GENSCAN 1.0	Date run:  2-Nov-116	Time: 23:56:33

Sequence gi568815584f:55129217_55329678 : 200462 bp : 40.54% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +     44     84   41  1  2   46   89   104 0.439   2.40
 1.02 Intr +    239    431  193  2  1   64   63   207 0.257  14.37
 1.03 Intr +   8829   9152  324  2  0  114   85   163 0.770  13.65
 1.04 Term +  15900  16055  156  2  0   73   33   146 0.969   4.55
 1.05 PlyA +  16177  16182    6                               1.05

 2.15 PlyA -  16234  16229    6                               1.05
 2.14 Term -  19326  19135  192  0  0   40   38    98 0.289  -3.56
 2.13 Intr -  21632  21583   50  0  2  105   89    24 0.666   1.68
 2.12 Intr -  22725  22479  247  0  1  105   94   170 0.998  15.41
 2.11 Intr -  23431  23374   58  0  1  109  103    89 0.953  10.47
 2.10 Intr -  25590  25401  190  1  1   79   68   185 0.910  13.32
 2.09 Intr -  29525  29306  220  2  1   87   92   167 0.998  13.95
 2.08 Intr -  33859  33755  105  1  0   57  110    23 0.616   0.89
 2.07 Intr -  40343  40183  161  0  2   87   91   178 0.841  16.79
 2.06 Intr -  51562  51440  123  2  0   94   81    73 0.957   6.84
 2.05 Intr -  52081  51997   85  1  1   41   97   135 0.999   8.17
 2.04 Intr -  54537  54344  194  1  2   72   94   115 0.904   8.79
 2.03 Intr -  59964  59726  239  2  2   89  108   147 0.129  13.14
 2.02 Intr -  69798  69632  167  0  2  109   71    59 0.091   4.14
 2.01 Init -  82453  82394   60  1  0   61  100    36 0.153   1.57
 2.00 Prom -  85277  85238   40                              -6.15

 3.00 Prom +  85913  85952   40                              -2.85
 3.01 Sngl + 100001 100465  465  1  0   99   38   405 0.994  32.49
 3.02 PlyA + 100730 100735    6                               1.05

 4.03 PlyA - 102017 102012    6                               1.05
 4.02 Term - 105786 105331  456  0  0   10   34   899 0.701  70.84
 4.01 Init - 111639 111412  228  0  0   50   39   218 0.864  11.52
 4.00 Prom - 118114 118075   40                              -5.55

 5.00 Prom + 121745 121784   40                              -5.75
 5.01 Sngl + 125477 125929  453  1  0   61   32   237 0.676  11.35
 5.02 PlyA + 127381 127386    6                               1.05

 6.05 PlyA - 128116 128111    6                               1.05
 6.04 Term - 133940 133875   66  2  0   81   39    79 0.320  -0.74
 6.03 Intr - 135833 135646  188  0  2   86   47   149 0.419   9.09
 6.02 Intr - 142944 142792  153  1  0   52   37   254 0.043  15.82
 6.01 Init - 155753 155705   49  2  1   69  116    17 0.482   3.76
 6.00 Prom - 156825 156786   40                              -3.35

 7.00 Prom + 158512 158551   40                             -10.55
 7.01 Init + 158651 158874  224  1  2   90   60   136 0.261   9.08
 7.02 Term + 169412 170027  616  2  1  -81   49   943 0.215  66.45
 7.03 PlyA + 170257 170262    6                               1.05

 8.00 Prom + 175191 175230   40                              -1.65
 8.01 Init + 178097 178184   88  1  1   38  113    76 0.520   5.95
 8.02 Term + 180084 180175   92  1  2   74   38    50 0.429  -4.50
 8.03 PlyA + 180212 180217    6                               1.05

 9.03 PlyA - 180477 180472    6                               1.05
 9.02 Term - 183560 183408  153  2  0   54   54   182 0.447   8.34
 9.01 Init - 184251 184042  210  0  0   63   57   250 0.704  18.23
 9.00 Prom - 189469 189430   40                              -2.95


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  12884  13013  130  0  1  100   64    94 0.821   7.03
S.002 Intr +  13368  13533  166  0  1   80  106    53 0.996   5.34
S.003 Init -  40749  40701   49  0  1   76   99    36 0.874   2.66
S.004 Intr -  50483  50413   71  0  2   62   75   102 0.874   4.28
S.005 Init -  59963  59726  238  2  1   60  108   147 0.838  12.12
S.006 Term - 142944 142787  158  1  2   52   49   264 0.892  16.01


