GENSCAN 1.0	Date run: 19-Jun-119	Time: 14:28:00

Sequence gi568815586f:54449873_54677325 : 227453 bp : 44.50% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   9356   9395   40                              -2.06
 1.01 Init +  23516  23623  108  1  0   63   92    84 0.827   6.52
 1.02 Intr +  23701  23758   58  0  1   54   59    54 0.120  -2.44
 1.03 Intr +  47910  48019  110  1  2   63  121    70 0.156   7.80
 1.04 Intr +  49483  49593  111  0  0   71   93   105 0.998   9.88
 1.05 Intr +  50661  50753   93  2  0   71   88    93 0.990   7.76
 1.06 Intr +  57981  58037   57  2  0  104   60    74 0.969   5.28
 1.07 Intr +  58517  58659  143  1  2   77   92   137 0.999  12.15
 1.08 Intr +  60023  60113   91  2  1   80   79    40 0.780   2.30
 1.09 Intr +  61931  61979   49  1  1  131   89    31 0.881   5.75
 1.10 Intr +  62077  62233  157  2  1   77   76   207 0.579  17.47
 1.11 Intr +  66367  66423   57  1  0   96  103    39 0.516   4.20
 1.12 Intr +  67024  67135  112  1  1   93  -53    95 0.558  -3.72
 1.13 Intr +  67661  67770  110  1  2   76   23   138 0.686   5.18
 1.14 Intr +  67934  68066  133  2  1   50   80    41 0.635   0.15
 1.15 Intr +  68779  68860   82  0  1   65   88    42 0.952   1.11
 1.16 Intr +  69042  69100   59  1  2  110   95    26 0.966   4.10
 1.17 Intr +  69315  69460  146  2  2   69   84    90 0.999   5.78
 1.18 Intr +  70822  70954  133  1  1   94   92    72 0.999   8.85
 1.19 Intr +  71247  71366  120  2  0   92   74   111 0.994  10.79
 1.20 Intr +  73522  73667  146  0  2   40   61   160 0.901   7.58
 1.21 Intr +  73953  74084  132  0  0   91   69    68 0.967   4.96
 1.22 Intr +  76656  76874  219  0  0   56   65   245 0.999  16.42
 1.23 Intr +  78375  78505  131  0  2   60   93   131 0.996  11.14
 1.24 Intr +  81388  81485   98  2  2   63   74   125 0.844   8.33
 1.25 Intr +  81619  81712   94  0  1   69  115    93 0.999   9.64
 1.26 Intr +  81871  81953   83  2  2  107  105   101 0.999  13.06
 1.27 Intr +  82298  82378   81  1  0  116   86    31 0.979   5.53
 1.28 Intr +  85232  85325   94  1  1  100   99   103 0.999  12.14
 1.29 Intr +  86257  86373  117  2  0  100  115    50 0.998   9.34
 1.30 Intr +  87072  87181  110  1  2   36   89   168 0.995  11.70
 1.31 Intr +  89012  89101   90  1  0  110  111    50 0.993   9.69
 1.32 Term +  92703  92813  111  2  0  111   42   138 0.928  10.06
 1.33 PlyA +  95130  95135    6                               1.05

 2.00 Prom +  97025  97064   40                              -5.36
 2.01 Init +  99144  99171   28  2  1   86   75    27 0.304   1.04
 2.02 Intr +  99813  99900   88  1  1  -26   75    98 0.350  -3.87
 2.03 Intr +  99988 100113  126  1  0   96   84   156 0.669  15.79
 2.04 Intr + 117102 117215  114  0  0  115   93   187 0.995  21.46
 2.05 Intr + 119312 119494  183  2  0   75   89   358 0.999  33.50
 2.06 Intr + 119674 119740   67  1  1  106   84    30 0.948   3.31
 2.07 Intr + 120369 120485  117  2  0   86   53   102 0.960   7.16
 2.08 Intr + 122729 122869  141  1  0  106   66   170 0.995  17.15
 2.09 Intr + 123276 123376  101  2  2  118   61   208 0.999  20.01
 2.10 Intr + 123483 123608  126  0  0   76   30   205 0.998  13.29
 2.11 Intr + 123736 123837  102  1  0   86   23   122 0.652   4.79
 2.12 Intr + 125226 125346  121  0  1   72   74   148 0.989  12.30
 2.13 Intr + 125560 125628   69  0  0   79   82    27 0.599   0.58
 2.14 Intr + 125679 125760   82  2  1  117   95    24 0.999   5.21
 2.15 Intr + 126120 126228  109  1  1   70   94   190 0.981  17.14
 2.16 Intr + 126699 126829  131  0  2   59   52   146 0.995   8.44
 2.17 Term + 127353 127456  104  1  2  117   41   205 0.999  17.14
 2.18 PlyA + 127678 127683    6                              -3.64

