GENSCAN 1.0	Date run:  6-Nov-116	Time: 00:27:22

Sequence gi568815586r:7832817_8033904 : 201088 bp : 45.28% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   9760   9799   40                              -2.96
 1.01 Init +  29636  29797  162  1  0   97   90   165 0.827  15.54
 1.02 Intr +  32070  32151   82  2  1   77   76    10 0.495  -2.09
 1.03 Intr +  38194  38508  315  2  0  -22   17   449 0.254  22.84
 1.04 Intr +  39937  40181  245  2  2   61   68   118 0.454   4.32
 1.05 Term +  55196  55306  111  1  0   84   33    47 0.004  -2.64
 1.06 PlyA +  55494  55499    6                               1.05

 2.00 Prom +  56136  56175   40                              -3.36
 2.01 Init +  57933  58034  102  2  0   70  109    85 0.990   9.04
 2.02 Intr +  62699  62923  225  1  0   70   96   110 0.909   8.18
 2.03 Intr +  65449  65535   87  0  0  121   92    80 0.989  11.87
 2.04 Term +  65719  66087  369  0  0   75   49   211 0.935  10.55
 2.05 PlyA +  66715  66720    6                               1.05

 3.10 PlyA -  66782  66777    6                               1.05
 3.09 Term -  88815  88597  219  0  0   98   41   272 0.999  20.54
 3.08 Intr -  90208  90005  204  1  0  137   87   135 0.999  17.70
 3.07 Intr -  93132  93028  105  0  0  120   84   128 0.999  16.01
 3.06 Intr -  97055  96868  188  0  2   78   68   165 0.893  12.91
 3.05 Intr -  97826  97664  163  2  1   63   70    14 0.863  -3.35
 3.04 Intr -  98669  98429  241  1  1   84   78   208 0.997  16.95
 3.03 Intr - 100331 100171  161  2  2  106   72   162 0.998  15.19
 3.02 Intr - 101086 100994   93  1  0  135  113   131 0.999  20.46
 3.01 Init - 103218 103204   15  0  0   89  116     1 0.971   3.44
 3.00 Prom - 103883 103844   40                              -3.36

 4.00 Prom + 104987 105026   40                              -1.46
 4.01 Init + 117595 117644   50  0  2  100   45    90 0.732   4.32
 4.02 Intr + 124174 124256   83  1  2   91   90    17 0.753   1.48
 4.03 Term + 148636 148721   86  2  2   80   41    89 0.190   1.22
 4.04 PlyA + 149354 149359    6                               1.05

 5.00 Prom + 168297 168336   40                              -4.56
 5.01 Init + 168720 168812   93  2  0   62   84    82 0.496   5.58
 5.02 Intr + 177280 177395  116  0  2   43   60   161 0.568   8.05
 5.03 Intr + 182192 182423  232  2  1   62   31    74 0.186  -3.12
 5.04 Intr + 182474 182862  389  1  2  -34   36   455 0.352  21.69
 5.05 Intr + 185963 186062  100  2  1   55   69    97 0.546   4.61
 5.06 Intr + 186554 186615   62  1  2   71   86    20 0.292  -2.37
 5.07 Term + 193544 193679  136  2  1   32   37   139 0.273   0.69
 5.08 PlyA + 194911 194916    6                               1.05

 6.02 PlyA - 195005 195000    6                               1.05
 6.01 Term - 200051 199522  530  0  2   45   47   181 0.611   4.12

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  48397  48771  375  0  0   58   52   210 0.911   8.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_1|304_aa
MPEPSHPLCGLLCGRASPTNAAPCSTAPSPIDHPRAKECEHMARDWQAAPPAAPISSWPA
LYVTLVSAQIYRKEAFPDHTTGGQHDKLASPRKNPMDEYLQGMMSEAPGPINFTTSLTMF
GEKLNGTDPQDVIQNAFTCFNEESSGFIHEDHLQELLTTMGDSFTDEEVDEMYWEAPIDK
KRQVQLAQVLIPAPPGRRDGAAHPPPRPRDCGWAPRLRSTTHLPGRCAPAGPACSRWDPL
TASKSLGFDFEWSVNVVTKRDSVHREPSHHEVGPSLIQEEGRKSPESGLLPPMLSLWFFL
QKST

