GENSCAN 1.0	Date run:  7-Nov-116	Time: 23:48:53

Sequence gi568815585r:27335678_27540448 : 204771 bp : 44.99% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9240   9279   40  2  1   83   67    29 0.201   0.69
 1.02 Intr +  19569  19712  144  1  0   56   81    44 0.043   0.75
 1.03 Intr +  29065  29098   34  2  1   97  105     6 0.162   0.48
 1.04 Intr +  36478  36584  107  1  2   46  109    78 0.196   5.56
 1.05 Intr +  37695  37882  188  1  2   71   46    65 0.157   0.01
 1.06 Term +  47930  48121  192  1  0   31   46   217 0.710   9.22
 1.07 PlyA +  48248  48253    6                               1.05

 2.09 PlyA -  50756  50751    6                               1.05
 2.08 Term -  51847  51684  164  2  2   87   50    76 0.135   1.80
 2.07 Intr -  64866  64691  176  2  2   45  106    39 0.182   0.98
 2.06 Intr -  69336  69129  208  1  1   37  103    86 0.399   3.14
 2.05 Intr -  72720  72567  154  0  1   81   26    88 0.732   1.55
 2.04 Intr -  73058  72956  103  1  1   55   62    98 0.573   4.08
 2.03 Intr -  75921  75869   53  0  2   85   94    40 0.905   2.01
 2.02 Intr -  77818  77684  135  1  0   75   43    51 0.490   0.06
 2.01 Init -  85107  85054   54  0  0   86   89    51 0.726   6.29
 2.00 Prom -  86018  85979   40                              -9.26

 3.00 Prom +  87324  87363   40                              -5.96
 3.01 Init +  88886  89007  122  1  2   68   -9   159 0.389   1.87
 3.02 Intr +  89027  89261  235  2  1   18   78   242 0.493  13.89
 3.03 Intr +  91415  91515  101  1  2   69   75    68 0.863   2.51
 3.04 Intr +  94193  94289   97  2  1   58   92    59 0.870   3.31
 3.05 Intr +  94856  94944   89  1  2   51   58    86 0.554   0.67
 3.06 Term +  97054  97141   88  1  1   75   38    88 0.580  -0.37
 3.07 PlyA +  97533  97538    6                              -0.45

 4.14 PlyA -  97814  97809    6                               1.05
 4.13 Term - 100216  99998  219  1  0  106   28    54 0.676  -1.76
 4.12 Intr - 101596 101439  158  2  2   51  115    69 0.824   5.63
 4.11 Intr - 104611 104312  300  2  0   10   82   247 0.047  13.01
 4.10 Intr - 114464 114387   78  0  0  103   75    45 0.580   4.22
 4.09 Intr - 114935 114832  104  1  2   66   95    75 0.681   5.82
 4.08 Intr - 115593 115430  164  0  2   78   33   145 0.651   6.77
 4.07 Intr - 133181 133082  100  1  1  113   89    71 0.570   9.81
 4.06 Intr - 136970 136895   76  0  1   69   96     8 0.454  -1.73
 4.05 Intr - 138726 138610  117  1  0   44   61    87 0.489   2.04
 4.04 Intr - 139353 139208  146  2  2   76   97    45 0.537   4.13
 4.03 Intr - 141478 141418   61  2  1  100   75    33 0.394   0.99
 4.02 Intr - 158245 158124  122  0  2   89   92    81 0.633   8.74
 4.01 Init - 158736 158657   80  0  2   73   31    42 0.221  -2.37
 4.00 Prom - 159965 159926   40                              -5.06

 5.00 Prom + 160755 160794   40                              -3.26
 5.01 Init + 163520 163637  118  1  1   21  116    83 0.107   4.76
 5.02 Term + 174985 175067   83  2  2   77   49   114 0.806   4.26
 5.03 PlyA + 175182 175187    6                               1.05

