GENSCAN 1.0	Date run:  4-Nov-116	Time: 23:16:19

Sequence gi568815584f:52607220_52827614 : 220395 bp : 38.36% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2396   2507  112  2  1   84   81    80 0.061   6.36
 1.02 Intr +  24941  25090  150  1  0   68   94    43 0.409   2.34
 1.03 Intr +  26609  26727  119  1  2   76   71   116 0.783   7.04
 1.04 Term +  27719  27896  178  2  1   80   48    60 0.687  -2.62
 1.05 PlyA +  28327  28332    6                               1.05

 2.13 PlyA -  29650  29645    6                               1.05
 2.12 Term -  31060  31024   37  0  1   93   37    44 0.130  -4.37
 2.11 Intr -  39068  38935  134  2  2  109   96    79 0.686   9.32
 2.10 Intr -  45089  45020   70  1  1   84   86    21 0.496  -0.23
 2.09 Intr -  46096  45850  247  2  1   91   38   126 0.494   3.50
 2.08 Intr -  56628  56582   47  2  2   96   94    16 0.859   0.13
 2.07 Intr -  59276  59156  121  0  1   46   44   149 0.902   4.93
 2.06 Intr -  64484  64411   74  1  2   75   30    94 0.922   0.43
 2.05 Intr -  64652  64576   77  2  2   67   20   195 0.943   7.99
 2.04 Intr -  71253  71215   39  0  0  127   93    40 0.979   5.90
 2.03 Intr -  75189  75106   84  0  0  112   47    54 0.766   2.80
 2.02 Intr -  76688  76569  120  2  0  103   63    64 0.842   5.17
 2.01 Init -  88262  88149  114  2  0   77   99   253 0.292  23.56
 2.00 Prom -  94039  94000   40                              -6.35

 3.00 Prom +  97046  97085   40                              -2.15
 3.01 Init +  99959 100085  127  1  1  102   65   214 0.990  20.87
 3.02 Intr + 101090 101169   80  0  2   45   96   111 0.949   5.95
 3.03 Intr + 101264 101303   40  1  1   93   82    37 0.867   0.48
 3.04 Intr + 101545 101597   53  2  2   79   90    78 0.813   4.81
 3.05 Intr + 106662 106749   88  2  1   82   77    35 0.661   0.42
 3.06 Intr + 110862 110923   62  1  2  102   98    16 0.776   1.53
 3.07 Intr + 111010 111133  124  0  1   79   91    73 0.936   5.94
 3.08 Intr + 113891 113971   81  0  0   69   82    50 0.687   1.19
 3.09 Intr + 116746 116817   72  2  0   88  110   100 0.999  10.66
 3.10 Term + 120280 120398  119  2  2   94   28   144 0.980   6.72
 3.11 PlyA + 120450 120455    6                               1.05

 4.00 Prom + 120680 120719   40                              -6.25
 4.01 Init + 123256 123404  149  0  2  107   29   211 0.764  16.71
 4.02 Intr + 150655 150705   51  1  0  101  110    10 0.357   1.60
 4.03 Intr + 152463 152535   73  0  1  117   93    12 0.457   3.09
 4.04 Intr + 161621 161714   94  1  1  111  110    28 0.443   5.92
 4.05 Term + 163814 163887   74  0  2   36   38   101 0.205  -3.01
 4.06 PlyA + 164775 164780    6                               1.05

 5.08 PlyA - 166456 166451    6                               1.05
 5.07 Term - 171239 171092  148  1  1  110   42    49 0.548  -1.11
 5.06 Intr - 173521 173460   62  1  2   54   87    83 0.460   1.41
 5.05 Intr - 174692 174565  128  0  2   83   95   145 0.997  14.18
 5.04 Intr - 177445 177278  168  2  0   73   80   103 0.679   7.00
 5.03 Intr - 187032 186877  156  1  0   81   37    71 0.002   0.36
 5.02 Intr - 194375 194278   98  1  2   46   78    69 0.047   0.43
 5.01 Intr - 212817 212767   51  2  0  104   80    60 0.026   3.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 183703 184006  304  0  1   40   39   171 0.870   4.91


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584f:52607220_52827614|GENSCAN_predicted_peptide_1|186_aa
XCLSTGGRSKPRLAPCLVRARKLMPISGPDGSGEDTRKGMSLCQTVVVGSVVILLYSSRA
CYNLVVVTISQDTLESPFNYGWDNLSDKAPAGMINSHSYSSRAYFFDNPRRYDSDDDLPR
LGSSREGSLPNSQSLGWYGTMTGCGSSSYTVTPHLNGPMTDTAPLLFTCSNLDLNNHHSL
YVTPQN

