GENSCAN 1.0	Date run:  6-Nov-116	Time: 00:14:08

Sequence gi568815581r:56839074_57061019 : 221946 bp : 43.43% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4946   5105  160  2  1  129   36    53 0.886   4.19
 1.02 Intr +   8849   8992  144  1  0  133   62    63 0.995   8.68
 1.03 Intr +   9623   9780  158  1  2   55  123    55 0.966   4.51
 1.04 Intr +  10108  10159   52  1  1   90   95     8 0.939   0.61
 1.05 Intr +  17439  17552  114  2  0   84   93    43 0.913   5.04
 1.06 Intr +  22718  22845  128  1  2   60   91    47 0.972   1.68
 1.07 Intr +  23067  23178  112  0  1   88   73    65 0.824   5.38
 1.08 Intr +  38262  38366  105  2  0  106   28    90 0.377   5.21
 1.09 Term +  38955  39242  288  2  0  -61   48   457 0.796  22.18
 1.10 PlyA +  43713  43718    6                               1.05

 2.11 PlyA -  44517  44512    6                               1.05
 2.10 Term -  45768  45567  202  2  1   75   49   203 0.623  11.96
 2.09 Intr -  53156  52631  526  0  1   62   32   548 0.066  38.60
 2.08 Intr -  56368  56270   99  2  0  100   65    95 0.984   8.48
 2.07 Intr -  56531  56448   84  0  0  102  110    19 0.968   5.29
 2.06 Intr -  56879  56853   27  0  0   68   99    29 0.512   0.09
 2.05 Intr -  60107  60042   66  0  0   70  100    33 0.732   1.58
 2.04 Intr -  62505  62346  160  0  1   61   60   198 0.998  13.86
 2.03 Intr -  65415  65182  234  0  0   89   92   349 0.999  33.29
 2.02 Intr -  69490  69395   96  1  0  116  100    97 0.998  13.91
 2.01 Init -  74915  74319  597  2  0   95   75   920 0.987  86.68
 2.00 Prom -  82186  82147   40                              -2.46

 3.08 PlyA -  82328  82323    6                               1.05
 3.07 Term - 100081  99998   84  1  0  104   48    42 0.773  -0.55
 3.06 Intr - 103050 102962   89  1  2  111  100    80 0.970  11.19
 3.05 Intr - 107438 107369   70  2  1   64  105     7 0.484  -1.25
 3.04 Intr - 110361 110314   48  0  0   88  116    40 0.924   5.68
 3.03 Intr - 110694 110608   87  0  0   79   71    36 0.630   1.17
 3.02 Intr - 111923 111140  784  1  1   89   22   327 0.389  17.68
 3.01 Init - 121946 121702  245  2  2   84   85   263 0.999  22.81
 3.00 Prom - 125988 125949   40                              -3.26

 4.00 Prom + 128884 128923   40                              -5.76
 4.01 Init + 139087 139162   76  0  1   67   96   238 0.999  21.75
 4.02 Intr + 142009 142157  149  2  2   25  103   226 0.832  17.75
 4.03 Intr + 146305 146394   90  0  0  131   27    61 0.923   4.49
 4.04 Intr + 148622 148777  156  1  0   41  115   162 0.900  14.41
 4.05 Intr + 149143 149217   75  0  0   69   90    60 0.941   4.01
 4.06 Intr + 152026 152098   73  0  1  123  111    50 0.997   9.78
 4.07 Intr + 155908 155945   38  2  2   63  115    25 0.965   0.68
 4.08 Intr + 156434 156562  129  1  0   49   98   101 0.919   8.09
 4.09 Intr + 159326 159425  100  1  1   30   65    75 0.651  -0.92
 4.10 Intr + 161782 161919  138  2  0   99   49   306 0.989  28.24
 4.11 Intr + 162945 163108  164  1  2  115   95   156 0.993  18.69
 4.12 Term + 167100 167162   63  2  0   95   45    48 0.737  -0.91
 4.13 PlyA + 167396 167401    6                               1.05

 5.00 Prom + 167565 167604   40                              -3.56
 5.01 Init + 169642 169706   65  0  2   37   46   128 0.324   4.12
 5.02 Intr + 172610 172676   67  2  1   66  109    25 0.145   1.31
 5.03 Intr + 201638 201736   99  1  0   85   60    34 0.020   0.61
 5.04 Intr + 206624 206804  181  1  1   19   -7   295 0.098  12.54
 5.05 Term + 206987 207372  386  0  2  -49   52   658 0.922  43.55
 5.06 PlyA + 207701 207706    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  23539  23718  180  0  0   62   37   122 0.855   2.11
S.002 Term -  53156  52627  530  0  2   62   48   560 0.920  43.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:56839074_57061019|GENSCAN_predicted_peptide_1|420_aa
XCIWCQKTVHDECMKNSLKNEKCDFGEFKNLIIPPSYLTSINQMRKDKKTDYEVVFDVTK
TPPIKALQLCTLLPYYSARVLVCGGDGTVGWVLDAVDDMKIKGQEKYIPQVAVLPLGTGN
DLSNTLGWGTGYAGEIPVAQVLRNVMEADGIKLDRWKVQVTNKGYYNLRKPKEFTMNNYF
SVGPDALMALNFHAHREKAPSLFSSRILNKLELDGERVALPSLEGIIVLNIGYWGGGCRL
WEGMGDETYPLARHDDGLLEVVGVYGSFHCAQIQVKLANPFRIGQAHTVRQTATSVQMTA
KYSEKVTHPNSGVTNMRIPFSLQLELLHDDDEEERRGRGRGRGRRRRKKRKKKKKKKNKK
KKKKKKKKKKKKKKKKKEKEKKKKKKSGWILEGQNAKVKIAEILDLGEHSPLGETGQRMK