 6.00 Prom + 185370 185409   40                              -4.96
 6.01 Init + 192583 192641   59  0  2   79   97    27 0.309   3.50
 6.02 Intr + 197472 197759  288  0  0   50   73   196 0.202  10.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 104474 104312  163  2  1   91   82   172 0.841  16.79
S.002 Sngl + 107239 107433  195  0  0   92   37   134 0.846   3.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_1|234_aa
MPGGLRKLTIVEQATVMELEAIILSEMTQKVKYCILSLTSGSYTMDTYGQAEWKNRQEMP
KGPADFPFRKGLRGQLSGKSAAVSAAGTHTPGGGGGGEVGTKIIYYSTGRSLAEDYGDGL
SNKTAWISILVPAPGGLTSLQFRFFTCKIGIRILLEELNKLRSMEYLEQGLTTLADLPHP
YPGPIKTRDPSRQTHKPLYVEKNKSMKEDKRLDIERHQGEHAGRRALRQMLAGH

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_1|705_bp
atgcctggaggcctcaggaaacttacaatcgtggagcaagcaacagtgatggaactggag
gccattatcctaagtgaaatgactcagaaagttaaatactgcatattgtcacttacaagt
gggagctatacaatggatacctatggacaagcagagtggaaaaatagacaggaaatgcca
aaaggtcctgctgacttccccttcagaaaaggactgagagggcagctctctgggaagtcg
gcagctgtgtctgcagccggcactcacacacctggcggggggggggggggggaggtggga
accaagatcatctactacagcacaggaagaagtttagcagaggattatggagatggtctc
agcaacaagactgcctggatttccatcctagttcctgccccaggtggcttaacctctctg
cagttccgtttcttcacctgtaaaatagggataagaattctgttggaagaattaaataag
ctaagaagtatggagtacttggaacaaggtctgaccaccctggccgaccttccacaccct
tatcctggacctataaaaacccgagaccctagcaggcagacacacaagccgctgtacgtg
gagaaaaacaaatcgatgaaagaagacaagcggctggacatcgagagacatcaaggggag
catgccggcagaagagcactcagacagatgctggcaggccattga

>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_2|348_aa
MKVNLEGELKQNYGVPAQMFFGHLRVACCASPKAMLRACATEPSSSSLSIKGIETTGASA
ILVIRKLGHRVVKRMAQSHSYFCTLNCTIPINPETRCFYVFIGYNYLQASSGNRKASPPC
QSVELFKQTNHILPWKPGSTSSSCYYKASSHSPYWFIQCRRCVALHTSHPGANLIFAQQT
RRRLPNLSPVPTRASEPADFLPGPAGLAHVLAPGSASLFLLSHGLTCNTHISPVRPALIG
AFYKPLGSYRAVISVFYNPAYADWCILQSSCKTEKFSKSPLNPGSPAIFTSQHLASYGHT
RLGQRGAASQRRQEMGISTWRSPQPSPPPQRLSPLHTGGATSYQSHKT

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_2|1047_bp
atgaaggtcaacctcgaaggtgaacttaaacagaactatggtgtgcctgctcaaatgttt
tttgggcatctccgtgtggcatgctgtgccagccccaaggcgatgctcagggcatgtgcc
acagaaccttccagctcctcgctgtctattaaaggcattgagacaactggggccagtgcc
atattagtgataaggaaactgggtcaccgagtggttaagcgaatggcccagtcacacagc
tatttctgtaccctcaactgtaccattcccatcaatccagagacccggtgcttttacgtc
ttcattgggtataactatctccaggcttcttctggaaatagaaaggcttcacctccttgc
cagtctgtggaattattcaaacaaaccaatcacatcctcccctggaaaccagggagcacc
tcatcctcctgttactacaaagcctcctctcacagcccctactggttcatccagtgccgc
cgctgtgtggccctgcacacctcccaccccggcgccaacctgatctttgcccagcagacg
cggaggcgcctgcccaacctcagccctgtgcccacgagggcctcagagcccgcagacttc
ctgccgggacctgctggccttgcccatgttttagctcctggctctgctagtcttttcctg
ctgtctcatggtctcacgtgtaacactcacatctccccagtgagaccagcactgattggt
gcattttacaaacctctaggtagctacagagcagtgattagtgtgttttacaatcctgcc
tatgctgattggtgcattttacaatcctcttgtaagacggaaaagttctccaagtcccca
ctcaacccaggaagtccagctatcttcacctctcaacacctggcctcctatggccacaca
cggctgggccagaggggagctgccagccagaggcgacaggaaatgggcattagcacctgg
cgcagtcctcaaccctcgcctcctccccagcgcctcagccctttgcacactggtggtgca
accagttaccaatcgcataagacttag

