GENSCAN 1.0	Date run:  5-Nov-116	Time: 19:56:12

Sequence gi568815584f:51850679_52066684 : 216006 bp : 40.55% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   5105   5016   90  0  0  109   94    65 0.294   8.25
 1.01 Init -  30824  30746   79  2  1   60   98    69 0.862   6.37
 1.00 Prom -  33659  33620   40                              -7.25

 2.05 PlyA -  33771  33766    6                               1.05
 2.04 Term -  34315  34184  132  1  0  109   46    90 0.495   4.01
 2.03 Intr -  53697  53642   56  1  2  129   86     2 0.052   1.88
 2.02 Intr -  66393  66299   95  2  2   92   68    76 0.349   4.69
 2.01 Init -  66714  66656   59  0  2   85   89    20 0.593   2.69
 2.00 Prom -  83143  83104   40                              -3.35

 3.00 Prom +  85791  85830   40                              -4.35
 3.01 Init +  88834  88924   91  0  1   69  111     0 0.265   1.10
 3.02 Intr +  92387  92464   78  0  0   73   94    64 0.318   4.10
 3.03 Intr +  99972 100087  116  1  2  106  100   101 0.376  12.35
 3.04 Term + 100659 100664    6  2  0  113   37     0 0.157  -5.71
 3.05 PlyA + 101024 101029    6                               1.05

 4.06 PlyA - 101086 101081    6                               1.05
 4.05 Term - 101723 101532  192  2  0   99   39   172 0.396   9.84
 4.04 Intr - 113935 113868   68  2  2   80   42    96 0.108   1.91
 4.03 Intr - 115912 115676  237  2  0   47   10   213 0.029   6.06
 4.02 Intr - 119318 119294   25  2  1  112   57    10 0.028  -3.02
 4.01 Init - 121813 121655  159  1  0   72   77   132 0.073  10.38
 4.00 Prom - 124391 124352   40                              -3.55

 5.03 PlyA - 127325 127320    6                               1.05
 5.02 Term - 128659 128373  287  2  2   22   40   170 0.187   0.18
 5.01 Init - 132741 132591  151  0  1   77   75   122 0.535  10.05
 5.00 Prom - 135532 135493   40                              -8.35

 6.00 Prom + 136243 136282   40                              -5.85
 6.01 Init + 138308 138347   40  1  1   70   72    72 0.735   4.20
 6.02 Intr + 138768 139022  255  1  0   73  100    96 0.720   5.79
 6.03 Intr + 140639 140763  125  0  2   79   90   136 0.995  12.28
 6.04 Intr + 143045 143144  100  1  1   87   88   107 0.992   9.36
 6.05 Intr + 147816 147902   87  1  0   70  101   116 0.997  10.12
 6.06 Intr + 149030 149118   89  0  2   64   82   115 0.950   7.27
 6.07 Intr + 151120 151188   69  0  0   49   94    79 0.892   3.06
 6.08 Intr + 153516 153564   49  2  1  108  107    43 0.999   5.53
 6.09 Term + 153684 153838  155  1  2   48   47   155 0.880   4.50
 6.10 PlyA + 153997 154002    6                               1.05

 7.22 PlyA - 154026 154021    6                               1.05
 7.21 Term - 154818 154808   11  1  2  112   42     0 0.898  -4.82
 7.20 Intr - 155171 155059  113  1  2  115   98    71 0.952   9.90
 7.19 Intr - 155982 155859  124  1  1   77   83    76 0.988   4.72
 7.18 Intr - 157289 157132  158  1  2   53   90   108 0.999   6.23
 7.17 Intr - 160369 160198  172  2  1  105   44   284 0.999  23.78
 7.16 Intr - 161005 160876  130  1  1   18   76   216 0.947  12.75
 7.15 Intr - 163778 163591  188  0  2  150   17   177 0.768  15.29
 7.14 Intr - 164597 164376  222  0  0   55   60   274 0.899  18.48
 7.13 Intr - 165528 165418  111  1  0   46   38   106 0.598   0.83
 7.12 Intr - 168616 168383  234  2  0   11   99   214 0.929  11.54
 7.11 Intr - 169500 169381  120  1  0   97  119    67 0.327  10.25
 7.10 Intr - 176666 176523  144  0  0  116  105   151 0.985  18.93
 7.09 Intr - 178172 178044  129  0  0   79   65   150 0.974  11.55
 7.08 Intr - 179012 178869  144  0  0   75   86    49 0.767   2.73
 7.07 Intr - 182970 182842  129  1  0    9   81    91 0.476   0.25
 7.06 Intr - 188299 188069  231  2  0   77  116   180 0.963  16.52
 7.05 Intr - 190173 189973  201  1  0  110   47   154 0.991  11.84
 7.04 Intr - 191672 191427  246  0  0   83  109   368 0.991  34.91
 7.03 Intr - 192253 192104  150  2  0   59   86   119 0.807   8.01
 7.02 Intr - 203643 202901  743  2  2   72   96   741 0.857  63.46
 7.01 Intr - 209678 209446  233  2  2  136   89   143 0.917  14.85

