GENSCAN 1.0 Date run: 7-Nov-116 Time: 22:32:37 Sequence gi568815582f:69239830_69441649 : 201820 bp : 44.57% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 5773 5986 214 2 1 87 94 182 0.256 16.47 1.02 Intr + 20221 20431 211 1 1 112 96 91 0.493 11.22 1.03 Intr + 30314 30456 143 1 2 75 111 68 0.778 6.95 1.04 Intr + 44219 44415 197 2 2 95 48 73 0.646 3.06 1.05 Intr + 59761 59945 185 2 2 97 99 233 0.967 24.81 1.06 Intr + 70609 70643 35 0 2 121 78 18 0.352 1.12 1.07 Intr + 71372 71657 286 2 1 72 25 124 0.186 1.84 1.08 Intr + 76179 76290 112 2 1 83 65 283 0.502 25.45 1.09 Intr + 76396 76543 148 2 1 107 84 267 0.983 27.49 1.10 Intr + 78821 78882 62 2 2 96 106 80 0.791 8.98 1.11 Intr + 78994 79113 120 2 0 95 94 121 0.998 13.87 1.12 Intr + 79558 79714 157 2 1 110 106 129 0.993 15.97 1.13 Intr + 80312 80460 149 2 2 104 61 217 0.985 20.48 1.14 Intr + 80859 80940 82 1 1 116 105 50 0.999 8.20 1.15 Intr + 81222 81441 220 0 1 76 113 344 0.994 34.00 1.16 Intr + 82731 82871 141 2 0 71 115 88 0.993 10.35 1.17 Term + 84379 84480 102 0 0 78 42 136 0.992 6.28 1.18 PlyA + 85188 85193 6 1.05 2.03 PlyA - 87106 87101 6 1.05 2.02 Term - 89350 89193 158 2 2 95 42 193 0.934 13.50 2.01 Init - 90741 90168 574 0 1 122 80 936 0.257 89.48 2.00 Prom - 92946 92907 40 -6.36 3.04 PlyA - 93240 93235 6 1.05 3.03 Term - 95519 94644 876 2 0 83 39 952 0.003 82.38 3.02 Intr - 96883 96676 208 0 1 45 68 284 0.995 21.18 3.01 Init - 99723 99347 377 0 2 101 80 810 0.999 75.91 3.00 Prom - 99769 99730 40 -16.89 4.00 Prom + 99787 99826 40 -16.42 4.01 Init + 100001 100056 56 1 2 77 5 71 0.998 -1.54 4.02 Intr + 100177 100263 87 1 0 84 78 160 0.982 13.69 4.03 Intr + 100365 100503 139 0 1 89 76 161 0.994 15.47 4.04 Intr + 101351 101491 141 1 0 55 97 135 0.999 11.65 4.05 Term + 101704 101823 120 0 0 71 41 99 0.995 1.97 4.06 PlyA + 102212 102217 6 1.05 5.12 PlyA - 102903 102898 6 1.05 5.11 Term - 103811 103578 234 2 0 54 43 131 0.891 1.52 5.10 Intr - 108053 107959 95 0 2 14 94 72 0.273 0.08 5.09 Intr - 109822 109696 127 1 1 74 62 48 0.459 1.05 5.08 Intr - 111865 111712 154 0 1 24 87 131 0.008 6.67 5.07 Intr - 121660 121463 198 0 0 100 89 164 0.331 16.17 5.06 Intr - 127370 126978 393 1 0 58 18 291 0.541 12.87 5.05 Intr - 128653 128547 107 1 2 110 93 77 0.999 9.41 5.04 Intr - 130800 130654 147 0 0 15 74 203 0.700 12.03 5.03 Intr - 132526 132440 87 1 0 86 99 31 0.927 4.17 5.02 Intr - 144881 144751 131 0 2 46 59 119 0.984 5.21 5.01 Init - 146142 145764 379 0 1 76 72 303 0.793 22.57 5.00 Prom - 153203 153164 40 -1.36 6.00 Prom + 162661 162700 40 -2.06 6.01 Init + 172638 172812 175 2 1 50 38 187 0.805 7.84 6.02 Term + 173311 173342 32 2 2 106 48 18 0.868 -2.38 6.03 PlyA + 174922 174927 6 1.05 7.00 Prom + 178705 178744 40 -5.56 7.01 Init + 184855 185028 174 0 0 56 59 231 0.268 16.35 7.02 Term + 198480 198551 72 2 0 70 41 107 0.251 2.11 7.03 PlyA + 200459 200464 6 -1.95 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Term - 91227 91010 218 1 2 35 42 199 0.824 7.31 S.002 Intr - 93053 92885 169 2 1 101 82 72 0.976 7.42 S.003 Intr - 95519 94692 828 2 0 83 105 958 0.995 88.60 S.004 Init - 111924 111712 213 0 0 69 87 185 0.956 13.25 S.005 Term - 117227 117069 159 2 0 94 47 105 0.863 4.94 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_1|854_aa XKFIREVTPYIKKPSLVSDLPWEGAAPQSPSFSGSEDSGSPKHQNSTKDRKIIPLKMCFA ARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIMALLPQVLAELNAM LGATSTAGGSKEVKHIAWLAEQAKLDGGRQQWRPVLMAVTEKDLLLYDCMPWTRDAWASP CHSYPLVATRLVHSGSGCRSPSLGSDLTFATRTGSRQGIEMHLFRVETHRDLSSWTRILV QGCHAAAELIKEVSLGCMLNGQEVRLTIHYENGFTISRENGGSSSILYRYPFERLKMSAD DGIRNLYLDFGGPEGELDRLVDKWITCLCPTSSSPVSPASRTAPCLRRGRERCLQCEPWT LGGSRSARARPLWAALLACPRTRLPLRAAALPAHRAQRPPPGFPRRTQYLGSPGPDRGRK QRRGKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQY LDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPN IRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE ANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEA ARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMF RLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSR TNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDL LKVKKFSEDFGQES >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_1|2565_bp ntcaagttcatccgagaagtaacaccatatatcaagaagccatcattagtatcagatctg ccgtgggaaggtgcagccccccagtcaccaagctttagtggcagtgaggactctggttcg ccaaaacaccagaacagcaccaaggacaggaagatcatccctctcaaaatgtgctttgct gctagaaacctaagcatgccggatctggaaaacagattgatagagctacattctcctgat agcaggaacacgttgatcctacgctgcaaagatacagccacagcacactcctggttcgta gctatccacaccaacataatggctctcctcccacaggtgttggctgaactcaacgccatg cttggggcaaccagtacagcaggaggcagtaaagaggtgaagcatattgcctggctggca gaacaggcaaaactagatggtggaagacagcaatggagacctgtcctcatggctgtgact gagaaggatttgctgctctatgactgtatgccgtggacaagagatgcctgggcgtcacca tgccacagctacccacttgttgccaccaggttggttcattctggctccggatgtcgatcc ccctcccttggatctgaccttacatttgctaccaggacaggctctcgacagggcattgag atgcatctcttcagggtggagacacatcgggatctgtcatcctggaccaggatacttgtt cagggttgccatgctgctgctgagctgatcaaggaagtctctctaggctgcatgttaaat ggccaagaggtgaggcttactattcactatgaaaatgggttcaccatctcaagggaaaat ggaggctccagcagcatattgtaccgctacccctttgaaaggctgaagatgtctgctgat gatggcatccgaaatctatacttggattttggtggtcccgagggagaactggatagactt gtggacaaatggatcacttgcctctgtcccacctcctcgtccccagtcagtcctgcctct cgaaccgccccctgccttcgccgaggcagggagaggtgcctgcagtgcgagccgtggacg ctagggggcagccgctcggctcgggcccgaccgctctgggctgcgctcctcgcttgccct cggactcggctcccgctgcgagcggccgccctgcccgcgcaccgcgctcagcgcccaccg ccgggcttcccgcgccggacccagtacctcggctccccggggccggaccgaggccgcaag cagcgccgcgggaaagccattgatctggtgacgaaagccacagaggaggacaaagccaag aactacgaggaggcgctgcggctgtaccagcatgcggtggagtacttcctccacgctatc aagtatgaggcccacagcgacaaggccaaggagagcattcgagccaagtgcgtgcagtac ctagaccgggccgagaagctgaaggattatttacgaagcaaagagaaacacggcaagaag ccagtcaaagagaaccagagtgagggcaagggcagtgacagtgacagtgaaggggataat ccggagaaaaagaaactgcaagaacagctgatgggtgccgtcgtgatggagaagcccaac