 3.18 PlyA - 127880 127875    6                              -0.45
 3.17 Term - 128089 127955  135  1  0   92   49   159 0.995  10.42
 3.16 Intr - 131178 131072  107  1  2  102  103    34 0.978   6.23
 3.15 Intr - 132259 132104  156  2  0  104   53    73 0.972   5.38
 3.14 Intr - 132923 132860   64  2  1   99   47    34 0.976  -1.31
 3.13 Intr - 133376 133339   38  0  2  129  105    50 0.994   8.78
 3.12 Intr - 134448 134388   61  0  1   98  115    21 0.881   4.11
 3.11 Intr - 138644 138533  112  1  1   98   80   187 0.589  19.28
 3.10 Intr - 140741 140689   53  2  2   84   78    12 0.167  -2.49
 3.09 Intr - 154409 154318   92  0  2  109   74    62 0.604   6.61
 3.08 Intr - 159805 159761   45  2  0  103   95    47 0.596   5.28
 3.07 Intr - 181967 181866  102  0  0   56   87    61 0.612   2.95
 3.06 Intr - 182509 182279  231  2  0   66   85   145 0.602   9.74
 3.05 Intr - 184938 184912   27  1  0   82  105    33 0.052   2.49
 3.04 Intr - 195390 195301   90  1  0   87  113    17 0.152   4.07
 3.03 Intr - 195835 195734  102  2  0   95   94    14 0.203   2.85
 3.02 Intr - 197287 197249   39  2  0  123   84    27 0.332   4.00
 3.01 Init - 198431 198374   58  2  1   74   76   136 0.757  10.47
 3.00 Prom - 202466 202427   40                              -6.36

 4.00 Prom + 205631 205670   40                              -5.26
 4.01 Init + 209587 209667   81  0  0   79  100    63 0.394   7.63
 4.02 Intr + 216351 216415   65  2  2  119   78    45 0.470   4.12
 4.03 Term + 218608 218692   85  1  1   58   36    98 0.225  -1.27
 4.04 PlyA + 218752 218757    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  47918  48019  102  1  0   86  121    50 0.835   8.34
S.002 Init - 184969 184912   58  1  1   37  105    83 0.815   5.18
S.003 Sngl - 193444 193076  369  1  0   58   43   190 0.907   7.61
S.004 Term - 194884 194774  111  1  0   85   42   116 0.822   5.26