>gi568815584f:52607220_52827614|GENSCAN_predicted_CDS_1|561_bp
nnttgtctcagcactggaggacgctctaagcctaggcttgctccatgtcttgtgagggct
cggaagttgatgccaatttctggcccagatggatctggggaagacacaaggaagggtatg
tctctgtgccagactgtcgtcgtgggctctgtagtcattcttctgtactcttccagagct
tgttataatttggtggtggtcaccatatctcaggatacattagaaagtccatttaattat
ggctgggataatctttcagataaggcacctgctggcatgataaatagtcacagttatagt
tccagagcttactttttcgacaatccaagacgatatgatagtgatgatgacctgccaaga
ctgggaagttcaagagaaggaagtttaccaaattcgcaaagtttgggctggtatggcacc
atgactgggtgtggcagcagcagttacacagtcactccccacctgaatggacctatgaca
gatactgctcctttgctctttacttgtagtaatttagatttgaacaatcatcatagctta
tatgtgacaccacaaaactga

>gi568815584f:52607220_52827614|GENSCAN_predicted_peptide_2|387_aa
MGRGWGFLFGLLGAVWLLSSGHGEEQPPETAAQRCFCQVSGYLDDCTCDVETIDRFNNYR
LFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDCAVKPCQSDEVPDGIKSASYKY
SEEANNLIEECEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFCEADDIQSPEAEYVD
LLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLNPLASGQETWLEKKWGHNITEF
QQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEENKMLL
LEILHEIKSFPLHFDENSFFAGDKKEAHKLKTQGLGTALKILFSEKLIANMPESGPSYEF
HLTRQEIVSLFNAFGRDMDEIGNNHSQ

>gi568815584f:52607220_52827614|GENSCAN_predicted_CDS_2|1164_bp
atgggccgcggctggggattcttgtttggcctcctgggcgccgtgtggctgctcagctcg
ggccacggagaggagcagcccccggagacagcggcacagaggtgcttctgccaggttagt
ggttacttggatgattgtacctgtgatgttgaaaccattgatagatttaataactacagg
cttttcccaagactacaaaaacttcttgaaagtgactactttaggtattacaaggtaaac
ctgaagaggccgtgtcctttctggaatgacatcagccagtgtggaagaagggactgtgct
gtcaaaccatgtcaatctgatgaagttcctgatggaattaaatctgcgagctacaagtat
tctgaagaagccaataatctcattgaagaatgtgaacaagctgaacgacttggagcagtg
gatgaatctctgagtgaggaaacacagaaggctgttcttcagtggaccaagcatgatgat
tcttcagataacttctgtgaagctgatgacattcagtcccctgaagctgaatatgtagat
ttgcttcttaatcctgagcgctacactggttacaagggaccagatgcttggaaaatatgg
aatgtcatctacgaagaaaactgttttaagccacagacaattaaaagacctttaaatcct
ttggcttctggtcaagagacctggttagaaaagaaatggggacacaacattacagaattt
caacagcgatttgatggaattttgactgaaggagaaggtccaagaaggcttaagaacttg
tattttctctacttaatagaactaagggctttatccaaagtgttaccattcttcgagcgc
ccagattttcaactctttactggaaataaaattcaggatgaggaaaacaaaatgttactt
ctggaaatacttcatgaaatcaagtcatttcctttgcattttgatgagaattcatttttt
gctggggataaaaaagaagcacacaaactaaagactcagggtttgggcactgctctgaag
atcttattttctgagaaattgatagcaaatatgccagaaagtggacctagttatgaattc
catctaaccagacaagaaatagtatcattattcaacgcatttggaagggacatggatgaa
attggaaataatcattctcagtaa

>gi568815584f:52607220_52827614|GENSCAN_predicted_peptide_3|281_aa
MAIPGIPYERRLLIMADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSEND
LKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQVIELPLTNPELFQRVGIIPP
KGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQP
CIIFMDEIDAIDIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCT
EAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV