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_1|915_bp
atgcctgagccttcccaccccctctgtggcctcctgtgcggacgagcctccccgacgaat
gccgccccctgctccacggcgcccagtcccatcgaccacccaagagctaaggaatgcgag
cacatggcgcgggactggcaggcagctccacctgcagcaccgatctcctcatggccggct
ctttatgtcactctggtttctgctcaaatttaccgtaaagaggccttccctgaccacact
acagggggacagcacgacaagctggcttcaccgcggaagaaccccatggatgaatacctg
cagggcatgatgagcgaggccccagggcccatcaacttcaccacttccctcaccatgttt
ggggagaagctgaatggaacagacccccaggatgtgatccaaaacgccttcacctgcttc
aacgaggaatcctcaggtttcattcatgaggaccacctccaggagctgctcaccaccatg
ggtgacagcttcacagatgaagaagtggatgagatgtactgggaggcacccattgataaa
aaaagacaagttcaactagctcaggtcctcattcccgcaccccccggccgcagggacggc
gcggcgcacccacctcccagaccccgcgactgcggttgggccccgcggcttcgctcaacc
acgcacctcccgggccgctgcgcccccgccggccccgcctgcagccgttgggacccacta
actgcctcgaaaagcctaggattcgactttgaatggtccgttaatgtggttacaaaacgt
gactcggttcatcgggagccctcccaccatgaagttggcccctcattgatccaggaagaa
ggcaggaaatctccagaatcagggcttttgccaccaatgttgtctctctggttcttcctc
cagaaatctacctag

>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_2|260_aa
MGEFSSGFYAKSPFSKEQSFWYLPFGQLRASSASDSHDSSTSPKGKQPTTAEKSATKKED
KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
SKRWQKNNWLKNSNGVTQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQT
WCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFN
TPQTMDLFLNYSMNMQPEDV

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_2|783_bp
atgggggaattcagctcaggcttttatgcaaagtcccccttcagcaaagaacaaagcttc
tggtacctgccctttggacagctgcgggcaagctcagcctcggacagccatgattcttcc
accagtcccaaaggcaaacaacccactactgcagagaagagtgccacaaaaaaggaagac
aaggtcccggtcaagaaacagaagaccagaactgtgttctcttccacccagctgtgtgta
ctcaatgatagatttcagagacagaaatacctcagcctccagcagatgcaagaactttcc
aacatcctgaacctcagctacaaacaggtgaagacctggttccagaaccagagaatgaaa
tctaagaggtggcagaaaaacaactggctgaagaatagcaatggtgtgacgcagggatgc
ctggtgaacccgactgggaaccttccaatgtggagcaaccagacctggaacaattcaacc
tggagcaaccagacccagaacatccagtcctggagcaaccactcctggaacactcagacc
tggtgcacccaatcctggaacaatcaggcctggaacagtcccttctataactgtggagag
gaatctctgcagtcctgcatgcagttccagccaaattctcctgccagtgacttggaggct
gccttggaagctgctggggaaggccttaatgtaatacagcagaccactaggtattttaat
actccacaaaccatggatttattcctaaactactccatgaacatgcaacctgaagacgtg
tga

>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_3|462_aa
MGTQKVTPALIFAITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLT
SLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEML
ILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEFILGS
EELWPLLLGFTILPAILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQ
EMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAG
VQEPIYATIGAGVVNTIFTVVSDNYNGMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFS
QGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLGAYVFIIFTGFLITFLAFTFFKVPETR
GRTFEDITRAFEGQAHGADRSGKDGVMEMNSIEPAKETTTNV

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_3|1389_bp
atggggacacagaaggtcaccccagctctgatatttgccatcacagttgctacaatcggc
tctttccaatttggctacaacactggggtcatcaatgctcctgagaagatcataaaggaa
tttatcaataaaactttgacggacaagggaaatgccccaccctctgaggtgctgctcacg
tctctctggtccttgtctgtggccatattttccgtcgggggtatgatcggctccttttcc
gtcggactcttcgtcaaccgctttggcaggcgcaattcaatgctgattgtcaacctgttg
gctgtcactggtggctgctttatgggactgtgtaaagtagctaagtcggttgaaatgctg
atcctgggtcgcttggttattggcctcttctgcggactctgcacaggttttgtgcccatg
tacattggagagatctcgcctactgccctgcggggtgcctttggcactctcaaccagctg
ggcatcgttgttggaattctggtggcccagatctttggtctggaattcatccttgggtct
gaagagctatggccgctgctactgggttttaccatccttcctgctatcctacaaagtgca
gcccttccattttgccctgaaagtcccagatttttgctcattaacagaaaagaagaggag
aatgctaagcagatcctccagcggttgtggggcacccaggatgtatcccaagacatccag
gagatgaaagatgagagtgcaaggatgtcacaagaaaagcaagtcaccgtgctagagctc
tttagagtgtccagctaccgacagcccatcatcatttccattgtgctccagctctctcag
cagctctctgggatcaatgctgtgttctattactcaacaggaatcttcaaggatgcaggt
gttcaagagcccatctatgccaccatcggcgcgggtgtggttaatactatcttcactgta
gtttctgataactataatgggatgagctttgtctgtattggggctatcttggtctttgta
gccttctttgaaattggaccaggccccattccctggtttattgtggccgaactcttcagc
cagggcccccgcccagctgcgatggcagtggccggctgctccaactggacctccaacttc
ctagtcggattgctcttcccctccgctgctcactatttaggagcctacgtttttattatc
ttcaccggcttcctcattaccttcttggcttttaccttcttcaaagtccctgagacccgt
ggcaggacttttgaggatatcacacgggcctttgaagggcaggcacacggtgcagataga
tctggaaaggacggcgtcatggagatgaacagcatcgagcctgctaaggagaccaccacc
aatgtctaa

