttccaagaatggctgcctgacctccccgccccagtccaggctg
agtgacccctccgtgtgccgctacagcttcacacagttccccagggcccaccttgcccac
actgcattgaaagcatctgtttacaccacttccaccagcaggcgcctaggaagcgcatcg
agggagcccgctcaagctgaagcgctgcacgagctgtgtcttccttctctccgccgcgaa
tgcgggcaggatgcgagcaaaagacccggcaaagagggcgccgagggggcgcagccgggg
cgctgggcggacccagaggggacatggagaggaacgcggaaggtgccctctgcggtgggc
attactatttccaccatcctcatgatggatctggaatccacgggggtcccctgcccagga
tcgtgcagcctgtggaaggcagcaggcgccgggatgccgaatggattgaatgagcttctc
ggggattccctgagcttggtgaacgcagagcccaccctgacggtcaggcctaaccccacc
gccaataacagagcagccctaggtggaagtgggctgcctgtgcctggcactgggagcggc
agaggcggctgccgctgtggaagtagcgcccgcagtgccaagctcctgtgcctgggagga
cgcgggcactgggcgacctgcagtcggggctgcccccaggcagggctccctggctttctc
acagcgcggctcgcgggaaacgacgctgccctatggcacagtgaacctgccccaactgct
catcggaacctgcagcccccttccctgccccaactgtccctctgcggaccccattaccct
actttctgtcgagcccaactgccctatcctttatacaggctgtcgggggcaatggtgaag
atgtggaagctgaaaggacccaagatgggggaagagggtacagaactcaagggaagggct
ggggagcaggttcagacagaggcaaaagaacccagccttgcttacctgctcctctggaaa
cagtttcgtggcaaagaattaggaattctggagccgcccgaatgccagctgggatga

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_2|216_aa
MWQPLLAKEAEVPLVEEDLGIGQQQPGGLAPACLWGRSGGSQVKEILQHKWLAQGPLACM
HHCPAHKPHGSPLANVESTFLNLYSRPAIIFFLPDWPSGPVPWQGVEWLAAQSMVILAAG
LSPLTVVPLFRSPSLKPHPHSLSYYQEQTPKYFCVSSGKILGASCLYRLPVQHRRLSAQW
LQMVPLYCVGKDQDFFVHSPGPGSEWALAVNYMSEC

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_2|651_bp
atgtggcaacctttgctggccaaggaggcagaggtgcctctggtggaagaagaccttggg
atcggccagcagcagcccggaggactggcccctgcctgcctctggggccgctctggtggt
agtcaagtcaaggagattctgcagcataaatggctggcccagggaccactggcctgtatg
catcactgccctgctcataaacctcatggctccccactggcaaatgttgagtccaccttc
ctcaacctgtattcaaggcctgccatcatcttcttcctgccagactggccttcaggtcct
gtgccttggcagggtgtggagtggcttgcagcacagtccatggtcatccttgctgctggg
ctctcccctctgactgtggtccctctgtttcgaagccctagcctcaagcctcatccccac
tctctttcctactaccaagagcagacaccaaaatatttctgcgtttcctctggaaaaatc
ctgggagcatcctgcctgtaccgactcccagttcagcacaggcgactttcagcccagtgg
ctgcagatggttcctctctattgtgtgggcaaggaccaggacttctttgtccatagccca
ggacctggctcagagtgggctctggctgttaattacatgtccgaatgctga

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_3|273_aa
MRLPGVPLARPALLLLLPLLAPLLGTGAPAELRVRVRLPDGQVTEESLQADSDADSISLE
LRKPDGTLVSFTADFKKDVKVFRALILGELEKGQSQFQALCFVTQLQHNEIIPSEAMAKL
RQKNPRAVRQAEEVRGLEHLHMDVAVNFSQGALLSPHLHNVCAEAVDAIYTRQEDVRFWL
EQGVDSSVFEALPKASEQAELPRCRQVGDHGKPCVCRYGLSLAWYPCMLKYCHSRDRPTP
YKCGIRSCQKSYSFDFYVPQRQLCLWDEDPYPG