>gi568815581r:56839074_57061019|GENSCAN_predicted_CDS_1|1263_bp
nngtgcatttggtgccagaaaacagtacatgatgagtgcatgaaaaatagtttaaagaat
gaaaaatgtgattttggagaattcaaaaacctaatcattccaccaagttatttaacatcc
attaatcagatgcgtaaagacaaaaaaacagattatgaagtggtttttgatgtaactaaa
actcctcctatcaaagccctacaactctgtactcttctcccatattattcagctcgagta
cttgtttgtggaggggatgggactgtagggtgggtcctggatgcagttgatgacatgaag
attaagggacaagaaaagtacattccacaagttgcagttttgcctctgggaacaggcaac
gatctatccaatacattgggttggggtacaggttatgctggagaaattccagttgcgcag
gttttgcgaaatgtaatggaagcagatggaattaaactagatcgatggaaagttcaagta
acaaataaaggatactacaacttaagaaaacccaaggaattcacaatgaacaactatttt
tctgttggacctgatgctctcatggctctcaattttcatgctcatcgtgagaaggcacca
tctctgttttctagcagaattcttaataagctagaactggatggtgagcgagtagcactg
cccagcttggaaggtattatagttctgaacatcggatactggggcggtggctgcagacta
tgggaagggatgggggacgagacttaccctctagccaggcatgacgatggtctgctggaa
gtcgttggagtatatgggtctttccactgtgctcagattcaagtaaaactggctaatcct
tttcgaataggacaggcacatacagtgaggcagactgccacgtcggtccaaatgacagcc
aagtactcagagaaggtgacccaccccaactcaggagtaaccaacatgcgaatcccattc
tctttgcagttggagctattacatgatgatgatgaagaagaaagaagaggaagaggaaga
ggaagaggaagaagaagaagaaagaagaggaagaagaagaagaagaagaagaacaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggagaaggag
aagaagaagaaaaaaaaaagtgggtggattcttgaagggcaaaatgctaaggtgaaaata
gcagagatcctggaccttggagaacactcacctttaggggagactggacagaggatgaaa
tga

>gi568815581r:56839074_57061019|GENSCAN_predicted_peptide_2|696_aa
MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR
PQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCLKEAAVKTCL
VCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICL
VEHKTCSPASLSQASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQ
LQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLT
KRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTP
SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
EAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVAS
VAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPES
RLGRNSASWCVEWFNTKISAWHNNVEKTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLM
YKFRVDFTEALYPAFWVFSAGATLSICSPKNVKGHELIQDLLSSLHLDSSYPPDAGLSDD
DEPPNASLPPDPPLLTVPQMHSVCDQWLQDAFHISL