>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_4|72_aa
MTRCILELLAQARSGLQCWEYTDKKDVQAGTVAHTYNPSSLGGREQRQGWKLENLGISKD
YGTDCATDFAKT

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_4|219_bp
atgactcgctgcatcctagagctcctggctcaagcgaggtcggggctgcaatgctgggaa
tatacagataaaaaagatgttcaggccggcacagtggctcacacgtataatcctagcagt
ttgggaggccgagaacaaagacaaggttggaagttagaaaacctgggtatcagcaaagac
tatggtacagactgtgctacagacttcgcaaaaacttaa

>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_5|375_aa
MIGKLVTKKFEEDMQMDLSEWSKTVKIFVYHKLLPPPPAFGDHDPDQSAAINVEARPSTS
KKIVTRSRLSRPAEMLLPLPTVFPQMRLLSRVLAPHLTRAYAKDVKFGADARALMLQGVD
LLADAVAVTMGPKGRTVIIEQSWGSPQIQIRAKLVQDIANNTNEEAGNGTTSATVLARSI
AKEGFKKISKGANPVEIRKGVMLAVDAVIAELRKQSKFVTTPEEIAQVATTSANGDKEIG
NIISNAMKKVGRKGVITVKDGKTLNDELEIIESGWASRWDPLTASKSLGFDFEWSVNVVA
KRDSVHRALPGKAPADSTKVFWRDCSPPTQGFQKASVHADFGGSKQETIDPVQEMTLFEG
NEGVADFPRFPSVPF

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_5|1128_bp
atgattggaaaattggtgacaaagaaatttgaggaagacatgcagatggacctctctgag
tggtcaaaaactgtgaagatatttgtataccataaattgctaccaccacccccagccttc
ggcgaccacgaccctgatcagtcagcagccatcaacgttgaggcaagaccctccaccagc
aaaaagattgtgacacgctcaaggctcagccgccccgcagaaatgcttcttccgttaccc
acagtctttccccagatgagactgctgtccagggtactggcccctcatctcactcgggct
tatgccaaagatgtaaaatttggcgcagatgcccgagccttaatgcttcaaggtgtagac
cttttagccgatgctgtagctgttacgatggggccaaagggaagaacagtgattattgag
cagagctggggaagtccccaaatacaaattagagctaaacttgttcaagatattgctaat
aacacaaatgaagaggctggaaatggcaccacctctgctaccgtactggcacgctctatt
gccaaggagggcttcaagaagattagcaaaggtgctaatccagtggaaatcaggaaaggt
gtgatgttggctgttgatgctgtaattgctgaacttagaaagcagtctaaatttgtgacc
acccctgaagaaattgcacaggttgctacaacttctgcaaacggagacaaagaaattggc
aatatcatctccaatgcaatgaaaaaggttggaagaaagggtgtcatcacagtaaaggat
ggaaaaacactgaatgatgaattagaaattattgaaagtggctgggcgagccgctgggac
ccactaactgcctcgaaaagcctaggattcgactttgaatggtccgttaatgtggtcgca
aaacgtgactcggttcatcgggcgctccctggtaaggcccctgcagacagcacgaaggtg
ttttggagagattgttctcccccgacccaaggattccagaaagccagtgtacacgcagac
ttcggaggcagtaaacaggaaaccatcgatcccgtgcaggaaatgaccttgtttgaaggc
aacgaaggtgtcgcggatttccctcgttttccttcagttcctttctaa

>gi568815586r:7832817_8033904|GENSCAN_predicted_peptide_6|176_aa
XPSCRVRSLRRVGLPALPPLGLRPVWAPGEPEGGQTVSGLGAGSGSARLRCRPRLLPGLR
AALRAPPPPPPAGRCRHRLPARVKEEPGDAEPRAAPSREPRYPVCAPPGEPRPLSRRRGI
SPPSPTCGRVAPGVRRLPGMTTHCSPSGESLVRTVYRQFQLTPQLRRFILLNSVYR

>gi568815586r:7832817_8033904|GENSCAN_predicted_CDS_6|531_bp
nggccgtcctgtcgggtccgctcccttcggcgcgtggggctccccgcgctgccaccgctc
gggctccgaccagtctgggctcccggggagccagaaggcgggcagacagtgtcagggctc
ggcgcgggctcgggctcggctcggctccgctgcaggccccggctcctccccggcctccgc
gccgcgctccgcgcccctccccctcccccgcccgccggccgctgccgccaccgcctcccg
gcgcgggttaaggaggagccgggagacgccgagccgcgggcagcgccgagccgcgagcct
cgctacccggtgtgcgctccgcctggagagccacggccgctctcacgccggcgagggatc
tcgccgccctcgcccacctgcggccgcgtggctccgggagttcgccgtctacccgggatg
acaactcactgctccccgtcgggagagtccctagtgcgcaccgtataccgtcaattccag
ctgacaccccaactccggcgtttcattctgttaaactccgtatacagatga