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_3|822_bp
atgcgccttcccggggtacccctggcgcgccctgcgctgctgctgctgctgccgctgctc
gcgccgctgctgggaacgggtgcgccggccgagctgcgggtccgcgtgcggctgccggac
ggccaggtgaccgaggagagcctgcaggcggacagcgacgcggacagcatcagcctcgag
ctgcgcaagcccgacggcaccctcgtctccttcaccgccgacttcaagaaggatgtgaag
gtcttccgggccctgatcctgggggagctggagaaggggcagagtcagttccaggccctc
tgctttgtcacccagctgcagcacaatgagatcatccccagtgaggccatggccaagctc
cggcagaaaaatccccgggcagtgcggcaggcggaggaggttcggggtctggagcatctg
cacatggatgtcgctgtcaacttcagccagggggccctgctgagcccccatctccacaac
gtgtgtgccgaggccgtggatgccatctacacccgccaggaggatgtccggttctggctg
gagcaaggtgtggacagttctgtgttcgaggctctgcccaaggcctcagagcaggcggag
ctgcctcgctgcaggcaggtgggggaccacgggaagccctgcgtctgccgctatggcctg
agcctggcctggtacccctgcatgctcaagtactgccacagccgcgaccggcccacgccc
tacaagtgtggcatccgcagctgccagaagagctacagcttcgacttctacgtgccccag
aggcagctgtgtctctgggatgaggatccctacccaggctag

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_4|231_aa
MRKKKGSSLDDEEAPAKETEKEWAGKWKKDRVESPRNDQSWSVHCGGPGPATDKDSVSLN
NPILEEVSPQSGDQVLAPVLSSLEILSFGDPYLLSYSFNWLSEKGMAAVREQGAPPCCRA
PVSGDPLPAQVFVLPAGAPAKPGSPSSSSRPPPPREPLPEPSPPLSRAPLLRPGQHSAPP
GLPHSPVSRPRSQVAVRLYEMMDVEVTSAQAFGDSHLPERGSGLLKVLLIG

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_4|696_bp
atgaggaagaaaaaagggtcaagtttagatgatgaggaggcaccagcaaaagagactgag
aaagagtgggcaggcaaatggaagaaagaccgggtagaaagtccccgcaacgaccaaagc
tggtctgtgcactgtggaggtccaggaccagctacggacaaagactctgtttcccttaat
aaccccatcctggaagaggtcagcccacagtctggggatcaagtcctagctcctgtgttg
tcctccttggagatcctgtcctttggggatccttaccttctctcctactccttcaactgg
ctcagtgagaaagggatggcagcggtcagggagcagggagcccctccttgctgcagagcc
cctgtgtctggtgaccctctgcctgctcaggtctttgtgcttccagccggggcccctgcg
aagccagggtctccttcctccagttcccggccgccgccgccgcgggagccgctgccggag
ccgtcgccgccactgtcgcgcgctccgctgctccggcccgggcaacactcggcgccgcca
ggattgccacactccccagtctcccgccccaggtcccaggttgctgtgaggctctacgag
atgatggatgtggaagttaccagtgcccaggcttttggtgacagccaccttccagagcgg
ggaagcggcttgctcaaagtgcttctcatcggctga

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_5|562_aa
MRLLLSEIKTEDLSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQAFGHPGLPGSS
LEPHLEASQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKL
YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFG
RKRKKRTSIETNIRLTLEKRFQDVSSTFGWARVGYLTQNPKPSSEEISMIAEQLSMEKEV
VRVWFCNRRQKEKRINCPVATPIKPPVYNSRLHSLSTCYMFGTGAPVVNRTRDPCLQCSR
KTDTKQMLFVMKASEKRMALALCLQVLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTH
GVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALML
AHHTLSILGIIMALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHSFTGDVVDFL
FVALFTGVRIGVGACLLFCEMVSPTPKWFVKAGGVAMYAVSWCFMFSIWRFAWRKSIKKY
HAWRSRRSEERQLKHNGHLKIH