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:54449873_54677325|GENSCAN_predicted_peptide_1|1144_aa
MQRNRLVAKIAALRAHKAEGYQQKSEMRILEGEGIPSPSSHASPSNGHFRRLTLGVAIMS
LTSAYQHKLAEKLTILNDRGQGVLIRMYNIKKTCSDPKSKPPFLLEKSMEPSLKYINKKF
PNIDVRNSTQHLGPVHREKAEIIRFLTNYYQSFVDVMEFRDHVYELLNTIDACQCHFDIN
LNFDFTRSYLDLIVTYTSVILLLSRIEDRRILIGMYNCAHEMLHGHGNQGAEQWRSAQLL
SLISNPPAMINPANSDTMACEYLSVEVMERWIIIGFLLCHGCLNSNSQCQKLWKLCLQGS
LYITLIREDVLQVHKVTEDLFSSLKGYGKRVADIKESKEHVIANSGQFHCQRRQFLRMAV
KELETVLADEPGLLGPKARGRNALFAFMALSFIRDEVTWLVRHTENVTKTKTPEDYADSS
IAELLFLLEGIRSLVRRHIKVIQQYHLQYLARFDALVLSDIIQNLSVCPEEESIIMSSFV
SILSSLNLKQVDNGEKFEFSGLRLDWFRLQAYTSVAKAPLHLHENPDLAKVMNLIVFHSR
MLDSVEKLLVETSDLSTFCFHLRIFEKMFAMTLEESAMLRYAIAFPLICAHFVHCTHEMC
PEEYPHLKNHGLHHCNSFLEELAKQTSNCVLEICAEQRNLSEQLLPKHCATTISKAKNKK
TRKQRQTPRKGEPERDKPGAESHRKNRSIVTNMDKLHLNLTELALTMNHVYSFSVFEHTI
FPSEYLSSHLEARLNRAIVWLAGYNATTQEIVRPSELLAGVKAYIGFIQSLAQFLGADAS
RVIRNALLQQTQPLDSCGEQTITTLYTNWYLESLLRQASSGTIILSPAMQAFVSLPREGE
QNFSAEEFSDISEMRALAELLGPYGMKFLSENLMWHVTSQIVELKKLVVENMDILVQIRS
NFSKPDLMASLLPQLTGAENVLKRMTIIGVILSFRAMAQEGLREVFSSHCPFLMGPIECL
KEFVTPDTDIKVTLSIFELASAAGVGCDIDPALVAAIANLKADTSSPEEEYKVACLLLIF
LAVSLPLLATDPSSFYSIEKDGYNNNIHCLTKAIIQVSAALFTLYNKNIETHLKEFLVVA
SVSLLQLGQETDKLKTRNRESISLLMRLVVEESSFLTLDMLESCFPYVLLRNAYREVSRA
FHLN