atacggtggaacgacgtggccgggctggagggggccaaggaggccctcaaagaagctgtc attttgccaatcaaattcccacacttgttcacaggcaagcgcaccccctggcgggggatt ctgctgttcggaccccctggcacagggaaatcctacctggccaaagccgtggcaacagag gccaacaactccaccttcttctctgtgtcctcctcagatctgatgtccaagtggctgggg gagagtgaaaagctggtcaagaacctgtttgagctggccaggcagcacaagccctccatc atcttcatcgatgaggtggattccctctgcgggtcccgaaatgaaaatgagagtgaggcc gcccggaggatcaaaacggagttcttggtccagatgcagggggtggggaataacaatgat gggactctggttcttggagccacaaacatcccatgggtgttggattcggccatcaggagg aggtttgaaaaacgaatttatatccccttgccggaggaagctgcccgcgcccagatgttc cggttgcatctcgggagcactccccacaacctcacggatgcaaacatccacgagctggcc cggaagacggaaggctactcgggcgcggacatcagcatcatcgtgcgggactctctcatg cagcccgtgaggaaggtgcagtcggccacacacttcaaaaaggtctgtggcccctctcgc accaaccccagcatgatgattgatgacctcctgactccatgctcaccaggggacccagga gccatggagatgacttggatggatgtccctggggacaaactcttagagcctgtggtttgc atgtcggacatgctgcggtctctggccaccacccggcccacggtgaatgcagacgacctc ctgaaagtgaagaaattctcagaggactttgggcaagagagttaa >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_2|243_aa MARLWGALSLWPLWAAVPWGGAAAVGVRACSSTAAPDGVEGPALRRSYWRHLRRLVLGPP EPPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPR QVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLA CVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMK VND >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_2|732_bp atggcccggctgtggggcgcgctgagtctttggccactgtgggcggccgtgccgtggggc ggggcggcagccgtcggtgtccgggcttgcagctccacggccgccccggacggcgtcgag ggcccggcgctgcggcgctcctattggcgccacctgaggcgtctggtgctgggtcctccc gaaccgccgttctcgcacgtgtgccaagtcggggacccggtgctgcgcggcgtggcggcc ccggtggagcgggcgcagctaggcgggcccgagctgcagcggctgacgcaacggctggtc caggtgatgcggcggcggcgctgcgtgggcctaagcgcgccgcagctgggggtgccgcgg caggtgctggcgctggagctccccgaggcgctgtgtcgggagtgcccgccccgccagcgc gcgctccgccaaatggagcccttccccctgcgcgtgttcgtgaaccccagcctgcgagtg cttgacagccgcctggtcacctttcccgagggctgcgagagcgtcgccggcttcctggcc tgcgtgccccgcttccaggcggtgcagatctcagggctggaccccaatggagaacaggtg gtgtggcaggcgagcgggtgggcagcccgcatcatccagcacgagatggaccacctgcag ggctgcctgtttattgacaaaatggacagcaggacgttcacaaacgtctattggatgaag gtgaatgactaa >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_3|486_aa MATAATIPSVATATAAALGEVEDEGLLASLFRDRFPEAQWRERPDVGRYLRELSGSGLER LRREPERLAEERAQLLQQTRDLAFANYKTFIRGAECTERIHRLFGDVEASLGRLLDRLPS FQQSCRNFVKEAEEISSNRRMNSLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAY VRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTE AELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEASRVHLFDIITQYRAIFSDEDPLL PPAMGEHTVNESAIFHGWVLQKVSQFLQVLETDLYRGIGGHLDSLLGQCMYFGLSFSRVG ADFRGQLAPVFQRVAISTFQKAIQETVEKFQEEMNSYMLISAPAILGTSNMPAAVPATQP GTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGALEDALAKVSTFCWFSA TLGLLW >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_3|1461_bp atggcgaccgcggcgactatcccatcggtagccacggccacagcagcggctctcggcgag gtggaggatgaagggctcctggcgtcgctgttccgggaccgcttccccgaggcccagtgg cgcgagcggcccgatgtgggccgctacctccgggagttgagcggctcggggctggagcgg