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  10189   9970  220  1  1   66   62   156 0.921   7.75
S.002 Init -  85115  85037   79  2  1   85   48    79 0.977   4.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_1|57_aa
MLAEYCRSSGERPSKRLYPDVATLHGERSHQLCQQSQPLSACVGCREEGRVKWEQKX

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_1|171_bp
atgctggcagagtactgcagaagtagtggggaaaggcccagcaagcgtctttacccagat
gtagcaactttacatggggaaaggagccatcagctgtgccagcaaagccagcccttgagt
gcatgtgtgggctgcagggaagaaggaagagtaaaatgggaacaaaaagnn

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_2|113_aa
MSLLSDKWDAIFLCFTLGAHHSHAFTRLCPPVPKPALNMPGSVDKIRSPSMGSEAEAKIH
FPGSLAATVQTETQLSMILTALGPERMRPLLSTRVGKFQRKNLLAPADGRPTL

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_2|342_bp
atgtcgttgctgtctgacaaatgggatgcgattttcttgtgctttacacttggggctcac
cacagtcatgctttcaccaggctctgcccaccagtgcccaagccagccctgaacatgcct
ggcagtgtagataaaatcagatctccatcaatgggttctgaggcagaggctaaaattcat
ttcccaggctcccttgcagctacggtacagactgaaacacagctttccatgattcttact
gccttgggaccagaaaggatgagacctctcctctcaactcgagttggaaaattccagagg
aagaacctactggcccctgctgatggcaggcccaccctctga

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_3|96_aa
MLRLTLHPHSIDGSHADLREEIRCFVSLPLEKVKSTAGHASGVVLWQPQSQCGPYKVFLK
DLSSTPMASNNTASIAQARKLVEQLKMEANIDRIKT

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_3|291_bp
atgttgcgtcttactctccacccacacagcatagacggctcccatgctgatttgagggaa
gaaatacgttgttttgtctctctcccacttgaaaaagtgaagtctactgctgggcatgcc
tctggggtggtcctctggcagccccaaagccagtgtgggccctacaaagtgtttctgaaa
gatctatccagcactccgatggccagcaacaacaccgccagcatagcacaagccaggaag
ctggtagagcagcttaagatggaagccaatatcgacaggataaagacctaa

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_4|226_aa
MNWKRGFGWQDGISQVGPLKGLESQVVEIGHDVVDKEHHEPENLGFLNMVKDEAVPKMYR
PIGHQICSCLGHLERETKTTNTGVWYSQSRPKALEPNVLASNPCSMKQDTQPLKASASSS
AKKKVDDTDLTGLLPASLGLEQIEATFWTEAAPSASIPDEGDMQESEKEEARKEEKRKMA
KEHGKVALVISVMKKEEELRLLKEEQELIKSCGPLLGIKFYKGDLG

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_4|681_bp
atgaactggaaaagagggtttggatggcaagatgggattagccaagtggggcctctcaag
ggccttgagagccaggtagttgagattggacatgatgtggttgacaaagagcaccatgaa
ccagagaaccttgggtttctgaacatggtgaaagatgaggctgtacccaagatgtacaga
cctataggccatcaaatctgcagctgccttggacacctggaaagggagacaaaaacaacc
aacactggagtctggtacagtcagtcaaggcccaaggctttagagcccaatgtcctggca
tcaaatccttgctccatgaagcaagatactcagcctctaaaagcttctgcttcctcatct
gcaaagaagaaagttgacgacactgaccttacaggattgttgccagcaagtctgggacta
gaacagatagaagcaacattctggacagaggctgctccatctgccagcatccctgatgaa
ggtgacatgcaagagagtgaaaaagaagaagcaagaaaagaggagaagaggaagatggca
aaggagcacggtaaggtcgctttagtgatctcagtcatgaagaaagaagaagaattaagg
ctgttgaaagaagagcaggagctgattaaatcctgtggtccattactaggcatcaaattt
tacaaaggagatttaggataa

