GENSCAN 1.0 Date run: 6-Nov-116 Time: 22:51:42 Sequence gi568815586r:110811080_111019194 : 208115 bp : 46.92% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.04 Intr - 939 697 243 0 0 117 76 84 0.075 7.79 1.03 Intr - 5679 5637 43 2 1 79 68 29 0.001 -1.76 1.02 Intr - 15806 15731 76 0 1 57 67 80 0.015 1.37 1.01 Init - 30865 30634 232 1 1 77 69 357 0.691 31.12 1.00 Prom - 34231 34192 40 -5.86 2.00 Prom + 34386 34425 40 -11.72 2.01 Init + 35003 35033 31 1 1 62 115 -6 0.419 -0.53 2.02 Intr + 35817 36026 210 1 0 77 119 139 0.362 14.78 2.03 Intr + 37661 37881 221 0 2 49 99 -9 0.154 -5.68 2.04 Intr + 42326 42495 170 1 2 102 86 182 0.969 18.14 2.05 Intr + 47507 47696 190 2 1 50 70 211 0.171 15.09 2.06 Intr + 59599 59682 84 0 0 71 63 47 0.112 0.52 2.07 Intr + 62763 62882 120 2 0 111 46 39 0.260 2.69 2.08 Intr + 68827 69008 182 0 2 52 64 313 0.648 23.97 2.09 Intr + 70036 70217 182 1 2 72 81 379 0.173 35.11 2.10 Intr + 72951 73171 221 1 2 84 71 405 0.875 36.42 2.11 Intr + 81997 82071 75 0 0 66 78 58 0.245 2.31 2.12 Intr + 87830 88046 217 1 1 36 97 227 0.914 16.48 2.13 Intr + 93509 93712 204 0 0 83 101 265 0.981 26.47 2.14 Intr + 96252 96393 142 1 1 37 56 184 0.297 9.51 2.15 Term + 96458 96665 208 2 1 33 42 119 0.290 -1.39 2.16 PlyA + 99655 99660 6 1.05 3.08 PlyA - 99785 99780 6 1.05 3.07 Term - 100096 99998 99 1 0 94 49 226 0.977 17.43 3.06 Intr - 102065 102017 49 1 1 118 80 37 0.982 4.58 3.05 Intr - 102245 102167 79 0 1 84 64 113 0.997 7.11 3.04 Intr - 103211 103107 105 0 0 101 86 164 0.991 17.69 3.03 Intr - 104711 104636 76 2 1 103 76 100 0.981 9.39 3.02 Intr - 108114 108025 90 0 0 130 90 90 0.999 13.59 3.01 Init - 109450 109448 3 1 0 101 101 0 0.809 2.60 3.00 Prom - 114642 114603 40 -3.16 4.00 Prom + 120537 120576 40 -1.06 4.01 Init + 123552 123607 56 2 2 70 105 8 0.067 1.66 4.02 Intr + 131989 132054 66 1 0 78 75 76 0.032 3.32 4.03 Intr + 152003 152172 170 2 2 62 75 93 0.145 4.99 4.04 Intr + 153177 153234 58 1 1 100 98 32 0.820 3.34 4.05 Intr + 153738 154004 267 0 0 124 34 80 0.449 2.85 4.06 Term + 160883 161006 124 2 1 81 54 60 0.267 -0.24 4.07 PlyA + 162769 162774 6 1.05 5.06 PlyA - 162870 162865 6 1.05 5.05 Term - 166572 166393 180 0 0 100 44 110 0.404 5.41 5.04 Intr - 176156 176131 26 0 2 90 82 2 0.012 -2.46 5.03 Intr - 176666 176607 60 0 0 82 91 20 0.009 0.41 5.02 Intr - 201485 201327 159 0 0 80 45 83 0.112 3.16 5.01 Init - 206656 206443 214 1 1 62 91 69 0.091 3.51 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term + 69686 69860 175 2 1 -15 43 283 0.824 10.73 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_1|198_aa MRFAKKHNKKSLKKMQANNAKAMGARAEAIKALAKPEEAKPKIPKGISHKLDRPACITHS KLGKLHQPACITPLECSGNAIHVGAPGGATYTDNTVNAIPRVLVSNEFLVDFTWLSQATS KEPHMEGFANQQRERFIQIFAKGRASSEPLTNSSLHDLKYNLLKTIFWEGRQRKKETKGQ GGGSQDRIEEDPGNQKAP >gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_1|594_bp atgcgctttgccaagaagcacaacaaaaagagcctgaagaagatgcaggccaacaatgcc aaggccatgggtgcacgtgccgaggctatcaaggccctggcaaagcccgaggaggctaag cccaagatcccaaagggcatcagccacaagcttgatcgacctgcctgcatcacccactcc aagcttgggaagctccatcaacctgcctgcatcaccccactggagtgcagtggaaacgcc attcatgttggtgcaccagggggcgccacttacacagacaatacagtgaacgccatcccc agggtccttgtcagcaacgaattcctagtggattttacctggctatctcaggcaacaagc aaagagccacacatggagggctttgcaaaccaacagcgtgagaggttcatccagattttt gccaagggcagagctagctctgagcctctaaccaactcatcattacatgacttaaaatac aatttgctgaagacaatcttctgggaagggagacagagaaagaaagaaaccaagggtcaa ggaggaggcagccaagacaggatagaggaggaccctggaaaccagaaggctcct >gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_2|818_aa MSQRTWPPKYADLQGRTSMFVRVTKAPVPGVPERPGVGLGVWRSEAAQQAVLPAPSEAQL QQPSDKRPEQPRTSSPGPATDEETEAQRGQITLSVKVRYTQFMLLRWCITNPLRTQRALE HRTAPGQYEIGAAPNSRAERGPRESILCPNLVSQLKKNRRKDSDTPQEPSEKAKEQQAEA ELRKLRQQFRKMVESRKSFKFRNQQKIASQYKEIKTLKTEQDEITLLLSLMKSSRNMNRS EKNYMELRLLLQTKEDYEALIKSLKVLLAELDEKSHPPLLEKDLSPSMTALVALIFTFYF VKILQMEKKIANQKQIFAKMQEANNPRKLQKQIHILETRLNLVTVHFDKMLTTNAKLRKE IEDLRFEKAAYDNVYQQLQHCLLMEKKTMNLAIEQSSQAYEQRVEAMARMAAMKDRQKKD TSQYNLEIRELERLYAHESKLKSFLLVKLNDRNEFEEQAKREEALKAKKHVKKNRGESFE SYEVAHLRLLKLAESGNLNQLIEDFLAKEEKNFARFTYVTELNNDMEMMHKRTQRIQDEI ILLRSQQKLSHDDNHSVLRQLEVGIGVCHQDKLRKTTEEADMYESKYGEVSKTLDLLKNS VEKLFKKINCDATKILVQLGETGKVTDINLPQYFAIIEKKTNDLLLLETYRRILEVEGAE AEIPPPFINPFWGGSALLKPPEPIKVIPPVLGADPFSDRLDDVEQPLDHSSLRQLVLDNY ILKENRSKEVRGDSLPEKVDDFRSRKKVTILVPVTHITKGFGYWGHLWAGAEEREVKAGT GSGNHVSPSRPLETSELETSTGHPQICRDMDADAVHQM >gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_2|2457_bp atgagccagcgcacctggcctccaaaatatgcggacttgcaggggagaacgtccatgttt gtgcgagtcacaaaggcgcccgttccaggggtcccagaacgcccgggcgtggggctgggg gtgtggcgcagcgaggccgcgcagcaagcagtcctcccggcaccgtcggaagcgcagttg cagcagccgtcggacaagcggccggagcagccacggacaagcagtccgggccccgccact gatgaggaaactgaagctcagagaggtcaaatcacactgtcagtgaaggtcagatatacc cagttcatgttattaagatggtgcattacaaatccacttaggacccaaagggccctggaa catagaacagctcctggacaatatgaaattggagctgccccaaattccagggctgaaaga ggtcccagagagagcatcctgtgcccaaaccttgttagtcagttgaagaagaacaggaga