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_1|237_aa
HLLASSRPEPANERSGAAGSDLGPGQSPLIIEGAGVRGRLAAPYETHTRPRGGTGHLLRS
LVGFAAVAPPPPALCGPRLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQ
APPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYG
APAGPLIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_1|714_bp
cacctcctcgccagcagccgtccggagccagccaacgagcggagcggggcggcgggcagc
gatctgggcccggggcagtcgcctttgattatcgagggcgctggcgttcggggaaggttg
gcagcaccttacgagacccacacacgtccccggggcggcacgggccaccttctgcggagc
ctcgtgggcttcgccgccgtcgcacctccgccgcctgcgctctgcggccccagactccat
gatgcgttatctgggtctggaaacccaaaccctcaaggatggcctggcgcatgggggaac
cagcctgctggggcagggggctacccaggggcttcctatcctggggcctaccccgggcag
gcacccccaggggcttatcctggacaggcacctccaggcgcctaccctggagcacctgga
gcttatcccggagcacctgcacctggagtctacccagggccacccagcggccctggggcc
tacccatcttctggacagccaagtgccaccggagcctaccctgccactggcccctatggc
gcccctgctgggccactgatacaagtactggttgaacctgaccacttcaaggttgcagtg
aatgatgctcacttgttgcagtacaatcatcgggttaaaaaactcaatgaaatcagcaaa
ctgggaatttctggtgacatagacctcaccagtgcttcatataccatgatataa

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_2|696_aa
MRIGLMGSLMPVAPSLWEAKLEAQGCCPALSTPLSRDCIIIAKQAYNLLRLPSTYIMAQR
NYSFSELFPETRCHDKMSSSHFASRHRKDISTEMIRTKIAHRKSLSQKENRHKEYERNRH
FGLKDVNIPTLEGRILVELDETSQGLVPEKTNVKPRAMKTILGDQRKQMLQKYKEEKQLQ
KLKEQREKAKRGIFKVGRYRPDMPCFLLSNQNAVKAEPKKIDNESDVRAIRPGPRQTSEK
KVSDKEKKVVQPVMPTSLRMTRSATQAAKQVPRTVSSTTARKPVTRAANAKDLIRTAVGQ
TRLLMKERFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEES
GWQVNNNMNHNMNKNVFRKKVVSGIASKPKQDDAGRIAARNRLAAIKNAMRERIRQEECA
ETAVSVIPKEVDKIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNE
MGIPQQTTSPENAGPQNTKSEHVKKTLFLSIPESRSSIEDAQCPGLPDLIEENHVVNKTD
LKVDCLSSERMSLPLLAGGVADDINTNKKEGISDVVEGMELNSSITSQDVLMSSPEKNTA
SQNSILEEGETKISQSELFDNKSLTTECHLLDSNVEELIGETLDGYFTDFSGFVLQPGLN
CSNPFTQLERRHQEHARHISFGGNLITFSPLQPGEF

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_2|2091_bp
atgagaataggcctgatgggctcgctcatgcctgtagccccatcactctgggaggccaag
cttgaagctcagggctgctgtccagccctgtccactcccctgtcaagggattgtatcatc
attgcgaaacaagcatataatcttctacgacttccaagtacatacataatggcacaaagg
aattatagtttttcagagctcttccctgaaaccagatgccatgacaagatgtcttcatca
cattttgccagtcgacacaggaaggatataagtactgaaatgattagaactaaaattgct
cataggaaatcactgtctcagaaagaaaatagacataaggaatacgaacgaaatagacac
tttggtttgaaagatgtaaacattccaaccttggaaggtagaattcttgttgaattagat
gagacatctcaagggcttgttccagaaaagaccaatgttaagccaagggcaatgaaaact
attctaggtgatcaacgaaaacagatgctccaaaaatacaaagaagaaaagcaacttcaa
aaattgaaagagcagagagagaaagctaaacgaggaatatttaaagtgggtcgttataga
cctgatatgccttgttttcttttatcaaaccagaatgctgtgaaagctgagccaaaaaag
attgataacgagagtgatgttcgagcaatccgacctggtccaagacaaacttctgaaaag
aaagtgtcagacaaagagaaaaaagttgtgcagcctgtaatgcccacgtcgttgagaatg
actcgatcagctactcaagcagcaaagcaggttcccagaacagtctcatctaccacagca
agaaagccagtcacaagagctgctaatgctaaagatcttattcgcacagcagttggtcaa
acaagactccttatgaaggaaaggtttaaacagtttgaaggactggttgatgattgtgaa
tataaacgaggtataaaggagactacctgtacagatctggatggattttgggatatggtt
agttttcagatagaagatgtaatccacaaattcaacaatctgatcaaacttgaggaatct
gggtggcaagtcaataataatatgaatcataatatgaacaaaaatgtctttaggaaaaaa
gttgtctcaggtatagcaagtaaaccaaaacaggatgatgctggaagaattgcagcgaga
aatcgcctagctgccataaaaaatgcaatgagagagagaattaggcaggaagaatgtgct
gaaacagcagtttctgtgataccaaaggaagttgataaaatagtgttcgatgctggattt
ttcagagttgaaagtcctgttaaattattctcaggactttctgtctcttctgaaggccct
tctcaaagacttggaacacctaagtctgtcaacaaagctgtatctcagagtagaaatgag
atgggcattccacaacaaactacatcaccagaaaatgccggtcctcagaatacgaaaagt
gaacatgtgaagaagactttgtttttgagtattcctgaaagcaggagcagcatagaagat
gctcagtgtcctggattaccagatttaattgaagaaaatcatgttgtaaataagacagac
ttgaaggtggattgtttatccagtgagagaatgagtttgcctcttcttgctggtggagta
gcagatgatattaatactaacaaaaaagaaggaatttcagatgttgtggaaggaatggaa
ctgaattcttcaattacatcacaggatgttttgatgagtagccctgaaaaaaatacagct
tcacaaaatagcatcttagaagaaggggaaactaaaatttctcagtcagaactatttgat
aataaaagtctcactactgaatgccaccttcttgattcaaatgttgaagaattaattggt
gaaactcttgatggatactttactgacttctctggatttgttctccagccaggtctaaac
tgcagtaatccatttactcagctggagaggagacatcaagaacatgccagacacatttct
tttggtggtaacctgattactttttcacctctacaaccaggagaattttga