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_5|145_aa
MEEVTSKPAIKYELLPDFPMGKGQSMNKSMSTKAPCQQGFASVKLKEDQGEHLQTKDAMM
WRLLRTDQQRALLRKKNDVQDCSGQGWQIPHRRHHLAVIIVKNGKGKWISTEHEPEQPWS
DSGANCGKPSGEPSQSGIQARISSL

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_5|438_bp
atggaggaggttacatctaagccagctatcaaatatgagctattaccggatttcccaatg
gggaaagggcagagcatgaacaaaagcatgagcacaaaggccccttgtcagcaagggttt
gcttctgtgaaactgaaggaagatcagggagagcatctgcagacgaaagacgcgatgatg
tggcgccttctgagaactgaccagcagagggcgctcttgagaaagaagaacgatgtgcaa
gattgttccggtcagggatggcaaattccacacaggaggcaccacttagctgtaattatt
gtaaagaatggtaaaggcaagtggatttccacagaacatgaaccagaacagccatggagt
gatagcggtgccaattgcgggaaacctagcggagaaccttcccaaagtggtattcaggct
aggatttcaagcctctag

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_6|322_aa
MAGIGDLLDAVTEAGAAIGGHLPAATAFKPRLAKAAVISERLSACPPSRRVAGACASRST
SLLLSRPRPGGPEREAGTMFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKI
EDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDL
VPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQE
RLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEA
IVAVQAIIADPKTDHRLGKVGR

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_6|969_bp
atggcaggaattggtgacctactggatgctgtgaccgaggccggagccgcgattggtggg
catttgccggcggccaccgcttttaagccacgattggcgaaggccgccgtcatttcggag
cgactcagcgcctgcccgccctctcgccgcgtcgccggtgcctgcgcctcccgctccacc
tcgcttcttctctcccggccgaggcccgggggaccagagcgagaagcggggaccatgttc
cgacgcaagttgacggctctcgactaccacaaccccgccggcttcaactgcaaagatgaa
acagaatttagaaacttcatcgtttggcttgaagaccagaaaatcaggcactacaagatt
gaagacagagggaatttaagaaacatccacagcagcgactggcccaagttctttgaaaag
tatctcagagatgttaactgtcctttcaagattcaagatcgacaagaagctattgactgg
cttcttggtttagctgttagacttgaatatggagataatgctgaaaaatacaaggattta
gtacctgataattcaaaaactgctgacaatgcaactaaaaatgcagaaccattgatcaat
ttggatgtaaataatcctgattttaaggctggtgtgatggctttggctaacctgcttcag
attcagcgtcatgatgattacctggtaatgcttaaggcaattcggattttggttcaggag
cgcctgacacaggatgcagttgctaaggcaaatcaaacaaaagagggcttacctgttgct
ttagacaaacatattcttggttttgacacaggagatgcagttcttaatgaagctgctcaa
attctgcgattgctgcacatagaggagctcagagagctacagacaaaaatcaacgaagcc
atagtagctgttcaggcaattattgctgatccaaagacagaccacagactgggaaaagtt
ggaagatga

