GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:33:53

Sequence gi568815586r:42578873_42779124 : 200252 bp : 40.84% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  10287  10502  216  1  0   38   44   300 0.322  18.15
 1.02 Intr +  11476  11657  182  2  2  103    5   171 0.037   8.97
 1.03 Intr +  12114  12276  163  2  1   66   20   142 0.069   3.83
 1.04 Intr +  23141  23169   29  0  2   93   97   -10 0.001  -2.68
 1.05 Intr +  29316  29424  109  2  1  -34  131   125 0.071   3.54
 1.06 Intr +  31958  32157  200  0  2   49   66   123 0.625   4.35
 1.07 Intr +  35287  35403  117  0  0   63   54   108 0.420   4.64
 1.08 Term +  48166  48297  132  0  0   69   44   144 0.162   5.21
 1.09 PlyA +  49056  49061    6                               1.05

 2.04 PlyA -  50376  50371    6                               1.05
 2.03 Term -  58296  57874  423  0  0   43   31   317 0.508  15.81
 2.02 Intr -  62044  61964   81  1  0   79   50    71 0.373   1.32
 2.01 Init -  64304  64110  195  2  0   27   68   138 0.407   4.68
 2.00 Prom -  74980  74941   40                              -4.75

 3.03 PlyA -  75264  75259    6                              -0.45
 3.02 Term -  76529  75730  800  0  2   66   54   367 0.903  23.53
 3.01 Init -  78940  78886   55  1  1   60  121    18 0.412   3.80
 3.00 Prom -  97903  97864   40                              -4.75

 4.00 Prom + 102354 102393   40                              -3.75
 4.01 Init + 120185 120255   71  1  2   70  108    53 0.103   6.07
 4.02 Intr + 129860 130307  448  2  1   45   36   215 0.411   4.42
 4.03 Intr + 130414 130672  259  0  1   78    3   211 0.317   7.71
 4.04 Term + 132105 132574  470  1  2   30   48   182 0.530   2.55
 4.05 PlyA + 132661 132666    6                               1.05

 5.03 PlyA - 135092 135087    6                               1.05
 5.02 Term - 139378 139211  168  1  0   49   44   130 0.297   1.60
 5.01 Init - 143711 143532  180  2  0   70   41   135 0.318   6.24
 5.00 Prom - 144659 144620   40                              -6.15

 6.02 PlyA - 144828 144823    6                               1.05
 6.01 Sngl - 146058 145660  399  0  0   88   44   395 0.977  31.11
 6.00 Prom - 151749 151710   40                              -5.85

 7.04 PlyA - 152053 152048    6                               1.05
 7.03 Term - 155050 154967   84  1  0   51   41    99 0.353  -1.83
 7.02 Intr - 155896 155787  110  2  2   34   86   121 0.914   5.58
 7.01 Init - 157221 157113  109  0  1   34  105   115 0.807   8.23
 7.00 Prom - 174187 174148   40                              -2.85

 8.03 PlyA - 175049 175044    6                               1.05
 8.02 Term - 197677 197490  188  2  2   76   44   216 0.969  12.67
 8.01 Intr - 198417 198394   24  1  0  135   93     7 0.866   2.98

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  11476  11696  221  2  2  103   42   207 0.903  13.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_1|382_aa
XPVSTPEKTKGRVGCDAANRSHAESLCGALAMLQPISAFPVYTAQQTDYDLLPDLLRHRP
SLGVTDSGGASEGWSESLPRNRRSDLSEQEAKVQPLVRSLPRLDGPGRLHENSVWGIVPA
KTSAHRNVQSLTQKNQNCQSQNFSEHQVFSIFVGNKAKEYSAKMEPMKRECKEIKANGGG
NCLNPGKCTVLSRCQDKIKNPLLGWSGSGPLSGNTTIKENGSGAFGELFGKKSARHIGSP
SPHQTQEPSWLHPVDPAPGPQVELPASPAPCARTPQPLGGRWDWAPWSRGSTRQGGSGRT
MGTLQNEDPTPHWGAEAYMPSQDDRKNGDLVHGQKQVVMVALMMAKVPGVTQRCSAQWWE
QGSQLGLHLLRSLPSCEGALGG