ctgcggcgcgagcccgagcgcctggcggaggagcgggcgcagctgctgcagcagacgcgc gacttggccttcgctaactacaagaccttcatccgcggcgccgagtgcaccgagcgcatc caccgcctgtttggcgacgtggaggcgtcgctcggccgcctgctcgaccgtttgcccagc ttccagcagagctgcaggaactttgtgaaggaagccgaggagatcagctccaaccgccgg atgaatagcctgaccctaaaccggcacacagaaattttggaaatactggagattcctcag ctcatggacacctgtgtccggaacagttattatgaagaggccctggagcttgcagcctac gtacgccgactggagaggaaatactcttccatccctgtcatccagggcatcgtgaacgaa gtgcgccagtccatgcagctgatgctgagccagctgatccagcaactgaggaccaacatc cagcttcctgcctgcctccgtgtcattggctacctgcggcgcatggacgtcttcactgag gctgagttgagggtgaagtttcttcaggcccgagatgcttggctccggtccatcctgact gccattcctaatgatgatccctatttccatattacaaaaaccatcgaggcctcccgtgtc catctctttgatatcatcacccagtaccgtgccatcttctcagacgaggacccactgctg ccccctgccatgggtgagcacactgtgaatgagagtgccatcttccatggctgggtgcta cagaaggtctcacaattcctgcaggtgctggagaccgacctttaccggggcataggcggc cacctggactctctgctgggccagtgcatgtactttgggctgtccttcagccgggtggga gctgatttccggggtcagttggctcctgttttccagcgggtggccatcagcactttccag aaagcaattcaggaaacagtggagaaattccaggaagaaatgaactcctacatgctcatc tcggctccagccatcctgggcaccagtaacatgcctgctgctgtgccagccacccagccg gggacgctgcagccacccatggtgctcctagatttcccacccctcgcctgctttctcaac aatattctggttgccttcaatgatctgcgcctctgctgccctgtggccctggcgcaggat gtgactggggccttggaagatgcccttgccaaggtgagcacattctgttggttttctgct accctgggccttctctggtaa >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_4|180_aa MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_4|543_bp atgcggcctttgactgaagaggagacccgtgtcatgtttgagaagatagcgaaatacatt ggggagaatcttcaactgctggtggaccggcccgatggcacctactgtttccgtctgcac aacgaccgggtgtactatgtgagtgagaagattatgaagctggccgccaatatttccggg gacaagctggtgtcgctggggacctgctttggaaaattcactaaaacccacaagtttcgg ttgcacgtcacagctctggattaccttgcaccttatgccaagtataaagtttggataaag cctggtgcagagcagtccttcctgtatgggaaccatgtgttgaaatctggtctgggtcga atcactgaaaatacttctcagtaccagggcgtggtggtgtactccatggcagacatccct ttgggttttggggtggcagccaaatctacacaagactgcagaaaagtagaccccatggcg attgtggtatttcatcaagcagacattggggaatatgtgcggcatgaagagacgttgact taa >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_5|683_aa MAAGAGTAGPASGPGVVRDPAASQPRKRPGREGGEGARRSDTMAGGGGSSDGSGRAAGRR ASRSSGRARRGRHEPGLGGPAERGAGEARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQ IRDIMQDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKE FEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLD DAEPYLLTMAKKALKSESAASSTGKEDKQPAPGPVEKPPREPARQLRNPPTTIGMMTLKA AFKTLSGAQDSEAAFAKLDQKDLVLPTQALPASPALKNKRPRKDENESSAPADGEGGSEL QPKNKRMTISRLVLEEDSQSTEPSAGLNSSQEAASAPPSKPTVLNQPLPGEKNPKVPKGK WNSSNGVEEKETWVEEDELFQVQGKQKILLGLFLMLAEVQMRVTVMLIFQKLLVSELEKV QSQKTEPLSGSGDQPLFRGADRYDFAIMIPPGGTECFWQFAHQTGYFYFSYEVQRTVGMS HDRHVAATAHNPQGFLIDTSQGVRGQINFSTQETVYLNFGVFYEGPETDHKQKERKQLND TLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSLVIILSGI LQLYFLKRLFNVPTTTDTKKPRC >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_5|2052_bp atggccgcgggagccgggacggcgggccccgcttccggcccgggcgtcgtgcgtgaccca