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_3|154_aa
MAASRRLMKELEEIRKCGMKNFCNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPKHP
LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_3|465_bp
atggcggccagcaggaggctgatgaaggagcttgaagaaatccgcaaatgtgggatgaaa
aacttctgtaacatccaggttgatgaagctaatttattgacttggcaagggcttattgtt
cctgacaaccctccatatgataagggggccttcagaatagaaatcaactttccagcagag
tacccattcaaaccaccgaagatcacatttaaaacaaagatctatcacccaaacatcgac
gaaaaggggcaggtctgtctgccagtaattagtgctgaaaactggaagccagcaaccaaa
accgaccaagtaatccagtccctcatagcactggtgaatgacccccagcccaagcacccg
cttcgggctgacctagctgaagaatactctaaggaccgtaaaaaattctgtaagaatgct
gaagagtttacaaagaaatatggggaaaagcgacctgtggactaa

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_4|227_aa
MNTLVSYDPVPEPKIVDAALRACRRLNDFASAVGILEAVKDKAGPHKEIYPYVIQELRPT
LNELGISTPEDLGLDKSETLSRKKRKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEL
FQKKKRKKKKRKKKHYSKRRRRRGRRSTIPEEEEEQEEEEEEEEEEEEEALFQKKKKKRK
KKKKKHYSRRRRRKKKKKKKKKKKKNYSKRETLSLSSQRSQTDSFIV

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_4|684_bp
atgaacacacttgttagctatgatccggttccagagcccaaaattgttgatgctgctttg
cgggcatgcagacggttaaacgattttgctagtgcagttggcatcctagaggctgttaag
gacaaagcaggacctcataaggaaatctacccctatgtcatacaggaactcagaccaact
ttaaatgaactgggaatctccactccggaggatctgggccttgacaagagcgagactctg
tctcgaaaaaagagaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaggaagaggaagaggaagaggaagaggaagaggaagaagaagaagaagaggaagaacta
ttccaaaagaagaagaggaagaagaagaagaggaagaagaagcactattccaaaagaaga
agaagaagaggaagaagaagcactattccagaagaagaagaagagcaagaagaagaagag
gaagaagaagaagaggaggaagaagaagcactattccaaaagaagaagaagaagaggaag
aagaagaagaagaagcactattccagaagaagaagaagaaagaagaagaagaagaagaag
aagaagaagaagaagaactattccaaaagagaaacattaagtttaagtagtcaaagaagt
caaacagattcctttattgtgtaa

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_5|150_aa
MHTFICLEKNPYIPNGIFGRGPRGSLGNPLDDQIPREKGTFNCTVMEIQGSASCMNHMLP
LLGQDPRERLPSSGGQLHLNVNLLQEQVRPCLGVLHTNRHLGSSFGLPSYMTREPLVPVD
SSLILLSGLRCYRGDRRAPGRTMLPFHPLL

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_5|453_bp
atgcatacattcatatgtctggaaaagaatccttatattccaaatgggatatttggcaga
ggcccaagaggttcactagggaatcctctggatgaccagatccccagggaaaaaggaaca
ttcaactgtactgtcatggagatccagggctcagcatcttgtatgaatcatatgctgccc
ttgttgggtcaggatcccagagaaaggctcccttcatcaggaggccaactccatctcaac
gtgaatcttctacaggagcaagtgagaccttgtcttggtgttcttcacactaacagacac
ttgggatcttcttttggcttaccttcctacatgacccgggagccgctggttccagttgat
tcttctctcatcctcctgtcagggttgagatgttatagaggggacagaagagcaccagga
cgtactatgttgcctttccatcccttgctgtaa