aaagactccgacactccccaggaaccttcggagaaggccaaagagcagcaggcggaggca gagctccggaagctaaggcagcagttcaggaagatggtggaaagccggaagtcttttaag ttccgaaaccagcagaagattgcgagtcagtacaaggagatcaagaccctgaagacagag caggatgagatcaccctactgttgagtctcatgaaatcctcgaggaacatgaatcggagt gagaagaactacatggagctgcgactcctgctccaaactaaggaggactatgaggcattg attaaatccctgaaagtgctgttggctgaactggatgagaagtcacatcccccattatta gagaaagacctctctccatcaatgaccgccctggttgctctcatcttcaccttctatttt gtcaagattcttcagatggaaaaaaaaatcgcaaaccaaaaacagattttcgcaaaaatg caggaggccaataacccccggaaactgcagaaacagattcacattttggaaacccgtttg aatctcgtcactgttcactttgacaagatgctgaccactaatgccaagctccggaaggag attgaagacctacgatttgagaaggctgcttatgacaatgtctaccagcagctccagcac tgcctgttgatggagaagaaaaccatgaacttggccattgagcaatcttctcaggcctat gagcagagggtggaggccatggctcgaatggctgccatgaaagaccgccagaagaaggac acctctcagtacaacctggagatccgagagctggagcgtctctatgcccatgagagcaag ctcaagtccttcctgctcgtcaagctgaatgatcgcaatgaattcgaggagcaggccaaa agggaggaagctctcaaggcaaagaagcatgtcaagaagaacaggggagagagttttgag agctatgaggtggcccacctccggctgctgaagctggctgagagtgggaacctaaaccag ctcattgaagattttctggccaaggaggagaagaattttgctcggttcacgtatgtcacg gagctcaacaacgacatggagatgatgcacaagaggacccaacgaatccaggacgagatc atcctcttgcgatcccagcagaaattgtcccacgatgacaaccactctgtcctgagacag ctggaggtgggaattggggtctgccaccaggataaactgaggaagaccacggaggaggca gatatgtatgagagcaagtacggggaggtcagcaagaccttggatctattgaagaactca gtggagaaactgttcaagaagataaactgtgacgccaccaagatcctggtgcagttaggg gagacggggaaagtcactgacatcaaccttccgcagtattttgccatcattgaaaagaag accaacgacctgctgctgttggagacctacaggcgcatcctggaagtggaaggggcagag gctgagatcccgccacccttcatcaaccctttctggggtggctctgccctcctcaagccc ccagaacccatcaaagtcatccccccagtgctgggggctgaccccttcagcgacaggttg gatgatgtggaacagcccctggaccacagcagccttcggcagctggttctcgacaattat atcctgaaggagaatcggagtaaggaagtgcgcggagacagcctgcctgagaaggtggat gacttcagatccaggaagaaagtaaccatcctcgtgcctgtcacacacattactaagggc tttgggtactggggccacctctgggctggggccgaggagcgagaagtaaaagcgggaaca gggagtgggaaccatgtgagtccatcaaggcccctggaaacctctgagctggagaccagc acaggccacccccagatatgcagagacatggatgcagatgcggtccaccagatgtaa >gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_3|166_aa MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVN VKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVR EMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD >gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_3|501_bp atggcacctaagaaagcaaagaagagagccgggggcgccaactccaacgtgttctccatg ttcgaacagacccaaatccaggaatttaaggaggccttcactatcatggaccagaacagg gatggcttcattgacaagaacgatctgagagacacctttgctgcccttgggcgagtgaac