gcggcgtcacagccgaggaagcggcccggccgggagggcggggagggcgcgcggcgatcg gacacgatggcgggaggaggcgggagtagcgacggcagcgggcgggcagctggcaggcgg gcgtcccgcagtagcgggcgggcccggcgggggcgccacgagccggggctggggggcccg gcggagcgcggcgcgggggaggcacggctggaagaggcagtcaatcgctgggtgctcaag ttctacttccacgaggcgctgcgggcctttcggggtagccggtacggggacttcagacag atccgggacatcatgcaggactgttcctttgatatggaggctgagctcacaccactggaa tcagctatcaatgtgctggagatgattaaaacggaatttacactgacagaagcagtggtc gaatccagtagaaaactggtcaaggaagctgctgtcattatttgtatcaaaaacaaagaa tttgaaaaggcttcaaaaattttgaaaaaacatatgtccaaggaccccacaactcagaag ctgagaaatgatctcctgaatattattcgagaaaagaacttggcccatcctgttatccag aacttttcatatgagaccttccagcagaagatgctgcgcttcctggagagccacctggat gacgccgagccctacctcctcacgatggccaaaaaggctttgaaatctgagtccgctgcc tcaagtacagggaaggaagataaacagccagcaccagggcctgtggaaaagccacccaga gaacccgcaaggcagctacggaatcctccaaccaccattggaatgatgactctgaaagca gctttcaagactctgtctggtgcacaggattctgaggcagcctttgcaaaactggaccag aaggatctggttcttcctactcaagctctcccagcatcaccagccctcaaaaacaagaga cccagaaaagatgaaaacgaaagttcagccccggctgacggtgagggtggctcggaactg cagcccaagaacaagcgcatgacaataagcagattggtcttggaggaggacagccagagt actgagcccagcgcaggcctcaactcctcccaggaggccgcttcagcgccaccatccaag cccaccgttctcaaccaacccctccctggagagaagaatcccaaagtacccaaaggcaag tggaacagctctaatggggttgaagaaaaggagacttgggtggaagaggatgaactgttt caagttcagggtaagcagaagattctccttggcctcttcttgatgcttgctgaagtacag atgcgtgttactgtcatgttaatattccagaagctgcttgtctccgaactagaaaaagtt cagagccagaagacagaacctctaagtggctctggggaccagccactcttccgtggagct gatcgatatgactttgccatcatgatacctccaggaggcacggaatgcttttggcaattt gcccaccagactggatacttctatttcagttacgaggttcagcggacagtggggatgtca catgaccggcatgttgctgccacggcacataacccacagggatttctcatagacacctcc cagggtgttcggggccagattaacttctctacccaagagacagtgtacctcaactttggg gtcttctatgaggggcctgagactgatcacaaacagaaggaaagaaaacaactgaatgat actctggatgcaattgaggacggcacacaaaaggtgcagaacaatatctttcacatgtgg cgatactacaactttgcccggatgaggaaaatggctgactttttccttatccaatcaaac tataactacgtgaactggtggtcgacagcccagagccttgttattattctttctgggatc ctgcaactgtatttcttgaagcgtctcttcaatgttccaacaactacagatacaaagaag ccaagatgctaa >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_6|68_aa MKLLRRAAGAIVLTNGMCSMRVGFSGLEALKRICAPERGGACYNLDSKHKMPEWTGGGIL CDMLGPLQ >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_6|207_bp atgaagctgttgcgcagggctgcaggtgccattgtgctcactaatggtatgtgctccatg cgtgtgggcttcagcggtctggaagcactgaagaggatctgtgctccagagcggggtggg gcctgctacaaccttgactccaaacacaagatgcccgagtggactggaggcgggatcctc tgtgatatgctgggccctctacagtga >gi568815582f:69239830_69441649|GENSCAN_predicted_peptide_7|81_aa MSGSMATAEASGSDGKGQEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEAW VVYHLAVVDNAAVNIGVQVSV >gi568815582f:69239830_69441649|GENSCAN_predicted_CDS_7|246_bp atgtccggttcaatggcgactgcggaagctagcggcagcgatgggaaagggcaggaagtc gagacctcagtcacctattaccggttggaggaggtggcaaagcgcaactccttgaaggaa ctgtggcttgtgatccatgggcgagtctacgatgtcacccgcttcctcaacgaggcatgg gttgtctaccatttggctgttgtggacaatgctgcagtgaacattggtgtacaagtatct gtgtga