>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_3|243_aa
MRSSGADAGRCLVTARAPGSVPASREGSAGSRGPGAPVPGTAPGPGLGGAGALDPPAVVA
ESVSSLTIADAFIAAGESSAPTPPRPALPRRFICSFPDCSANYSKAWKLDAHLCKHTGER
PFVCDYEGCGKAFIRDYHLSRHILTHTGEKPFVCAANGCDQKFNTKSNLKKHFERKHENQ
QKQYICSFEDCKKTFKKHQQLKIHQCQHTNEPLFKCTQEGCGKHFASPSKLKRHAKAHEG
VYG

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_3|732_bp
atgcgcagcagcggcgccgacgcggggcggtgcctggtgaccgcgcgcgctcccggaagt
gtgccggcgtcgcgcgaaggttcagcagggagccgtgggccgggcgcgccggttcccggc
accgcgcctggccctgggcttggaggcgccggcgccctggatccgccggccgtggtcgcc
gagtcggtgtcgtccttgaccatcgccgacgcgttcattgcagccggcgagagctcagct
ccgaccccgccgcgccccgcgcttcccaggaggttcatctgctccttccctgactgcagc
gccaattacagcaaagcctggaagcttgacgcgcacctgtgcaagcacacgggggagaga
ccatttgtttgtgactatgaagggtgtggcaaggccttcatcagggactaccatctgagc
cgccacattctgactcacacaggagaaaagccgtttgtttgtgcagccaatggctgtgat
caaaaattcaacacaaaatcaaacttgaagaaacattttgaacgcaaacatgaaaatcaa
caaaaacaatatatatgcagttttgaagactgtaagaagacctttaagaaacatcagcag
ctgaaaatccatcagtgccagcataccaatgaacctctattcaagtgtacccaggaagga
tgtgggaaacactttgcatcacccagcaagctgaaacgacatgccaaggcccacgagggt
gtgtacggatag