>gi568815586f:54449873_54677325|GENSCAN_predicted_CDS_1|3435_bp
atgcagcgaaacaggttggtagccaaaatagctgcattgagagcccacaaggctgaaggc
taccagcagaaaagcgaaatgaggatattagaaggtgaaggtatcccgtcaccttcctcc
cacgcaagccccagcaacggccacttccggcgcctaacgttgggagtggccatcatgtct
ttgacatctgcttaccagcataaattagcagagaagctcactatcctgaatgatcgcggt
cagggggttctcatccgtatgtataacatcaagaagacttgttcagaccccaaatctaag
ccacctttcttactggaaaagtccatggaaccatctctcaagtatatcaacaagaaattt
cccaacatagatgtccgaaacagcacgcaacatttaggaccagtacatcgtgaaaaagcc
gagataattagattcctcaccaactactaccagtcatttgtggatgtcatggaatttcgg
gatcatgtatatgaacttctcaacaccattgatgcctgccagtgccattttgatatcaat
ctcaactttgatttcactcggagttacctggacttgattgtaacttacacctcagtcatt
ttacttctgtcacggattgaagatcggcggatactcattggcatgtacaattgtgcccat
gagatgctgcatgggcatggaaaccagggggctgagcagtggcgcagtgcccaacttcta
agcctcatcagcaaccccccagccatgattaaccctgctaattcagatacaatggcctgt
gagtatctgtctgtggaagtaatggagcgctggattatcattgggtttcttctttgtcat
gggtgcctcaactccaatagccagtgccagaagctgtggaagctgtgtctgcagggctcc
ctctacatcacccttatccgtgaggatgtgctgcaggtgcacaaagtcaccgaggacctg
tttagcagtttgaaagggtatggcaagagagtggcagacataaaggagagcaaggaacat
gtaattgcaaacagtggccagtttcattgtcaacggcggcaatttctgcggatggcagtg
aaggagctggagactgtgttggctgatgaaccgggactactgggtcctaaggcaagagga
agaaatgctctttttgctttcatggccctgtccttcattcgtgatgaggtcacctggctg
gttcgccacacagagaatgtcaccaagacaaagacacctgaggactatgctgactcgagc
attgcagagctacttttcttgttggaggggattaggtctctggtccgaagacacatcaaa
gtgatacagcaataccaccttcagtacttggcaagatttgatgctcttgtgctcagtgac
atcattcagaacttgtctgtgtgtccagaggaggagtccatcatcatgtcctcattcgtc
agtatcctctcctctctgaatctcaaacaagttgataatggagaaaaatttgaattctca
ggattgaggctggactggttccgcctacaggcatacactagcgtggctaaggcccctctg
cacctgcatgagaaccctgacttagccaaggtgatgaacctcattgtcttccactcccga
atgctggactccgtagaaaaattgctggtggaaacttctgatctgtctactttctgcttt
catcttcgtatctttgagaagatgtttgccatgaccttggaggaatctgccatgttgcgt
tatgccattgctttccccctgatttgtgctcactttgtccactgcactcatgagatgtgc
ccagaggagtacccccacctcaagaaccatggtcttcaccactgcaactccttcctggaa
gagttggccaagcagaccagcaattgcgtcctggagatctgtgctgagcagcgaaacctg
agcgagcagcttctacctaagcactgtgccactacaatcagcaaagccaagaacaagaaa
accaggaagcagaggcagactcccagaaaaggagagcccgagagggacaagccaggagct
gagagtcaccggaagaaccgcagcattgtcaccaacatggacaagctacacctaaacttg
acagaactggcactgacaatgaatcatgtatacagtttctccgtgtttgaacatactatc
ttcccttctgagtacctcagcagccacctggaggccagactcaacagagccattgtgtgg
ctggctggctacaatgccacgacccaggagatcgtacggccttctgagctgttggcagga
gtcaaagcatacattggtttcatacagtcactggcccagtttttgggtgcagatgcttcc
agagtcatccgcaacgccctcctgcagcagacacaaccactggattcctgtggggaacag
acaatcaccacactctacacaaactggtacctggaaagtctgcttagacaggcaagcagt
gggaccatcatcctctccccagccatgcaggccttcgtcagcctgcccagagaaggggag
cagaacttcagtgcagaggagttctctgacatctctgagatgcgggccttggcagaactc
ctgggcccctatggcatgaagttcctgagtgaaaacctgatgtggcatgtgacctctcag
attgtggagctgaagaagctggtggtggaaaacatggacatacttgttcagatcagatcc
aactttagcaagccggacttgatggcttccctgctgccccagctgacaggggctgaaaat
gtgctaaagcgcatgaccatcattggggttatcctcagtttcagggccatggcccaagag
ggacttcgggaggttttctcctcccactgcccatttcttatgggtcccattgagtgcttg
aaggagtttgtcactccagacacagacatcaaggtgaccttgagtatctttgagctggca
tctgctgcaggtgtgggctgtgacattgacccagccttggtggctgccattgctaatctg
aaagctgatacttcatctcctgaggaggaatataaggtggcctgcctgctcttgatcttt
ctggcagtttccctcccactccttgccactgacccttcttccttttatagcattgagaag
gatggttacaacaacaatattcattgcttgaccaaagccatcatccaggtgtctgctgcc
ctcttcacgctctacaacaagaacattgaaactcacctcaaggaatttctggtggtggcc
tctgtcagcctcttgcagctgggccaggagactgacaagcttaaaaccagaaatcgagaa
tccatttctctgctcatgcgcttggtggtggaggagtcatccttcctgaccctggacatg
ctggagtcctgtttcccttatgtcctgcttcgaaatgcctatcgggaggtgtctcgggcc
ttccacctaaactga