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_1|1149_bp
naacctgtttccacgccggagaaaaccaagggaagagttggttgtgatgcagcaaacagg
agccatgcggagagcctctgcggagccctggcgatgctgcagccaatatctgctttccct
gtctacacagcccaacaaaccgattatgaccttctccctgatcttctgcgacaccgaccc
agtctgggtgtcacagactccggcggtgccagcgaaggctggtctgagtctctgccccgg
aaccggaggagtgatctttcagagcaagaagccaaagttcagcctctagtccgttccctt
ccccgcctcgacggccctggtcgtctccatgaaaactcagtgtgggggatcgtgcccgcg
aaaacctcagcccaccgcaatgtccagagcctgacccaaaaaaatcaaaactgccagtct
cagaatttctcagaacatcaagtcttttcgattttcgttgggaataaagcaaaggaatac
tcagcaaaaatggagccgatgaaaagagaatgcaaggaaataaaggcaaatggaggagga
aactgtctaaatccaggaaaatgcactgtactttctagatgccaagataagatcaagaat
cctctcttggggtggtctggatcgggacccctttctggtaacactaccattaaagaaaat
ggttctggagcctttggagaactctttggcaagaagtccgctagacatataggttctcca
agtccccaccagactcaggagcccagctggcttcacccagtggatcctgcaccagggccg
caggtggagctgcctgccagtcctgccccgtgtgctcgcactcctcagcccttgggtggt
cgatgggactgggcaccgtggagcaggggcagcactcgtcagggaggctctggccgcacg
atgggaacacttcagaatgaagacccaactccccactggggtgcagaagcttatatgcca
tctcaagatgacagaaagaatggggacttggtgcatggccaaaaacaagttgtgatggtt
gccttgatgatggcgaaggtgcctggtgtaactcagcgctgctctgctcagtggtgggag
cagggttctcagttggggcttcacctgcttcggtctctgccatcttgtgaaggagcctta
ggaggatag

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_2|232_aa
MDSEGKDLKDKCGQEEKTKMELEENERKSSSINGELKKDFAIAQTVKQRQQKQYGKQKVS
ILFSVECIIMFSRLIIQQEVFLSSPEMNSEEMCTRLASDGAMSLTSSSSGRVEWMAAVTV
AAGTAAIGYLAYKRFYVKDHRNKAVINLHIQKDNPKTVHAFDMEDLGDNAVYCRFWRSKN
SHSVMGLTQNTTKRLESTWDLLSSRKKKLKWTVLILVVKLPDCLIRMTTTSG

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_2|699_bp
atggattcagagggaaaagatctaaaggataagtgtgggcaagaggaaaagacaaaaatg
gaactagaagaaaatgagagaaagtcttcatcaataaatggagaattaaagaaagacttc
gctattgctcaaacagttaaacagaggcaacaaaaacaatatggaaaacaaaaagtctct
atcttattctcagtggaatgcatcatcatgttcagtaggctaatcatacagcaagaagtc
ttccttagttcaccagagatgaattcagaagaaatgtgcacacgccttgcaagcgacggc
gccatgagtctgacttccagttccagcggacgagttgaatggatggcagcagttaccgtt
gctgctgggacagctgcaattggttatctagcttacaaaagattttatgttaaagatcat
cgaaataaagctgtgataaaccttcacatccagaaagacaaccccaagacagtacatgct
tttgacatggaggatttgggagataatgctgtgtactgccgtttctggaggtccaaaaat
tcccattctgtgatgggtctcacacaaaacacaacgaagagactggagtcaacgtgggac
ctcttatcatcaagaaaaaagaaacttaagtggacagttttgatacttgtcgtgaaatta
cctgattgtttaattagaatgactaccacctctggctaa

