GENSCAN 1.0 Date run: 6-Nov-116 Time: 08:43:33 Sequence gi568815585r:45093791_45294567 : 200777 bp : 39.96% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 12469 12639 171 1 0 82 54 118 0.492 5.94 1.02 Intr + 26732 26931 200 2 2 92 90 190 0.832 17.67 1.03 Intr + 29430 29561 132 1 0 63 28 148 0.418 6.00 1.04 Intr + 36087 36253 167 1 2 -1 100 125 0.059 3.56 1.05 Intr + 42943 43016 74 0 2 82 108 89 0.251 7.59 1.06 Intr + 55980 55998 19 0 1 124 94 1 0.213 -0.00 1.07 Intr + 57897 58041 145 2 1 67 111 100 0.874 9.13 1.08 Intr + 62373 62434 62 1 2 53 119 -14 0.421 -4.27 1.09 Term + 62827 62901 75 0 0 87 54 98 0.542 3.16 1.10 PlyA + 63077 63082 6 1.05 2.05 PlyA - 63958 63953 6 1.05 2.04 Term - 64387 64237 151 0 1 82 48 81 0.061 -0.10 2.03 Intr - 85330 85168 163 2 1 39 75 131 0.274 5.01 2.02 Intr - 89417 89292 126 0 0 29 52 101 0.472 0.33 2.01 Init - 95420 95345 76 2 1 83 99 46 0.967 6.50 2.00 Prom - 95597 95558 40 -3.65 3.02 PlyA - 95947 95942 6 1.05 3.01 Sngl - 100777 99998 780 1 0 71 32 602 0.994 48.64 3.00 Prom - 107804 107765 40 -4.55 4.00 Prom + 112501 112540 40 -4.15 4.01 Init + 112777 112822 46 0 1 68 41 13 0.004 -4.50 4.02 Intr + 113634 113715 82 1 1 73 81 110 0.006 6.58 4.03 Intr + 159081 159180 100 0 1 84 101 88 0.031 8.89 4.04 Intr + 173443 173586 144 0 0 70 68 141 0.457 9.86 4.05 Term + 189652 189771 120 0 0 88 48 136 0.619 7.09 4.06 PlyA + 190191 190196 6 1.05 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815585r:45093791_45294567|GENSCAN_predicted_peptide_1|348_aa XREHMSEQVRDLDGCFGCFQEQAACRPGSSAQVGVPATPEAPEGMLQCSFSSAVCGQCVL AGKERRLFASQRGLSFVPDARSSALRLLGSLLHPARLHRLQTHGRARGTRLDRRQTEHRS VASQAARLTKEDDHPDRGGLVFSQGYMYGCTPLLEPPKKLSRRAYGRPGRDLTDKMVFKQ GRKEFMGLPLQIPMGRVFRTEITANASLDGTSPQMFTGLCGLSKVPKYLSQQWAKASGRG EVGKLRIAKTQGRTEVSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE SSSDIFGAKPCARIRLASCALRQLVSRPELEVILTAFGDESAVRKLED >gi568815585r:45093791_45294567|GENSCAN_predicted_CDS_1|1047_bp nncagggagcacatgagtgagcaagtgcgggatctggatggctgctttgggtgcttccag gagcaggctgcgtgcaggcctggcagcagtgcccaggttggggtgcctgcaacccctgaa gctccagagggcatgttacagtgttcttttagctctgccgtctgtggacagtgtgttctg gcaggtaaggaacgccggctcttcgcctctcagcgcggcttgtcctttgttccggacgcc cgctcctcagccctgcggctcctggggtcgctgctgcatcccgcacgcctccaccggctg cagacccatggccgagcgcggggaactcgacttgaccggcgccaaacagaacacaggagt gtggctagtcaagctgcacgcttgaccaaagaggatgaccatccggatagaggaggactg gtcttcagtcaagggtatatgtatggttgtactcccctgctagaacctccaaagaagctt tcaagaagagcttatggcaggccgggaagggacctcactgataagatggtctttaagcag ggacgtaaagaatttatgggcttgcccttgcagatacccatgggaagagtgttccggaca gaaataacagcaaatgcgtctttagatgggacgtcaccgcaaatgttcacaggtctgtgt ggtttgagtaaggttcctaaatatttgtcacagcaatgggctaaagcctctggaagaggt gaagttgggaaactgcggattgccaagactcaaggaaggactgaggtgtcatttactttg aatgaggatcttgcaaatattcatgatattggtggaaaaccagcttcagtcagtgctcct agagaacatccatttgtcttgcaaagtgttggaggacagacattaacagtatttactgag agctcatcagatatttttggtgctaagccctgtgctagaataagattagcctcctgtgca