>gi568815584f:52607220_52827614|GENSCAN_predicted_CDS_3|846_bp
atggccattcccggcatcccctatgagagacggcttctcatcatggcggaccctagagat
aaggcgcttcaggactaccgcaagaagttgcttgaacacaaggagatcgacggccgtctt
aaggagttaagggaacaattaaaagaacttaccaagcagtatgaaaagtctgaaaatgat
ctgaaggccctacagagtgttgggcagatcgtgggtgaagtgcttaaacagttaactgaa
gaaaaattcattgttaaagctaccaatggaccaagatatgttgtgggttgtcgtcgacag
gtgatagaattacctcttacaaacccagagttatttcagcgtgtaggaataatacctcca
aaaggctgtttgttatatggaccaccaggtacgggaaaaacactcttggcacgagccgtt
gctagccagctggactgcaatttcttaaaggttgtatctagttctattgtagacaagtac
attggtgaaagtgctcgtttgatcagagaaatgtttaattatgctagagatcatcaacca
tgcatcatttttatggatgaaatagatgctattgatattgatttgccaaatgaacaagca
agattagacatactgaaaatccatgcaggtcccattacaaagcatggtgaaatagattat
gaagcaattgtgaagctttcggatggctttaatggagcagatctgagaaatgtttgtact
gaagcaggtatgttcgcaattcgtgctgatcatgattttgtagtacaggaagacttcatg
aaagcagtcagaaaagtggctgattctaagaagctggagtctaaattggactacaaacct
gtgtaa

>gi568815584f:52607220_52827614|GENSCAN_predicted_peptide_4|146_aa
MEDVKLEFPSLPQCKEDAEVSRSRGCHAQASPCGSGRGATPVPNRLSRHLAAFVIAYIME
TFGMKYRDAFAYVQERRFCINPNAGFVHQLQEYEAIYLAKLTIQMMSPLQIERSLSVHSG
TTGSLKRTHEEEDDFGTMQVATAQNG

>gi568815584f:52607220_52827614|GENSCAN_predicted_CDS_4|441_bp
atggaggacgtgaagctggagttcccttcccttccacagtgcaaggaagacgccgaggtg
agtcgctcccgtggctgccacgcacaggcctctccctgtggctccggccgaggggcgacc
ccagtccccaaccgtcttagccgccaccttgcagcctttgttattgcatacattatggaa
acatttggaatgaagtacagagatgcttttgcttatgttcaagaaagaagattttgtatt
aatcctaatgctggatttgtccatcaacttcaggaatatgaagccatctacctagcaaaa
ttaacaatacagatgatgtcaccactccagatagaaaggtcattatctgttcattctggt
accacaggcagtttgaagagaacacatgaagaagaggatgattttggaaccatgcaagtg
gcgactgcacagaatggctga

>gi568815584f:52607220_52827614|GENSCAN_predicted_peptide_5|270_aa
XSQDFENPDSNKEIDMASCVTNTDKFVCDKSSSLLLEQLVTTSLQCRVVLMLGLQVLTMV
PGQGILKLLIQANVPESLLNSITDIYVYPRNSLICANENIVVDLTRKMKPDETPMFDPSL
LKEVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNRESFEHMKKSGDYYVTVVEDVTL
GQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTLLSKKLNCYKIT
LECLPQNVGFYKKFGYTVSEENYMCRRFLK

>gi568815584f:52607220_52827614|GENSCAN_predicted_CDS_5|813_bp
nngtcacaagattttgagaacccagattcaaataaagaaatagatatggccagttgtgtg
actaacactgacaaatttgtctgtgacaagagttcttccttactacttgagcagcttgtc
accacttcccttcagtgcagggtggttctaatgctgggattacaggtgttaaccatggta
cccggccaaggtattcttaaacttctcattcaggccaacgttcctgaatcacttctcaac
tcaatcactgacatctatgtttatccacgtaatagccttatttgtgccaatgagaatatt
gttgttgaccttactagaaaaatgaaacctgatgaaactcctatgtttgacccaagtcta
ctcaaagaagtggactggagtcagaatacagctacattttctccagccatttccccaaca
catcctggagaaggcttggttttgaggcctctttgtactgctgacttaaatagagaatct
tttgagcatatgaagaaatctggggattattatgttacagttgtagaagatgtgactcta
ggacagattgttgctacggcaactctgattatagaacataaattcatccattcctgtgct
aagagaggaagagtagaagatgttgttgttagtgatgaatgcagaggaaagcagcttggc
aaattgttattatcaacccttactttgctaagcaagaaactgaactgttacaagattacc
cttgaatgtctaccacaaaatgttggtttctataaaaagtttggatatactgtatctgaa
gaaaactacatgtgtcggaggtttctaaagtaa