GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:56:43

Sequence gi568815585r:54340707_54541315 : 200609 bp : 35.28% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1695   1784   90  2  0   67  105    73 0.236   7.44
 1.02 Intr +  32802  32946  145  2  1   72   66   126 0.488   7.73
 1.03 Term +  38568  38641   74  1  2  122   32    31 0.069  -2.01
 1.04 PlyA +  38653  38658    6                               1.05

 2.03 PlyA -  39240  39235    6                               1.05
 2.02 Term -  41135  41017  119  0  2   61   49   149 0.939   6.02
 2.01 Init -  49748  49739   10  2  1   76   98     2 0.403   0.81
 2.00 Prom -  52203  52164   40                              -4.55

 3.00 Prom +  52927  52966   40                              -6.25
 3.01 Sngl +  65901  66197  297  2  0   43   47   198 0.928   6.69
 3.02 PlyA +  66807  66812    6                               1.05

 4.00 Prom +  69280  69319   40                              -7.35
 4.01 Sngl +  70991  71476  486  1  0   55   37   351 0.824  22.51
 4.02 PlyA +  71502  71507    6                               1.05

 5.04 PlyA -  73982  73977    6                               1.05
 5.03 Term -  75243  75079  165  0  0   66   47   105 0.268   1.13
 5.02 Intr -  75676  75494  183  1  0   74  -18   188 0.132   5.86
 5.01 Init -  92227  92147   81  1  0   49   91    79 0.410   5.32
 5.00 Prom -  98820  98781   40                              -5.65

 6.02 PlyA -  98881  98876    6                               1.05
 6.01 Sngl - 100609  99998  612  1  0   96   52   845 0.999  75.64
 6.00 Prom - 127543 127504   40                              -4.45

 7.00 Prom + 141614 141653   40                              -4.65
 7.01 Init + 147017 147107   91  1  1   78   62    99 0.886   7.00
 7.02 Term + 149808 150082  275  1  2   48   36   166 0.820   2.05
 7.03 PlyA + 150315 150320    6                               1.05

 8.00 Prom + 155698 155737   40                              -4.55
 8.01 Init + 156728 156863  136  1  1   57   88   159 0.906  13.15
 8.02 Intr + 159721 159890  170  2  2    6   70   138 0.163   2.54
 8.03 Term + 181825 182094  270  0  0   76   49   165 0.637   5.90
 8.04 PlyA + 182858 182863    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  29473  29490   18  0  0   63  110     8 0.897   0.72
S.002 Init + 181042 181101   60  0  0   82   65    50 0.871   3.40


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_1|102_aa
MGDLYHRSPTPGPWTCTGLWPVGNRVTQLETFDELFIQKQYLPAYWPQHTTPKGQSYSEI
DKDSSVQRKIIKKRKPHSVTKSPCINFDFLEMGFSVLSNPSP

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_1|309_bp
atgggtgatctatatcatcgttccccaacccctgggccatggacctgtactggcttatgg
cctgttgggaaccgggtcacacagctggagacttttgatgagctgtttattcagaagcaa
tacctgcctgcttattggccccagcataccactcctaaagggcagagttacagtgagatt
gacaaagattcctctgtacaaaggaagatcatcaagaagcgtaagccacattcagttact
aagtctccttgtatcaactttgattttctggaaatgggattctctgtgctctccaatcca
tcaccctag

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_2|42_aa
MVEGYMKTHRYRHEEKEKTGADSVVTQLQAKEHQGLPAANRR

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_2|129_bp
atggtggaaggctacatgaagacacacagatacagacatgaagagaaggagaaaacaggg
gcagacagtgtagtgacgcaactacaagccaaggaacaccaaggattgccagcagcgaac
agaagatag

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_3|98_aa
MSKAPEPTYKPGCKIAFFPTSVYDSWVTKFREKLIQETKLVLRMSSLDEKDLMQGDMTPI
LKLLRKWKNLGVSLGNCTEWYSNVYKHSSDAHKGYQEG

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_3|297_bp
atgagcaaggccccagaacctacatataagccaggatgcaaaattgccttcttcccaaca
tcagtctatgattcatgggtcactaaatttagagaaaaattgatccaagaaacaaaactg
gtactcagaatgtcctcactggatgaaaaggatctgatgcagggagatatgacaccaatc
ctgaagttgctgagaaagtggaaaaatctgggagtttcacttggaaactgtactgagtgg
tattcaaatgtatacaagcactcttcagatgcccacaagggataccaggaaggctag

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_4|161_aa
MIISIDAEKPFDGIQHRFMIKTLSKIGIQGTYLNVIKTIYDKPRASIILNVEKLKELLLR
TGTRQGWPLSPLLFNIVLEVLARAIRKEKEMKGIQISKEEVKLSLFADEMIVYFENLKDS
SRKLLELIKGFSKVSEYKINEPQISAPLYTNSDQAENQIKN

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_4|486_bp
atgatcatctcaatagatgcagaaaaaccatttgatggaatccagcatcgctttatgatt
aaaactctcagcaaaatcggcatacaagggacatacctcaatgtaataaaaaccatctat
gacaaacccagagccagcataatactgaatgtggaaaagttgaaagaactcctgctgaga
actggaacaagacaaggatggccactctcaccacttctcttcaacatagtactggaagtc
ctagccagagcaatcagaaaagagaaagaaatgaagggcatccaaatcagtaaagaggaa
gtcaaattgtcactgtttgctgatgaaatgatagtttactttgaaaaccttaaagactcc
tccagaaagctcctagaactgataaaaggattcagcaaagtttcagaatacaagattaat
gaaccacaaatcagcgctcctctatatactaacagtgaccaagctgagaatcaaatcaag
aactaa