>gi568815586f:54449873_54677325|GENSCAN_predicted_peptide_2|602_aa
MEKATVLETAGEEEPQELQLCQLGPSLETPAWLVHASRRPWLSMELSPRSPPEMLEESDC
PSPLELKSAPSKKMWIKLRSLLRYMVKQLENGEINIEELKKNLEYTASLLEAVYIDETRQ
ILDTEDELQELRSDAVPSEVRDWLASTFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVER
MFRRTYTSVGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRF
KIPTVFLMSFLDALETGYGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAII
FAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDEMNIFINLTK
DEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQ
WLVHSRWTKALMEEFFRQVNSAEISHNNPPPPPLATCTPDLGDKEAELGLPFSPLCDRTS
TLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDP
NPDVVSFRSTWVKRIQENKQKWKERAASGITNQMSIDELSPCEEEAPPSPAEDEHNQNGN
LD

>gi568815586f:54449873_54677325|GENSCAN_predicted_CDS_2|1809_bp
atggagaaggccacagtcttggagacagcgggagaggaggagccgcaggagctgcagctc
tgccagcttgggccgagcctagagacaccggcctggctggtccacgccagccgcagaccg
tggctgagcatggagctgtccccccgcagtcctccggagatgctggaggagtcggattgc
ccgtcacccctggagctgaagtcagcccccagcaagaagatgtggattaagcttcggtct
ctgctgcgctacatggtgaagcagttggagaatggggagataaacattgaggagctgaag
aaaaatctggagtacacagcttctctgctggaagccgtctacatagatgagacacggcaa
atcttggacacggaggacgagctgcaggagctgcggtcagatgccgtgccttcggaggtg
cgggactggctggcctccaccttcacccagcaggcccgggccaaaggccgccgagcagag
gagaagcccaagttccgaagcattgtgcacgctgtgcaggctgggatcttcgtggaacgg
atgttccggagaacatacacctctgtgggccccacttactctactgcggttctcaactgt
ctcaagaacctggatctctggtgctttgatgtcttttccttgaaccaggcagcagatgac
catgccctgaggaccattgtttttgagttgctgactcggcataacctcatcagccgcttc
aagattcccactgtgtttttgatgagtttcctggatgccttggagacaggctatgggaag
tacaagaatccttaccacaaccagatccacgcagccgatgttacccagacagtccattgc
ttcttgctccgcacagggatggtgcactgcctgtcggagattgagctcctggccatcatc
tttgctgcagctatccatgattatgagcacacgggcactaccaacagcttccacatccag
accaagtcagaatgtgccatcgtgtacaatgatcgttcagtgctggagaatcaccacatc
agctctgttttccgattgatgcaggatgatgagatgaacattttcatcaacctcaccaag
gatgagtttgtagaactccgagccctggtcattgagatggtgttggccacagacatgtcc
tgccatttccagcaagtgaagaccatgaagacagccttgcaacagctggagaggattgac
aagcccaaggccctgtctctactgctccatgctgctgacatcagccacccaaccaagcag
tggttggtccacagccgttggaccaaggccctcatggaggaattcttccgtcaggtcaac
agtgcagaaatttcacacaacaaccccccacccccaccacttgccacctgtaccccagat
ctgggtgacaaggaggcagagttgggcctgcccttttctccactctgtgaccgcacttcc
actctagtggcacagtctcagatagggttcatcgacttcattgtggagcccacattctct
gtgctgactgacgtggcagagaagagtgttcagcccctggcggatgaggactccaagtct
aaaaaccagcccagctttcagtggcgccagccctctctggatgtggaagtgggagacccc
aaccctgatgtggtcagctttcgttccacctgggtcaagcgcattcaggagaataagcag
aaatggaaggaacgggcagcaagtggcatcaccaaccagatgtccattgacgagctgtcc
ccctgtgaagaagaggcccccccatcccctgccgaagatgaacacaaccagaatgggaat
ctggattag