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_6|151_aa
MVKIHKTKQDNCSKNQVTSQDPSSDVTDTRTHSPMTSSWTEDEPQSTCASPEAGEASEPP
SRLVVEEGAAHKINELVFPKNNDSWVIQTSLMAFRSLIGLDGIQKFDRPRDLTFHVATFL
METLNHVQRQNPDLGYPICASGEVGPEPSCE

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_6|456_bp
atggtaaagattcacaaaacaaaacaagacaactgcagtaagaaccaagtgacatcccag
gacccatcttctgacgtcacagacacacggacccacagccctatgacttcatcgtggact
gaggacgaaccgcagtcgacttgcgccagcccagaggctggggaggcgtccgagcctccg
tcccgcctcgtcgttgaagaaggggctgcccacaagattaatgaacttgtttttccaaag
aacaatgattcttgggtcattcagacctccttgatggcattcagaagtttgatcggcctt
gatggcattcagaagtttgatcggcctagggatctcaccttccacgtagctacctttctc
atggaaacactcaatcatgttcaaaggcagaatcctgatctgggctaccctatctgtgct
tctggtgaggtgggcccagaaccatcgtgtgaataa

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_7|279_aa
MHLHHVGNKHFFCCVNNVIFIVVCLCFDCDLSHEVGCGIFHLWHRVGAQKVLDFGPFRIS
DFWIRNSQPVLSARRLARRALFGAGGGKAGKGGLTLQEAIQRLRDTEEMLSKKQEFLEKK
IEQRHGTKNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSA
AKAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELE
QEEPDKNLLEVSGPETVPLPNVPSIALPSKPAKKRKTTT

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_7|840_bp
atgcatttgcatcatgtcggcaataagcactttttttgctgtgttaacaatgtcatcttc
attgttgtgtgcctgtgttttgactgtgacctgtcacatgaggttgggtgtggaattttc
cacttgtggcatcgtgttggagctcaaaaagttttggattttggaccatttcggatttcg
gatttttggattaggaattctcaacctgtgctatcagccaggaggctggcgcggcgagcg
ctgttcggggctggagggggtaaggccggcaagggcggcctgaccctccaggaggccatc
cagcggctgcgggacacggaggagatgttaagcaagaaacaggagttcctggagaagaaa
atcgagcagaggcacggcaccaaaaacaagcccgcggccctccaggcactgaagcgtaag
aagaggtatgagaagcagctggcgcagatcgacggtacattatcaaccatcgagttccag
cagcaggccctggagaatgccaacaccaataccgaggtgctcaagaacatgggctctgca
gccaaggccaagaaggcggcccacgacaacatggacatcgataaagttgatgagttaatg
caggacattgctgaccagcaagaacttggggaggagatttcaacagcaatttcgaaacct
gtagggtttggagaaaagtctgacgaggatgagctcatggcggaattagaagaactagaa
caggaggaaccagacaagaatttgctggaagtcagtggccccgaaacagtccctctacca
aatgttccctctatagccctaccatcaaaacctgccaagaagaggaagacgacgacatga

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_8|59_aa
MCLHICHCNFKRTSLNSFRGGKQNNVREEGVWRCVDGGDVSTAMSQVSRTMGYDCVTFL

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_8|180_bp
atgtgtttgcatatttgtcactgcaactttaagcggacctctttgaattcttttcgtgga
ggcaagcaaaacaatgtgcgggaagaaggagtgtggcggtgtgtggatgggggagatgtc
tctacagcaatgtctcaggtttccagaacgatgggctatgattgtgtcaccttcctctag

>gi568815584f:55129217_55329678|GENSCAN_predicted_peptide_9|120_aa
MWKQFWNWVTGKGCNNLEDSEEDMKMWESLELPRNLLNGSDQNADSDMVNEVQDEVVSDE
EEDLLRTGIKSQDLVPRIPTGVKMEQRTAQAITSEGASPKPWQLTHGVGPAGARKSRIEV

>gi568815584f:55129217_55329678|GENSCAN_predicted_CDS_9|363_bp
atgtggaagcaattttggaactgggtaacaggcaaaggttgcaacaatttggaggactca
gaagaagacatgaagatgtgggaaagtttggaacttcctagaaacttgctgaatggctct
gaccaaaatgctgatagtgatatggtcaatgaagtccaggatgaggtggtctcagatgaa
gaggaggacttattgagaactggaataaagtctcaagacttggtgccccgcatccccact
ggggtgaaaatggagcaacgtacagctcaggccattacttcagagggtgcaagccccaag
ccttggcagcttacacatggtgttgggcctgcaggtgcacgaaagtcaagaattgaggtt
tga