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_3|284_aa
MKEKMLRAAREKGQVTHKVLEVLARAIRQEKEIKGIQVGKEEVKLSLFADDVIVYLENPI
ISAQNLLKLIGNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYIGIQ
LTRDVKDLFKENYKTLLNEIKEDTNKWKNIPCSWEGRINIVKVAILPKGIYRFNAIRIKL
PMTLFTELEKTTLKFIWNQKRACIAKSILSQKNKAGGITLPDFKLYYKATVTKTTWYWYQ
NRDIDHCNRTQPSEIMLHIYNYLISDKPDKNKQWGKDFLFNKWC

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_3|855_bp
atgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagtgttg
gaagttctggccagggcaatcaggcaggagaaagaaataaagggtattcaagtaggaaaa
gaggaagtcaaattgtccctgtttgcagatgacgtgattgtgtatctagaaaaccccatc
atctcagcccaaaatctccttaaactgataggcaacttcagcaaagtctcaggatacaaa
atcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaa
atcatgagtgaactcccattcacaattgcttcaaagagaataaaatacataggaatccaa
cttacaagggatgtgaaggacctcttcaaggagaactacaaaacactgctcaatgaaata
aaagaggatacaaacaaatggaagaacattccatgctcatgggaaggaagaatcaatatc
gtgaaagtggccatactgcccaagggaatttatagattcaatgccatccgcatcaagcta
ccaatgactctcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaa
agagcctgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgcta
cctgacttcaaactatactacaaggctacagtaaccaaaacaacatggtactggtaccaa
aacagagatatagatcattgtaacagaacacagccctcagaaataatgctgcatatctac
aactatctgatctctgacaaacctgacaaaaacaagcaatggggaaaggatttcctattt
aataaatggtgttga

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_4|415_aa
MQSTWYRGQNIPDLAVRELKDMGKAPGGRGSCGHSFSRLKRSCLLALKRAAALPAQCSSS
AKGQTASSSGSLTPLPPDWETPLSRGQQTPHTGELWLASGRCPSGTRLPEEGAGSNLCCS
AAFAGDTQENRVWSGPPADLQQRGLTVRRKTNKQQGIASTLTKRMPTQKPHLKDHNVSPA
REQNWMENEFDELTEVGFRRWVITNSSELKEHVLTQSKEAKNLEKRLEELLTRITSLEKN
INDLMELKNTAREPGEAYKTPHRTYSKIDHIIGSKTLLSKCKITEIITDSFSNHSTFKLE
LRITKLTQNRTTTWKLNNLLLNDYWVNNIKAKINKFFETNENTDTMYQNLWDTDKAVSRG
KFIALNAHRRKRERSKIDTLTSQLKELEKQEQMNSKASRRQEITKIRAELKEIET

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_4|1248_bp
atgcagagcacatggtataggggtcagaatattccagacctggccgtgagagagctcaaa
gacatgggcaaagcacctgggggaaggggcagctgtgggcatagcttcagcagacttaaa
cgttcatgcctgctggctctgaagagagcagcggctctcccagcacagtgttcgagctct
gctaagggacagactgcctcctcaagtgggtccctgaccccactgcctcctgactgggag
acacctctcagcaggggtcaacagacacctcatacaggagagctctggctggcatctggc
aggtgcccctctgggacaaggcttccagaggaaggagcaggcagcaatctttgctgttct
gcagccttcgctggtgatacccaggaaaacagggtctggagtggacctccagcagacctg
cagcagaggggcctgactgttagaagaaaaactaacaagcagcaaggaatagcatcaaca
ttaacaaaaaggatgcccacacagaaaccccacctgaaggatcacaacgtctcaccagca
agggaacaaaactggatggagaatgagtttgacgaattgacagaagtaggcttcagaagg
tgggtaataacaaactcctccgagctaaaggagcatgttctaacccaaagcaaggaagct
aagaaccttgaaaaaaggttagaggaattgctaactagaataaccagtttagagaagaac
ataaatgacctgatggagctgaaaaacacagcacgagaacctggtgaagcatacaaaaca
ccacatcgcacttattctaaaattgaccacataattggaagtaaaacactcctcagcaaa
tgcaaaataacagaaatcataacagacagtttctcaaaccacagtacattcaaattagaa
ctcaggattacaaaactcactcaaaaccgcacaactacatggaaactgaacaacctgctc
ctgaatgactactgggtaaataacattaaggcaaaaataaataagttctttgaaaccaat
gagaacacagacacaatgtaccagaatctctgggacacagataaagcagtgtccagaggg
aaatttatagcactaaatgcccacaggagaaagcgagaaagatctaaaattgacacccta
acatcacaattaaaagaactagagaagcaagagcaaatgaattcaaaagctagcagaaga
caagaaataactaagatcagagcagaactgaaggagatagagacatga

