GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:26:37

Sequence gi568815586r:68452998_68653845 : 200848 bp : 40.07% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3116   3172   57  1  0  123   17    74 0.300   1.96
 1.02 Intr +   4045   4185  141  0  0   83   49    70 0.102   2.23
 1.03 Term +  14949  15173  225  2  0   94   42   106 0.052   2.40
 1.04 PlyA +  17963  17968    6                               1.05

 2.00 Prom +  18889  18928   40                              -7.35
 2.01 Init +  20744  21710  967  1  1   97   81   724 0.052  66.14
 2.02 Intr +  22684  22796  113  2  2   79   47     0 0.021  -5.82
 2.03 Intr +  24326  24471  146  1  2   74   80    80 0.030   3.96
 2.04 Intr +  34643  34891  249  2  0   13   94   298 0.151  18.53
 2.05 Intr +  40793  40891   99  2  0   52   90    68 0.101   1.71
 2.06 Intr +  58274  58403  130  2  1   31  103    56 0.010   1.18
 2.07 Intr +  61959  62163  205  2  1   70   96    91 0.020   5.95
 2.08 Intr +  79726  79781   56  2  2   88   67    86 0.077   4.28
 2.09 Term +  91361  91456   96  1  0  103   53    91 0.329   4.09
 2.10 PlyA +  94513  94518    6                               1.05

 3.02 PlyA -  95677  95672    6                               1.05
 3.01 Sngl - 100885  99998  888  1  0   60   43   948 0.946  83.32
 3.00 Prom - 101618 101579   40                              -7.85

 4.00 Prom + 105935 105974   40                              -6.85
 4.01 Init + 107541 107751  211  2  1   91   55   218 0.856  17.79
 4.02 Intr + 121517 121571   55  0  1   64   66    65 0.001  -0.98
 4.03 Intr + 136879 137053  175  1  1   54   97    91 0.028   5.62
 4.04 Intr + 142885 142990  106  0  1   78   36    53 0.272  -2.03
 4.05 Term + 143274 143587  314  1  2   78   36   163 0.582   4.28
 4.06 PlyA + 144252 144257    6                               1.05

 5.03 PlyA - 146793 146788    6                               1.05
 5.02 Term - 158113 157895  219  1  0   74   45   213 0.602  11.66
 5.01 Init - 164968 164966    3  1  0  108   81     0 0.290   1.35
 5.00 Prom - 167532 167493   40                              -6.05

 6.02 PlyA - 167600 167595    6                               1.05
 6.01 Sngl - 174343 173873  471  1  0   54   55   431 0.368  30.27
 6.00 Prom - 179995 179956   40                              -3.35

 7.02 PlyA - 180005 180000    6                               1.05
 7.01 Term - 189944 189517  428  0  2   -5   38   482 0.394  28.38

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  20744  21724  981  1  0   97   49   727 0.946  66.25
S.002 Init + 124682 124813  132  1  0   65  105   129 0.979  12.49
S.003 Term + 134413 134540  128  2  2   57   43   145 0.917   4.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_1|140_aa
MIPFTSCPGQVPVPEGHPRSSPFSTTSGPHLQAWQQADPARTREAYAVPLVEHMDTFEVL
PETVFRGWSWERQRETARGFFLSSTLASIGALWPQRMLELTLPIMGAFVGSTEVRPLESS
QKPLDVGNACLLASHSSLWP

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_1|423_bp
atgatacccttcacttcctgtccaggtcaggttcctgtaccggagggccaccccaggtct
tctcctttcagcaccacatctggtcctcacctccaagcatggcagcaggctgaccctgct
aggactagagaagcatatgccgtaccccttgttgagcacatggatacctttgaggtcctt
cctgaaacagtgttcaggggctggagctgggaaagacagagagaaacagcaagaggtttc
ttcctgtcaagcactcttgcgagcattggtgctctctggcctcagaggatgttggagctg
acccttcctatcatgggtgcttttgtgggatccacagaggtacgcccactggagtcttct
caaaagccccttgatgtgggcaatgcctgtcttctggcttctcattcctctctgtggccc
tag