ctgaggcaactggtaagtcgaccagaattagaggttattttgacagcttttggtgatgaa tcggctgtgaggaaattggaagattga >gi568815585r:45093791_45294567|GENSCAN_predicted_peptide_2|171_aa MDEAGNHHSRQNITRTENQTPHVLTHEETGIPRVKQFACSHTATKQPSKCQALNHYVIMP SDQILELNAAEVMLHQFQAQSLRDLAAFAFAFLENSHHVKKHGLDLLNDESTKEKPQRTE QRSLSQHVGIMGAKIQDEIWVGTETNHIKWYPEMCICDSYYRNNKMTKYEK >gi568815585r:45093791_45294567|GENSCAN_predicted_CDS_2|516_bp atggatgaagctggaaaccatcattctcggcaaaatatcacaaggacagaaaaccaaaca ccacatgttctcactcatgaagaaacagggatccccagagttaagcaatttgcctgcagt cacacagcaaccaagcaaccttcaaagtgccaagctcttaaccactatgtgataatgcct tcggaccagatcctggaactcaatgcagctgaagtgatgctgcaccagttccaagcccag tccttaagagacttagcagcttttgcttttgctttcttggaaaacagccaccatgtaaag aagcatgggctagacctactaaatgacgagagcactaaagagaaaccacaaaggacagag caaaggtccctctcacaacatgtgggaattatgggagctaaaattcaagatgagatttgg gtggggacagagacaaaccatatcaagtggtatccagaaatgtgtatatgtgattcctac tacagaaacaacaaaatgaccaaatacgagaaataa >gi568815585r:45093791_45294567|GENSCAN_predicted_peptide_3|259_aa MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK GLAEEVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL DGFPEEFSISSNIIQFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLT SLDCSKGSIVHSDALHFIK >gi568815585r:45093791_45294567|GENSCAN_predicted_CDS_3|780_bp atggagcgtaaaataaacagaagagaaaaagaaaaggagtatgaagggaaacacaacagc ctggaagatactgatcaaggaaagaactgcaaatccacactgatgaccctcaacgttggt ggatatttatacattactcaaaaacaaacactgaccaagtacccagacactttccttgaa ggtatagtaaatggaaaaatcctctgcccgtttgatgctgatggtcattatttcatagac agggatggtctcctcttcaggcatgtcctaaacttcctacgaaatggagaacttctattg cccgaagggtttcgagaaaatcaacttcttgcacaagaagcagaattctttcagctcaag ggactggcagaggaagtgaaatccaggtgggagaaagaacagctaacacccagagagact actttcttggaaataacagataaccacgatcgttcacaaggattaagaatcttctgtaat gctcctgatttcatatcaaaaataaagtctcgcattgttctggtgtccaaaagcaggctg gatggatttccagaggagttttcaatatcgtcaaatatcatccaatttaaatacttcata aagtctgaaaatggcactcgacttgtactaaaggaagacaacacctttgtctgtaccttg gaaactcttaagtttgaggctatcatgatggctttaaagtgtggctttagactgctgacc agcctggattgttccaaagggtcaattgttcacagcgatgcacttcattttatcaagtaa >gi568815585r:45093791_45294567|GENSCAN_predicted_peptide_4|163_aa MTVSNHSHTFPGYKADKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLD KVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDIT KQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD >gi568815585r:45093791_45294567|GENSCAN_predicted_CDS_4|492_bp atgactgtttctaaccacagtcatacatttccagggtataaagctgataagctgtcattg gaaggaatagtggtacaaagagctgaatgccgaccagctgccagtgaaaactacatgcga ttaaaaagattgcaaatagaagagtcttccaaaccagtgaggctatcacaacagctggac aaagttgtaacaaccaattacaaacctgttgctaatcatcaatacaatatcgaatatgaa aggaaaaagaaagaagacggaaagcgagctcgagctgataaacaacatgttttagacatg ctattttcagcctttgagaaacatcaatactataatcttaaggacttggtggacatcaca aagcaacctgtggtgtacctgaaggaaatcttaaaagaaattggtgttcagaatgtaaaa gggatccacaaaaacacatgggagctgaagccagagtacagacactatcaaggagaagaa aagagtgactaa