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_5|115_aa
MDKFLDTYTLPRLNQEEVESLNRPIIGSEIEAIINSLPTKKSPGPDGLTAKFYQRYKEEL
VQQYKKDERENVHLSRELQGKQCLGKSKEVKRRFSEELRFWEIMLTIDLKIPKGQ

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_5|348_bp
atggataaattcctggacacatacaccctcccaagactaaaccaggaagaagttgaatct
ctgaatagaccaataataggctctgaaattgaggcaataattaatagcttaccaaccaaa
aagagtccaggaccagatggactcacagccaaattctaccagaggtacaaggaagaactg
gtccagcagtacaagaaggatgagagagaaaatgtccatctttcaagagagctgcaaggg
aagcagtgtctggggaagagcaaggaagtgaagagaagattcagtgaagagttgaggttt
tgggagattatgctgacaattgaccttaaaattccaaagggccagtga

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_6|132_aa
MGEKQSRKAGNSKNQSTSPPPKERSSSPATEQSWTENDFDKSREEGFRQLNYSELKEEVR
THGKEVKNLENKLDKWLTRIINVEKSLKDLMELKTMARELHDECTSLSSRVHQVEEGVSV
MEDQMSEMKQEV

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_6|399_bp
atgggggaaaaacagagcagaaaagctggaaactctaaaaatcagagcacctctcctcct
ccaaaggaacgcagctcctcaccagcaacggaacaaagctggacagagaatgactttgac
aagtcgagagaagaaggcttcagacaattgaactactctgagctaaaggaagaagttcga
acccacggcaaagaagtgaaaaaccttgaaaacaaattagacaaatggctaactagaata
atcaatgtagagaagtccttaaaggacctgatggagctgaaaaccatggcacgagagcta
catgatgaatgcacaagcctcagtagccgagtccatcaagtggaagaaggggtttcagtg
atggaagatcaaatgagtgaaatgaagcaagaagtttag

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_7|100_aa
MRTNQGYGIVAVDSCWKHLLVSQRGMNINLEGCECSESEGNAARSSPDISSNPSRLAQAE
RVKHSKSRSAKNRTIAHALTPFIRDAEGQGVKDLEPDLMV

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_7|303_bp
atgcgtacaaaccaaggctacggcatcgtggctgtagacagttgttggaagcatctgctc
gtatctcaaagaggaatgaatatcaatcttgaagggtgtgagtgttctgagagtgaaggg
aatgctgccaggtcttcccctgacatatcatccaatccaagccgactagcccaagcagaa
cgggtcaaacattccaaaagtagatctgccaaaaacaggaccattgcacacgcattaact
ccttttattagggatgcagaagggcaaggagtcaaagatttggaaccagacctcatggtg
tga

>gi568815586r:42578873_42779124|GENSCAN_predicted_peptide_8|70_aa
XRVKLVISGWFASSDTYRDFESRTFTGHEESTKEMEKRSSNHEQKEGFLRLLHHGCDPFI
RDMAYTTKAL

>gi568815586r:42578873_42779124|GENSCAN_predicted_CDS_8|213_bp
ngtcgagtgaaacttgtgatctcaggttggtttgcctcttctgatacctacagagacttt
gagtcccggacgttcacaggacatgaggaaagcacaaaagagatggaaaaacgatcaagt
aaccatgaacaaaaggaggggttcctccgcctgcttcatcatggctgtgacccgtttatc
agggatatggcttacacaactaaagctctatag