gtgaaaaatgaagaaattgatgaaatgatcaaggaggctccgggtccaattaactttact gtgttcctcacaatgtttggggagaaacttaagggagcggaccctgaggaaaccattctc aacgcattcaaagtgtttgaccctgaaggcaaaggggtgctgaaggctgattacgttcgg gaaatgctgaccacgcaggcggagaggttttccaaggaggaggttgaccagatgttcgcc gccttcccccctgacgtgactggcaacttggactacaagaacctggtgcacatcatcacc cacggagaagagaaggactag >gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_4|246_aa MAHGILSGMKVCGQQGPRRIWDFLVDIKWLLQLQATHAPSRKDHISKFQMENGLVMASPC GFLWQLKGLILQDPALGSLFLLCAGYDDSCQEGQGISVPTNAAYTWNDAAFHPIPTSWAW VKVRRQSAQSGPRVEGGWCPKGKLGCWYLSRKKRYQEGQTTDIPCGHKVGTCKTAPIPGY SCYQKNKELDRLPSFSEGHRGVSEGRLNKLSYLGTMEAFVVFSFLVWATVCTRIQITLEG HASDYL >gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_4|741_bp atggctcatggaatcctctctggaatgaaggtgtgtggccagcaagggcctcggaggata tgggacttccttgtggacataaaatggctgctgcagctccaggccacacatgcaccttcc aggaaagaccatatttccaagttccagatggaaaatggactggttatggccagtccctgt ggcttcctatggcagcttaaagggctcatcttgcaggatcctgccctgggctccctcttc ctcctgtgtgccggatatgatgacagctgtcaagagggacaaggcatttcagtacccacc aatgctgcatatacctggaatgatgctgcttttcaccccattcccacaagctgggcttgg gtcaaggtgaggagacaatcagcccaaagcggaccccgagtggaaggtggttggtgtccc aaaggcaaattagggtgctggtatctgagcaggaaaaagagatatcaggaaggccaaaca acagacattccctgtgggcataaagttggtacttgcaaaacagcgccaatacctggatat tcctgttaccagaaaaacaaagagctggatcgccttcccagtttctcggaaggacaccgt ggtgtttctgagggaaggctgaacaaactatcttacttggggacaatggaagcttttgtc gtcttttccttcctcgtgtgggccactgtctgtacgagaatccagattacccttgagggc cacgctagtgattacctctga >gi568815586r:110811080_111019194|GENSCAN_predicted_peptide_5|212_aa MRSCPSASPRRRPSGHNEWAPDVDSRTLSDTPNPTRTYFYEPIARGQWVCKNMFMVQGPE ELMICSLHQPTGSFTSPPPGKKAGLRRSGRFRGDAQPLRSGLIWPSTCDFESWKREDYNS EWHADYKYPLTELPEELNQVTVKSGIKTGMRFQTEATPLDPNKKMTEQSLKLPTIDMEPE QEINLYGCKPWRLRRCLLLQHNPVSLTATEGE >gi568815586r:110811080_111019194|GENSCAN_predicted_CDS_5|639_bp atgaggtcttgcccatcagcatctcctagaagaagacccagtggacacaatgagtgggct ccagacgtggattcccggacactttcagatacacccaatccaaccagaacatatttctat gagcccattgcaagaggccagtgggtctgcaaaaatatgttcatggtgcaaggtccagag gagcttatgatttgttccctccatcagccaacaggatccttcacatctcctccaccagga aagaaagctggactgcgcaggtcgggaagattccggggagatgcacagcctttgcgttct gggctcatctggccttcaacgtgtgattttgagagttggaagcgagaagattataactca gaatggcacgcggattataaatatccactcacagagttgccagaagaattaaatcaagta acagttaaatcagggattaaaacaggaatgaggtttcagacagaggccacgccactagat cccaacaagaagatgacagaacagagcctcaagctacccaccattgacatggaacctgaa caagaaataaacctgtatggttgtaagccatggagacttaggagatgtttgttgctgcag cataatccagtctccctgactgctacagagggtgaatga