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_2|686_aa
MADSRGRVLQDYRKKLLEHKIDGRLNELREQLKELTKQYEKSENDLKALQSVGQIVGEVL
QQLTEAKFIVKATNGPRYVVGCRRQLDKSKLKPGTGVALDMTTLTIMRYLPREVDPLVYN
MSHEDPWNVSYSEIGGLSEQIWELREVIELALTNPELFQWVGIMPPKCCLLHGPPGMGKT
LLAQAVASQLDYNFLKVVSSSIVDKYIGESACLIREMFNYPRNHKPCIIFMDEIDAIGGC
PFSEGTSADREIQSTSVKLLNQMDGFDTLHRVKMIMTTNRPDTLDPALLHPGRLDRNIHI
DLPYEQARLDLLKIHAGPITKHAHQLSSMFVYFMCGPRRFFFQCGPGKPKDWTLMQYILK
SISRIQPHFALTSIIVLIQATIISHLDYYNSCLTGLPASTMPLTTKQSETFRRPFAICNL
GVKQHGCSQPRPCGSRASQAHPGCLVTVLSIRAIIVIMSSLLLCPGTAVIIYRTQTHRVL
SGAVREPPKRARKYRQYWKLRLDYFTAVHKQSLNLALRLKERFYRPCHLLTCVTFGAFLT
LSVPHILNCERGDIMMIKRVNTRRAGHMHLDLSCGWLGQSQEARQPCNQITDKGQMSVTE
AKIIQNLDSKGRSKTKRISRMEEPSMYWSQRKSKCQETYPTQSEQQAEKQGSENQGGNVA
FLGDLKGCSKLKNFQELINQSALVHP

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_2|2061_bp
atggcggactctagaggtagggtgcttcaggactaccgcaagaagctgcttgagcacaag
atcgacggccgtcttaacgagttaagggaacaattaaaagaacttaccaagcagtatgaa
aagtctgaaaatgatctgaaggccctacaaagtgttgggcagattgtgggtgaagtgctt
caacagttaactgaagcaaaattcattgttaaagctacaaatggaccaagatatgttgtg
ggttgtcgtcgacagcttgacaaaagtaagctgaagccaggaacaggagtcgctttggat
atgactacactaactatcatgagatatttgccaagagaggtggatccactggtttataac
atgtctcatgaggacccctggaatgtttcttattctgagattggagggctatcggaacag
atctgggaattaagagaggtgatagaattagctcttacaaacccagagttatttcagtgg
gtaggaataatgcctccaaaatgctgtttgttacacggaccaccaggtatgggaaaaaca
ctcttggcacaagctgttgctagccagctggactacaatttcttaaaggttgtatctagt
tctattgtagacaagtacattggtgaaagtgcttgtttgatcagagaaatgtttaattat
cccaggaaccataaaccatgcatcatttttatggatgaaatagatgctattggtggttgt
ccgttttctgagggtacttcagctgacagagagattcagagtacttcagtgaagttactg
aatcaaatggatggatttgatactctgcacagagttaaaatgatcatgactacaaacaga
ccggatacactggatcctgctttgctgcatccgggaagattagatagaaacatacatatt
gatttgccatatgaacaagcaagattagacctactgaaaatccatgcaggtcccattaca
aagcatgctcatcagctatcgtcaatgttcgtgtattttatgtgtggcccaagacgattc
ttcttccaatgtggccccgggaagccaaaagattggacactcatgcaatatattctcaag
tctatatccaggatccaaccacattttgcccttacctccatcatcgtcctgatccaggcc
accatcatctctcacctggattattacaacagctgtctaactggcctccctgcctccacc
atgcctctcaccacaaagcagtctgaaactttccgcagacccttcgcgatctgcaatctg
ggggtgaagcaacatggatgcagccagccaaggccctgtggaagtcgtgcttctcaagca
caccctggatgtctggtcactgtcctcagcatccgggccatcattgtcatcatgtcctcc
ttgttgctgtgcccaggcactgcagtcatcatctaccgcacgcagacccatcgggtcctc
agtggggctgtccgcgagcctcccaagagggccagaaaatatcgccagtactggaagcta
agattggactattttactgctgtacataagcaaagccttaatctggctttaaggctcaaa
gaaagattctacaggccctgtcatttacttacctgtgtgacttttggagcttttcttacc
ctctctgtgcctcatatcctcaactgtgaacggggggatataatgatgattaaacgagtt
aacacacgcagagctgggcacatgcatttggatttgagttgtggttggctgggccaaagc
caggaagccaggcagccttgcaatcagatcacggacaaaggccagatgtcagtcactgaa
gcaaaaataatacagaatcttgattccaaaggtagatccaaaactaagaggataagcagg
atggaagagccatccatgtactggagtcaaagaaagtccaaatgccaggaaacttaccca
acccagtctgagcaacaagctgaaaagcagggttctgagaaccagggaggaaacgtagcg
ttccttggagacctgaagggatgcagtaagcttaagaattttcaagagcttatcaatcag
tcagcccttgttcatccctga