>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_4|574_aa
MGLSTKELGNSRAQGKPELGLGREKALAELSNQHLQMGYRCDREIDPFHLCGSQVGFGPA
IAPYPVGTNTRAYGSGQGQVVVMLMELRRKRRPFPGSTLFLLCVPDQGLRCAVAATLSLD
VFAGEYPRLVHDGEAVEVDEAAGKLRLLCFRSQHISVSNATVMKNSGLKPQIWKKSKWTQ
FGLMTCFAPSKQCTGLGQPLSTQLKPSSLAVIIVSVIGFLCSQQQALNQTPGISESKHSR
YEARLGGFTTVDSQSALEEFLIEEEKEGGHGAQTPSTRLSSRLHGSGSGTRGEAPPTTES
EGDSPQIRCTCVRYSMSIACPSTGGRRRRLTNNRVGGSRKCSCGLLPGTAFSTAEDTQNE
GKKTKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTE
PAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIK
KKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRAFS
KNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_4|1725_bp
atgggcttgagcacaaaagaactggggaactcgagggcccagggaaagccagagctgggc
ctgggcagagagaaagctttggcagaactttccaatcagcatctgcaaatgggttacagg
tgtgaccgagaaattgatcccttccacctttgcggcagccaagtaggatttgggccagcc
attgccccatatccagttggcactaacaccagggcttatggctcaggacaaggtcaggtg
gtggtaatgctgatggagctgaggaggaagaggaggcccttcccagggagcaccctcttc
cttctctgtgtccctgaccaaggcctgaggtgtgccgtggcggccacgctctccctggat
gttttcgctggggagtatccgaggctggtccatgacggtgaggcagtagaagtagatgaa
gcagcaggaaagctgaggctgctctgtttcagaagccagcacatctctgtatcaaatgcc
acggtcatgaaaaactcaggccttaaaccccagatttggaagaaaagcaaatggacacag
tttggtttgatgacatgctttgctcccagcaagcagtgcacaggcctgggccagcctctc
agcacccaattaaagccttcttctttggcagtaatcatcgtctcagtcattggctttctg
tgcagccagcagcaggccctaaaccaaaccccaggcatttcagaatccaaacattccagg
tatgaagccagattaggtggcttcacgactgtggactcgcagtctgcccttgaggaattt
cttattgaagaagaaaaagaggggggacacggggcccagacccccagcacccggctttcg
agcaggctccacgggtccgggtccgggacgcggggtgaagccccgcccactacggagagc
gaaggggactcgccgcagatccgctgtacttgcgtccgctacagtatgtcaatcgcttgc
cccagcacaggtgggcgtcgccgccgacttaccaacaaccgggtcgggggctcccggaag
tgctcttgcggcttactgcctggcacagcctttagtaccgctgaagacacccagaatgaa
ggaaaaaagacaaaaaagaataaaacagcttttagtaacgttggaagaaaaattagtcag
cgagttattcacttatttgatgagaagggcaatgatttgggaaacatgcaccgagcaaat
gtgattagacttatggatgagcgagacctgcgactggttcaaaggaacaccagcacagaa
cctgcagagtatcagctcatgacaggattgcagatcctccaggagcggcagaggctgagg
gagatggagaaggcgaaccccaaaactggaccaaccctgagaaaggaactgattttgtct
tcaaatattggacaacatgatttggacacaaagactaaacagattcagcagtggattaag
aaaaaacacctagtccagattaccataaagaaaggaaaaaatgtagacgtgtcagaaaat
gaaatggaggagatatttcatcaaatactccagactatgcctggaatagctacattctca
tctaggccacaagctgttcaaggaggaaaagctttaatgtgtgttcttcgtgctttcagc
aaaaatgaggagaaggcatataaagaaactcaagagacccaggaaagagacactttgaac
aaagaccatggaaatgataaggaatcaaatgttctgcatcagtaa

>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_5|66_aa
MPPPEKEKTTSKKSHQKVDLIPASKGYSDAAVSLSKSYKVPTYIAGAISHIPPVSFTLTT
HQLASP

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_5|201_bp
atgcctcccccagagaaggaaaagacgaccagcaagaaaagtcatcagaaagttgattta
attcctgcatccaaaggttattctgacgctgctgtttctctttctaaatcctacaaagtg
cccacctacattgctggtgccatctcccacatccccccggtgtccttcacactcaccaca
caccagctcgccagtccttga

>gi568815585r:27335678_27540448|GENSCAN_predicted_peptide_6|116_aa
MGVAHEEALMNGLGHPLGDKYPTLPAAASLTSCTGSHRLQTGCKHRGAASEGGQSIEPAE
GAETRPSELGTSRASADHWWCPSSQGSDARLLQSAEKTNRTLHCYFLPDAHESHLX

>gi568815585r:27335678_27540448|GENSCAN_predicted_CDS_6|348_bp
atgggggtggctcatgaggaggccctcatgaatggcttgggccatccccttggtgataaa
tatccaacccttcctgctgcagcttccctgacctcctgcaccgggagccaccggctgcaa
acaggctgcaaacaccggggagctgcaagcgagggcggccagtccatcgagccagcagag
ggcgctgaaacgcggcccagtgaactagggacgtccagggccagcgctgaccactggtgg
tgcccgagctcccagggctctgatgcccggctgctccagtccgcagagaaaactaaccgg
acactccactgctactttcttcccgatgctcatgagtctcacctttgn