>gi568815584f:51850679_52066684|GENSCAN_predicted_peptide_7|1310_aa
LNTFQAVLASDGSDSYALFLYPANGLQFLGTRPKESYNVQLQLPARVGFCRGEADDLKSE
GPYFSLTSTEQSVKNLYQLSNLGIPGVWAFHIGSTSPLDNVRPAAVGDLSAAHSSVPLGR
SFSHATALESDYNEDNLDYYDVNEEEAEYLPGEPEEALNGHSSIDVSFQSKVDTKPLEGR
ISPPDSDLSSPLHPTPTYWPFYPETESSTLDPHTKEGTSLGEVGGPDLKGQVEPWDERET
RSPAPPEVDRDSLAPSWETPPPYPENGSIQPYPDGGPVPSEMDVPPAHPEEEIVLRSYPA
SGHTTPLSRGTYEVGLEDNIGSNTEVFTYNAANKETCEHNHRQCSRHAFCTDYATGFCCH
CQSKFYGNGKHCLPEGAPHRVNGKVSGHLHVGHTPVHFTDVDLHAYIVGNDGRAYTAISH
IPQPAAQALLPLTPIGGLFGWLFALEKPGSENGFSLAGAAFTHDMEVTFYPGEETVRITQ
TAEGLDPENYLSIKTNIQGQVPYVSANFTAHISPYKELYHYSDSTVTSTSSRDYSLTFGA
INQTWSYRIHQNITYQVCRHAPRHPSFPTTQQLNVDRVFALYNDEERVLRFAVTNQIGPV
KELLSFSRGNDSCWNSCETAQLSTPDVGVVRLPRARMQNWGVFPKDSDPTPGNPCYDGSH
MCDTTARCHPGTGVDYTCECASGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCE
CRSGYEFADDRHTCILITPPANPCEDGSHTCAPAGQARCVHHGGSTFSCACLPGYAGDGH
QCTDVDECSENRCHPAATCYNTPGSFSCRCQPGYYGDGFQCIPDSTSSLTPCEQQQRHAQ
AQYAYPGARFHIPQCDEQGNFLPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPS
PAESSQNNLYFGQSLNGTVEAAWEETALQPKPAGLQPWKPTQRPPTICERWRENLLEHYG
GTPRDDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDGREVQGTRSQPGTTPACIPTVAPP
MVRPTPRPDVTPPSVGTFLLYTQGQQIGYLPLNGTRLQKDAAKTLLSLHVKWISPGSIIV
GIDYDCRERMVYWTDVAGRTISRAGLELGAEPETIVNSGLISPEGLAIDHIRRTMYWTDS
VLDKIESALLDGSERKVLFYTDLVNPRAIAVDPIRGNLYWTDWNREAPKIETSSLDGENR
RILINTDIGLPNGLTFDPFSKLLCWADAGTKKLECTLPDGTGRRVIQNNLKYPFSIVSYA
DHFYHTDWRRDGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGRK