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_3|295_aa
MSGALDVLQMREEDVLKFLAAGTHLGGTNLDFQMEQYIYERKSDGIYIINLKRTWEKLLL
AAHAIVAIENPADVSVISSRNTGQTAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAYSVGLMWWMLAR
EVLCMLGTISCEHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
IQPEVADWSEGVQVPSVPIQQFPTEDWSSQPAMEDWSAAPTAQATEWVGATTDWS

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_3|888_bp
atgtccggagcccttgatgtcctgcaaatgagggaggaggatgtccttaagttccttgca
gcaggaacccacttaggtggcaccaatcttgacttccagatggaacagtacatctatgaa
aggaaaagtgatggcatctatatcataaatctgaagaggacctgggagaagcttctgctg
gcagctcatgctattgttgccattgaaaaccctgctgatgtcagtgttatatcctccagg
aatactggccagacggctgtgctgaagtttgctgctgccactggagccactccaattgct
gggcgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccacgg
cttcttgtggttactgaccccagggctgaccaccagcctctcacggaggcatcttatgtt
aacctacctaccattgcgctgtgtaacacagattctcctctgcgctatgtggacattgcc
atcccatgcaacaacaagggagcttactcagtgggtttgatgtggtggatgctggctcgg
gaagttctgtgcatgcttggcaccatttcctgtgaacacccatgggaggtcatgcctgat
ctgtacttctacagagatcctgaagagattgaaaaagaagagcaggctgctgctgaaaag
gcagtgaccaaggaggaatttcagggtgaatggactgctccagctcctgagttcactgct
attcagcctgaggttgcagactggtctgaaggtgtacaggtgccctctgtgcctattcag
caattccctactgaagactggagctctcagcctgccatggaagactggtctgcagctccc
actgctcaggccactgaatgggtaggagcaaccactgactggtcttaa

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_4|286_aa
MDKSRGDIAADRWRTLQEEGSHLAGKLPAGKNAGGCLSWEEFPSPLQAQKPGNEWEAAGV
GQASQGKWPRNSWAPQVQAQMRWESMDPSPRGLGRKNGFHGPGPVPCCPEQPHSLGTLLP
ASWLLRLPQWLTGNQVKLTLLLQRVQAGPQSAPSLLRFQDLRPDLLTSLSPRALSTSDTH
LSSSSFFPLAERRLEKKEPPLHSIRDSSSSKVISERAAAPKVKLAPVIVTSGLFERRSMG
FEAKSTYIQNSFERRSMSFEAKSTYIQNSGSLHTQASSEPLSLPLK