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_5|1689_bp
atgaggctactgctttctgaaattaaaaccgaagatctcagtgactccctgcagcagacc
ctctcccatcggccatgccacctgagtcaaggacctgccatgatgtccggaaaccaaatg
tctgggctaaatgccagcccatgtcaggcatttgggcaccctgggctgccaggatcctct
ttagaaccccacctggaagcatcccagcatctcccagtgcccaagcatctacccagctct
ggaggggccgatgagcccagtgacctcgaggagctggagaagtttgccaagaccttcaag
cagaggcgcattaagctgggcttcacacagggagatgtggggctggcgatgggaaagctg
tatggcaacgacttcagccagaccaccatctcacgatttgaggccctcaacctgagcttc
aagaacatgtgcaagctcaagcccctgctggagaagtggctgaatgatgcagagtcctct
ccgtcagacccctcagtgagcacgcccagctcctaccccagcctcagtgaagtatttggt
aggaagagaaagaaacggaccagcatcgagaccaacatccgcctgactctggagaagagg
tttcaagatgtgagcagcaccttcgggtgggcacgggtgggctacctcacacagaaccca
aaacccagctcggaggagatctccatgattgcagagcagttgtccatggagaaggaggtg
gtgagggtctggttctgcaaccgacgccaaaaggagaagcgaatcaactgccctgtggcc
acacccatcaaaccacctgtctacaactcccggctgcattcactgagcacctgctatatg
tttggtactggggctccagtggtgaaccgcacacgtgacccctgcttacagtgtagcagg
aaaacagatactaaacaaatgctatttgtgatgaaggcttcagagaagaggatggcatta
gctctgtgtctgcaggtgctgtgcagcctgtgtggctggctctcgctctatatttctttc
tgccacctgaataagcaccgaagctatgagtggagctgccgcctggtcaccttcacccat
ggagtcctctctataggcctctccgcttatattggcttcattgatggcccatggcctttt
acccacccaggctcacccaatacacctctccaagttcatgtcctgtgtctcaccttgggc
tacttcatcttcgacttgggctggtgcgtctactttcagtctgagggtgccttgatgctg
gctcatcacacattgagtatcttgggcattatcatggcccttgtgcttggggagtctggc
acagaggtcaatgcagtcctctttggaagtgagcttaccaaccccttgctacagatgcgc
tggtttctccgggaaacagggcactatcacagtttcactggagatgtagtggacttcctc
tttgtggctctgttcacaggagtgaggattggtgtgggagcttgcctccttttctgtgaa
atggtctcccccacgcctaagtggtttgtgaaggctgggggagtagcgatgtatgctgtg
tcttggtgtttcatgtttagcatctggcgctttgcatggaggaagagcatcaagaagtac
catgcttggagaagcaggcggagtgaggaacggcagctgaaacacaacggacatctcaaa
atacactag

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_6|193_aa
MDGNGRHYDGTVKLQENKLRVPTDSTLWLPVLGRAAGAGGEVPRPEVTGTRVSQRRGLLP
IPLRPGLFRNRQRRRLLPDAPREGREMPVRPGLEALVREAEAAASPGAGPARRVLEALAG
ARADSGGGRRPWGPRNRGRARGFRFRFWFPGPGRVRRELALPVPRRLYGPLPSDFGKPPH
PGSLRRSGPRSRP

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_6|582_bp
atggatggaaatggacgtcattatgatgggaccgtcaagttgcaagaaaacaaactcagg
gttcccactgattctacattatggctcccggtgctgggacgagccgctggcgccggcgga
gaggtcccgcggcccgaggtgacagggacccgggtctctcagcgccgcggactgctcccc
atccctttgaggcccggactcttccgcaatcgccagaggcggcggctcctccccgacgct
ccccgcgaggggcgggagatgcccgtccggcccggcctggaagccctggtccgggaggcg
gaggcggcggcgtctcccggcgcagggccggctcgccgggttctggaggccctcgcgggc
gcgcgcgcagacagcggaggaggccggcggccgtgggggccgcgcaaccgcgggcgcgcg
cgcgggttccggttccggttctggtttcccggccctggccgcgtccggcgcgagctcgcg
cttcccgtcccccgccgactttatggccccctcccctctgacttcgggaagccgcctcac
ccgggatccctccgccgctcagggccgcgctctcgcccttga

>gi568815587f:120146446_120418389|GENSCAN_predicted_peptide_7|65_aa
MAEGKFPLKKPIRHGSILNRESPTDKKQKVERIASHDFDPTDSSSKKTKSSSEESRSEIY
EYFGY

>gi568815587f:120146446_120418389|GENSCAN_predicted_CDS_7|198_bp
atggcagaaggcaagtttcccctcaaaaaacctataaggcatggaagtattttgaaccga
gagtcaccaacagataagaagcagaaagttgagcgcattgcatcacatgattttgacccc
acagatagctcctccaagaagacaaagtctagttcagaggagagtagatccgagatatat
gagtattttggctactga