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_5|142_aa
MGNEGELDMGVYKLPFMGYFFYLVEGQDKNSGPTEHGYKEGCNTVPPLTTTVRGNLPHTM
GSSRAKPALEPQAIAEQGDDRDVNVLPSPGAECVVTAAKRSMLEYKPGAAQQLSRQVISC
GELKPKQGTGRGVTSQRSRLAK

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_5|429_bp
atgggaaatgaaggggagctggacatgggtgtttacaaattgcctttcatgggatacttc
ttttacctggtggaaggccaggataagaactcgggacctaccgaacatgggtacaaagaa
ggctgtaacactgtgcctcctctgaccaccactgtcagagggaatctgccccacacaatg
ggaagcagcagggccaagccagccctggagccacaggccatagcagagcaaggggatgac
agagatgttaatgtgctgccctctccaggggcagagtgtgtagtcacagcagccaagaga
tccatgctggagtacaagccaggtgcagcccagcagctgagtagacaggtcatctcctgc
ggtgaactcaagcccaagcaaggcacaggcaggggtgtcaccagccagaggtctcggctg
gcaaagtga

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_6|203_aa
MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVCCEGINISGNFYRNKLNYLAFLRK
RMNTSPSRGPYHFRAPSRVFWRTVRGMLPHKTKRGQAALDRLKVSDGIPPPYDKKKRMVV
PAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQ
AEKNVEKKIDKYTEVLKTHGLLV

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_6|612_bp
atggcggaggtgcaggtcctggtgcttgatggtagaggccatctcctgggccgcctggcg
gccatcgtggctaaacaggtactgctgggccggaaggtggtggtcgtatgctgcgaaggc
atcaacatttctggcaatttctacagaaacaagttgaactacctggctttcctccgcaag
cggatgaacaccagcccttccagaggtccctaccacttccgggctcccagccgcgtcttc
tggcggacggtgcgaggtatgctgccccacaagaccaagcgaggccaggccgctttggac
cgtctcaaggtgtctgacggcatcccaccgccctacgacaagaaaaagcggatggtggtt
cctgctgccctcaaggtcgtgcgtctgaagcctacaagaaagtttgcctatctggggcgc
ctggctcatgaggttggctggaagtaccaggcagtgacagccaccctggaggagaagagg
aaagagaaagccaagatccactaccggaagaagaaacagctcatgaggctacggaaacag
gccgagaagaacgtggagaagaaaattgacaaatacacagaggtcctcaagacccacgga
ctcctggtctga

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_7|121_aa
MDLNQEENSELPEKEFRRLIIEQIKEAPEKDAEKAFDKIQHDCMTKSLSKIDVEGTYVNV
IKAIYNKPTANILNGEKVESIPPENWNKKRMYTFTTSMQHSSGSPSQSNQTRERNKGHPN
W

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_7|366_bp
atggatctaaaccaagaagaaaactctgaattgccagaaaaagaattcagaagattgatt
attgagcaaatcaaggaggcaccagagaaagatgcagaaaaagcatttgacaaaatccaa
catgactgtatgactaaaagcctcagcaaaatcgacgtagaagggacatacgttaatgta
ataaaagccatctacaacaaacccacagccaacatactgaatggggaaaaagttgaaagc
attccccctgagaactggaacaagaaaaggatgtacaccttcaccacttctatgcaacat
agttctggaagtcctagccagagcaatcagacaagagaaagaaataaagggcatccaaat
tggtaa

>gi568815585r:54340707_54541315|GENSCAN_predicted_peptide_8|191_aa
MSECLELSRDLLNGCDQNSDSDIDSEVQDEVVSDGDEKLTGNWSKGSRTTPEDPGARLAL
KNQGFRTSHADPGSTPTPVDLGFMPSPMDSSLSCGLSVVLALDFDLLPKLTKFKRKQNPI
VNVACHLTVSGQCCSATQCHPGFTKVVDESCNRDRMRMCQVLRHQGFYFRAMTQSDECQN
VIKAASFFHPA

>gi568815585r:54340707_54541315|GENSCAN_predicted_CDS_8|576_bp
atgagtgaatgtttggaactttctagagacttgttgaatggttgtgaccaaaattctgat
agtgatatcgacagtgaagtccaggatgaagtggtctcagatggagatgaaaaacttact
gggaactggagtaaagggtccaggaccaccccagaagaccctggtgccaggctagccctc
aaaaatcaaggctttagaactagccatgcagacccaggctccacaccaacccctgtggac
ttaggattcatgccttcccccatggactcaagcctgtcctgtggactcagtgttgtcctg
gcgctggattttgacttattacccaaattaacaaaatttaaaagaaaacaaaaccctata
gtgaacgttgcttgtcacctcactgtttcaggacagtgctgttcagccacacagtgtcac
cctggattcactaaggtggttgatgagtcctgcaaccgtgatcggatgcggatgtgtcag
gttctcaggcaccagggattttattttagagctatgacacaaagtgatgaatgtcagaat
gttataaaggcagcatcatttttccatccagcttaa