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_4|861_bp
atggacaagtctagaggcgatatagctgcagacaggtggaggacactgcaagaggaaggc
tcccatttagcaggaaaactgccagctgggaagaatgctggtggctgcctgagttgggaa
gaattcccaagccctctgcaagctcagaagccaggaaatgaatgggaagcagctggagtg
ggccaagcaagtcaaggcaaatggcccagaaattcatgggcccctcaagtccaagcacag
atgcgttgggaatctatggatcccagtcccagaggcctaggaaggaagaatggtttccat
gggccaggtccagtgccctgctgccctgagcagcctcacagcctcgggacactgcttcct
gcatcctggctgctccggctcccacagtggctaacagggaaccaggttaagctcacactg
ctgcttcagagggtgcaagccggtccacaatctgccccgtcactgctcaggtttcaggac
ctccggccagacctgctgacctctctgagccctagggcactgagcactagtgacactcac
ttgtcaagcagcagcttctttcccttagcagagcgcaggctagagaagaaagagccacca
ctacattccatcagagacagcagtagttccaaagtgatttcagaacgtgcagcagctcca
aaagtgaagctagctcctgtgatagtaacaagtggcttgtttgagagaaggagcatgggc
tttgaagccaaatcaacctatattcaaaatagctttgagagaaggagcatgagctttgaa
gccaaatcgacctatattcaaaattctggctctctgcacacacaggcaagttctgagcct
ctttctttgcctttaaaatag

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_5|73_aa
MPAPGPARPPPRLPSAATHSLCEPLTLSPGPCSQRRPALPPGRYSRRHGGPAAAAPLRLV
YTPESGRGLAMSP

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_5|222_bp
atgccggcgcccggccccgcgcggccgccgccgcggcttccctcagcggccacgcactca
ctctgcgaacctctcacgctgtcaccgggtccctgcagccagcgtcgccccgcgctcccc
ccgggtcgctactctaggcgccacggcggtcctgccgctgccgcgccgctccggctggtt
tacacgcctgaatctgggcgaggtttggcgatgtcgccttga

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_6|156_aa
MGGPSVQWLQTAASLVVYAACVLYCMGCSKGPWRQSFQMDVHVSDLALPQCRFQTGMRGA
FGKPQGTVARVHTGQVIISIHTKLQNKEHVIEALRRAKFKFSGRQKIHISKKWGFTKFNA
NEFEDMVTEKRLIPDGCRVKYISNRGPVDKWRALHS

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_6|471_bp
atgggggggcccagtgtgcaatggctgcaaacagcagcttccttggtagtgtatgcagcc
tgtgtgttgtattgtatgggttgctctaagggaccctggagacagtcctttcagatggat
gttcatgtttctgaccttgcactaccccagtgtaggttccaaacaggcatgcgaggtgcc
tttgggaagccccagggcactgtggccagggttcacactggccaagttatcatctccatt
cacaccaagctgcagaacaaggagcatgtgattgaggccctgcgcagggccaagttcaag
ttttctggccgccagaagatccacatctcaaagaagtggggcttcaccaagttcaatgcc
aatgagtttgaagacatggtgactgagaagcggctcatcccagatggctgtcgggtcaag
tacatttccaatcgtggccctgtggacaagtggcgggccctgcactcatga

>gi568815586r:68452998_68653845|GENSCAN_predicted_peptide_7|142_aa
XIIPQNQKAIASFLKSWNETLTSRLAALPENPPVIDWAYYKANVAKAGLVDDFKKFNALK
VPVPEDKYTAQVDAEEKDVKSCAEWVSLSKARIVEYEKQMEKMKNLIPFDQMTTEDLNEA
FPETKLDEKKYPYWPHQLIENL

>gi568815586r:68452998_68653845|GENSCAN_predicted_CDS_7|429_bp
nagatcataccccagaaccaaaaggccattgctagtttcctgaaatcctggaatgagacc
ctcacctccaggttggctgctttacctgagaatccaccggttatcgactgggcttactac
aaggccaacgtggccaaggccggtttggtggatgactttaagaagtttaatgccctgaag
gttcccgtgccagaggataaatatactgcgcaggtggatgccgaagaaaaagatgtgaaa
tcttgtgctgagtgggtgtctctctcaaaggccaggattgtagaatatgagaaacagatg
gagaagatgaagaacttaattccatttgatcagatgaccactgaggacttgaacgaagct
ttcccagaaaccaaattagacgagaaaaagtatccttattggcctcaccaactaatcgag
aatttataa