>gi568815584f:51850679_52066684|GENSCAN_predicted_CDS_7|3933_bp
ctgaacactttccaggcagttttggcatctgatgggtctgatagctacgccctctttctt
tatcctgccaacggcctgcagttccttggaacccgccccaaagagtcttacaatgtccag
cttcagcttccagctcgggtgggcttctgccgaggggaggctgatgatctgaagtcagaa
ggaccatatttcagcttgactagcactgaacagtctgtgaaaaatctctatcaactaagc
aacctggggatccctggagtgtgggctttccatatcggcagcacttccccgttggacaat
gtcaggccagctgcagttggagacctttccgctgcccactcttctgttcccctgggacgt
tccttcagccatgctacagccctggaaagtgactataatgaggacaatttggattactat
gatgtgaatgaggaggaagctgaataccttccgggtgaaccagaggaggcattgaatggc
cacagcagcattgatgtttccttccaatccaaagtggatacaaagcctttagagggtagg
atctcccctccagattctgatctgtcctcccccttgcatccaacacctacttattggcca
ttctatcctgaaacagaatcttccaccttggatcctcacaccaaagaaggaacatctctg
ggagaggtagggggcccagatttaaaaggccaagttgagccctgggatgagagagagacc
agaagcccagctccaccagaggtagacagagattcactggctccttcctgggaaacccca
ccaccgtaccccgaaaacggaagcatccagccctacccagatggagggccagtgccttcg
gaaatggatgttcccccagctcatcctgaagaagaaattgttcttcgaagttaccctgct
tcaggtcacactacacccttaagtcgagggacgtatgaggtgggactggaagacaacata
ggttccaacaccgaggtcttcacgtataatgctgccaacaaggaaacctgtgaacacaac
cacagacaatgctcccggcatgccttctgcacggactatgccactggcttctgctgccac
tgccaatccaagttttatggaaatgggaagcactgtctgcctgaaggggcacctcaccga
gtgaatgggaaagtgagtggccacctccacgtgggccatacacccgtgcacttcactgat
gtggacctgcatgcgtatatcgtgggcaatgatggcagagcctacacggccatcagccac
atcccacagccagcagcccaggccctcctccccctcacaccaattggaggcctgtttggc
tggctctttgctttagaaaaacctggctctgagaacggcttcagcctcgcaggtgctgcc
tttacccatgacatggaagttacattctacccgggagaggagacggttcgtatcactcaa
actgctgagggacttgacccagagaactacctgagcattaagaccaacattcaaggccag
gtgccttacgtctcagcaaatttcacagcccacatctctccctacaaggagctgtaccac
tactccgactccactgtgacctctacaagttccagagactactctctgacttttggtgca
atcaaccaaacatggtcctaccgcatccaccagaacatcacttaccaggtgtgcaggcac
gcccccagacacccgtccttccccaccacccagcagctgaacgtggaccgggtctttgcc
ttgtataatgacgaagaaagagtgcttagatttgctgtgaccaatcaaattggcccggtc
aaagaactgctcagtttttccagagggaacgatagttgttggaattcatgtgaaacagcg
cagctgtccacacctgatgtgggtgtggtgcgacttcccagggcgaggatgcagaactgg
ggtgtctttcccaaggattcagaccccactccggggaatccttgctatgatgggagccac
atgtgtgacacaacagcacggtgccatccagggacaggtgtagattacacctgtgagtgc
gcatctgggtaccagggagatggacggaactgtgtggatgaaaatgaatgtgcaactggc
tttcatcgctgtggccccaactctgtatgtatcaacttgcctggaagctacaggtgtgag
tgccggagtggttatgagtttgcagatgaccggcatacttgcatcttgatcaccccacct
gccaacccctgtgaggatggcagtcatacctgtgctcctgctgggcaggcccggtgtgtt
caccatggaggcagcacgttcagctgtgcctgcctgcctggttatgccggcgatgggcac
cagtgcactgatgtagatgaatgctcagaaaacagatgtcaccctgcagctacctgctac
aatactcctggttccttctcctgccgttgtcaacccggatattatggggatggatttcag
tgcatacctgactccacctcaagcctgacaccctgtgaacaacagcagcgccatgcccag
gcccagtatgcctaccctggggcccggttccacatcccccaatgcgacgagcagggcaac
ttcctgcccctacagtgtcatggcagcactggtttctgctggtgcgtggaccctgatggt
catgaagttcctggtacccagactccacctggctccaccccgcctcactgtggaccatca
ccagcagagtcttctcagaacaacctgtattttggacaaagcctcaatggcactgtggaa
gcagcctgggaggaaactgctttgcaaccaaagccagcaggacttcaaccatggaagccc
acccagaggcccccgaccatctgtgagcgctggagggaaaacctgctggagcactacggt
ggcaccccccgggatgaccagtacgtgccccagtgcgatgacctgggccacttcatcccc
ctgcagtgccacggaaagagcgacttctgctggtgtgtggacaaagatggcagagaggtg
cagggcacccgctcccagccaggcaccacccctgcgtgtatacccaccgtcgctccaccc
atggtccggcccacgccccggccagatgtgacccctccatctgtgggcaccttcctgctc
tatactcagggccagcagattggctacttacccctcaatggcaccaggcttcagaaggat
gcagctaagaccctgctgtctctgcatgtaaagtggatttctcctggctccataatcgtg
ggaattgattacgactgccgggagaggatggtgtactggacagatgttgctggacggaca
atcagccgtgctggtctggaactgggagcagagcctgagacgatcgtgaattcaggtctg
ataagccctgaaggacttgccatagaccacatccgcagaacaatgtactggacggacagt
gtcctggataagatagagagcgccctgctggatggctctgagcgcaaggtcctcttctac
acagatctggtgaatccccgtgccatcgctgtggatccaatccgaggcaacttgtactgg
acagactggaatagagaagctcctaaaattgaaacgtcatctttagatggagaaaacaga
agaattctgatcaatacagacattggattgcccaatggcttaacctttgaccctttctct
aaactgctctgctgggcagatgcaggaaccaaaaaactggagtgtacactacctgatgga
actggacggcgtgtcattcaaaacaacctcaagtaccccttcagcatcgtaagctatgca
gatcacttctaccacacagactggaggagggatggtgttgtatcagtaaataaacatagt
ggccagtttactgatgagtatctcccagaacaacgatctcacctctacgggataactgca
gtctacccctactgcccaacaggaagaaagtaa