>gi568815586f:54449873_54677325|GENSCAN_predicted_peptide_3|503_aa
MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKAVAGALVYAAKPNEEISGPAEPAS
PPETTTTAQETSAAAVQGTAKVTSSRQELNPLSKSLSLCQINNLEKSLAAGPHHTSTHRD
KPESIVEKSILLTEQALAKAGKGMHGGVPGGKQFIEKPEGEIHSETQPADAWVEGGRKKP
STQVQGAERDVMEGQRSAAVPQEITIKPAATINRDLLCTSAGPPAAAPAMEQDNSPRKIQ
FTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEIDEDRIPNPHLKSTLAMSPRQR
KKMTRITPTMKELQMMVEHHLGQQQQGEEPEGAAESTGTQESRPPGIPDTEVESRLGTSG
TAKKTAECIPKTHERGSKEPSTKEPSTHIPPLDSKGANSVGCFFHDHAPLEQMGEPVLMD
GADDIKHFGLNEDLGKEGETSVP

>gi568815586f:54449873_54677325|GENSCAN_predicted_CDS_3|1512_bp
atgaggttcatgactctcctcttcctgacagctctggcaggagccctggtctgtgcctat
gatccagaggccgcctctgccccaggatcggggaacccttgccatgaagcatcagcagct
caaaaggaaaatgcaggtgaagacccagggttagccagacaggcaccaaagccaaggaag
cagagatccagccttctggaaaaaggcctagacggagcaaaaaaagctgtggggggactc
ggaaaactaggaaaagatgcagtcgaagatctagaaagcgtgggtaaagctgtagcaggg
gccctggtctatgctgctaagcctaatgaagagatctcaggtccagcagaaccagcttca
cccccagagacaaccacaacagcccaggagacttcggcggcagcagttcaggggacagcc
aaggtcacctcaagcaggcaggaactaaaccccctgagtaagtctctgtctctatgccag
atcaacaacctagaaaagtctctggctgcaggcccacatcacacctccacgcacagagat
aagcctgaatccatagtggagaaaagtatcttactaacagaacaagcccttgcaaaagca
ggaaaaggaatgcacggaggcgtgccaggtggaaaacaattcatcgaaaagccagaaggt
gaaattcactcggagactcagcctgcagatgcctgggtagaaggtggaagaaaaaaacct
tctacacaggttcaaggtgcagagagagatgtcatggagggccagcgctcagccgcagtg
cctcaggaaataacaataaaaccagcagctacaattaaccgtgaccttctatgcaccagc
gcgggcccaccggccgccgccccagccatggagcaagacaacagcccccgaaagatccag
ttcacggtcccgctgctggagccgcaccttgaccccgaggcggcggagcagattcggagg
cgccgccccacccctgccaccctcgtgctgaccagtgaccagtcatccccagagatagat
gaagaccggatccccaacccacatctcaagtccactttggcaatgtctccacggcaacgg
aagaagatgacaaggatcacacccacaatgaaagagctccagatgatggttgaacatcac
ctggggcaacagcagcaaggagaggaacctgagggggccgctgagagcacaggaacccag
gagtcccgcccacctgggatcccagacacagaagtggagtcaaggctgggcacctctggg
acagcaaaaaaaactgcagaatgcatccctaaaactcacgagagaggcagtaaggaaccc
agcacaaaagaaccctcaacccatataccaccactggattccaagggagccaactcggtg
ggttgtttcttccacgaccacgctcccttggagcagatgggggagccagtcctgatggat
ggtgctgatgacatcaaacactttggactcaatgaagacctggggaaagagggagaaact
tcagtgccctga

>gi568815586f:54449873_54677325|GENSCAN_predicted_peptide_4|76_aa
MDVGSMPPLPPVEVVLVLSIVVRPEAKSDWLKDVPWSEQMEEGVEQDLRVEKSNNNKELD
QSSKDSEGKKEQEKNK

>gi568815586f:54449873_54677325|GENSCAN_predicted_CDS_4|231_bp
atggacgtgggcagcatgccacctcttcctcctgtagaggtggttctggtgctcagcatt
gtggtgaggcctgaggcgaagagtgactggttgaaggatgtgccctggagtgagcaaatg
gaggaaggagtcgagcaggacctgagagtagaaaagagcaacaacaacaaagaacttgat
caatccagcaaagattcagaaggaaagaaagaacaagaaaagaataaataa