>gi568815581r:56839074_57061019|GENSCAN_predicted_CDS_2|2091_bp
atggcagagctgtgccccctggccgaggagctgtcgtgctccatctgcctggagcccttc
aaggagccggtcaccactccgtgcggccacaacttctgcgggtcgtgcctgaatgagacg
tgggcagtccagggctcgccatacctgtgcccgcagtgccgcgccgtctaccaggcgcga
ccgcagctgcacaagaacacggtgctgtgcaacgtggtggagcagttcctgcaggccgac
ctggcccgggagccacccgccgacgtctggacgccgcccgcccgcgcctctgcacccagc
ccgaatgcccaggtggcctgcgaccactgcctgaaggaggccgccgtgaagacgtgcttg
gtgtgcatggcctccttctgtcaggagcacctgcagccgcacttcgacagccccgccttc
caggaccacccgctgcagccgcccgttcgcgacctgttgcgccgcaaatgttcccagcac
aatcggctgcgggaatttttctgccccgagcacagcgagtgcatctgccacatctgcctg
gtggagcataagacctgctctcccgcgtccctgagccaggccagcgccgacctggaggcc
accctgaggcacaaactaactgtcatgtacagtcagatcaacggggcgtcgagagcactg
gatgatgtgagaaacaggcagcaggatgtgcggatgactgcaaacagaaaggtggagcag
ctacaacaagaatacacggaaatgaaggctctcttggacgcctcagagaccacctcgaca
aggaagataaaggaagaggagaagagggtcaacagcaagtttgacaccatttatcagatt
ctcctcaagaagaagagtgagatccagaccttgaaggaggagattgaacagagcctgacc
aagagggatgagttcgagtttctggagaaagcatcaaaactgcgaggaatctcaacaaag
ccagtctacatccccgaggtggaactgaaccacaagctgataaaaggcatccaccagagc
accatagacctcaaaaacgagctgaagcagtgcatcgggcggctccaggagcccaccccc
agttcaggtgaccctggagagcatgacccagcgtccacacacaaatccacacgccctgtg
aagaaggtctccaaagaggaaaagaaatccaagaaacctccccctgtccctgccttaccc
agcaagcttcccacgtttggagccccggaacagttagtggatttaaaacaagctggcttg
gaggctgcagccaaagccaccagctcacatccgaactcaacatctctcaaggccaaggtg
ctggagaccttcctggccaagtccagacctgagctcctggagtattacattaaagtcatc
ctggactacaacaccgcccacaacaaagtggctctgtcagagtgctatacagtagcttct
gtggctgagatgcctcagaactaccggccgcatccccagaggttcacatactgctctcag
gtgctgggcctgcactgctacaagaaggggatccactactgggaggtggagctgcagaag
aacaacttctgtggggtaggcatctgctacggaagcatgaaccggcagggcccagaaagc
aggctcggccgcaacagcgcctcctggtgcgtggagtggttcaacaccaagatctctgcc
tggcacaataacgtggagaaaaccctgccctccaccaaggccacgcgggtgggcgtgctt
ctcaactgtgaccacggctttgtcatcttcttcgctgttgccgacaaggtccacctgatg
tataagttcagggtggactttactgaggctttgtacccggctttctgggtattttctgct
ggtgccacactctccatctgctcccccaaaaatgtgaaaggtcatgagctcatccaggac
ttgctatcctccctgcatttagacagttcctacccacctgatgctggcctgtctgatgat
gatgagcctcccaatgccagcctgccccccgacccgccactcctcactgtgccccagatg
cacagtgtttgtgaccagtggctgcaggatgccttccacatcagcctctga

>gi568815581r:56839074_57061019|GENSCAN_predicted_peptide_3|468_aa
MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTNPVETPKKDYSLLPLLA
AAPQVGEKIAFKLLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFD
LVYHNENGAEVVEYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA

>gi568815581r:56839074_57061019|GENSCAN_predicted_CDS_3|1407_bp
atggcagcttccgagacggttaggctacggcttcaatttgattacccgccgccagctacc
ccgcactgtacggccttctggcttctggtcgacttgaacagatgccgagtcgtcacagat
ctcattagtctcatccgccagcgcttcggcttcagttctggggccttcctaggcctctac
ctggagggggggctcttgccccccgccgagagcgcgcgccttgtgagagacaacgactgc
ctcagagttaaattagaagagagaggagttgctgagaattctgtagtcatcagtaatggt
gacattaatttatctcttagaaaagcaaagaagcgggcatttcagttagaggagggtgaa
gaaactgaaccagattgcaaatattcaaagaagcattggaagagtcgagagaacaataac
aataatgagaaggtcttggatctggaaccaaaagctgtcacagatcagactgtcagcaaa
aaaaacaagagaaaaaataaagcaacctgtggcacagtgggtgatgataacgaagaggcc
aaaagaaaatcaccaaagaaaaaggagaaatgtgaatataaaaaaaaggctaagaatccc
aagtctccgaaagtacaggcagtgaaagactgggccaatcagagatgtagttctccaaaa
ggttctgctagaaacagccttgttaaagccaaaaggaaaggtagtgtaagcgtttgctca
aaagagagtcccagttcctcctcggagtctgaatcttgtgatgaatctatcagtgatggt
cccagcaaagtcactttggaggccagaaattcctcagagaaattaccaactgagttatca
aaggaagaaccctctaccaaaaatacaactgcagacaaactggctataaaacttggcttt
agccttacccccagcaagggcaagacctctggaacaacatcttccagttcagactctagt
gcagagtcagacgaccaatgcttgatgtcatcgagcaccccggagtgtgctgcgggtttc
ttaaagacaaatccagtagagacacccaagaaggactatagtctgttaccactgttagca
gctgcccctcaagttggagaaaagattgcatttaagcttttggagctaacatccagttac
tctcctgatgtctctgactacaaggaaggaagaatattaagccacaatccagagacccag
caagtagatatagaaattctttcatccttacctgccttgagagaacctgggaaatttgat
ttagtttatcacaatgaaaatggagccgaggtagtggagtacgctgtgacacaggagagc
aagatcactgtattttggaaagagttgattgacccaagactgattattgaatctccaagt
aacacatcaagtacagaacctgcctga

>gi568815581r:56839074_57061019|GENSCAN_predicted_peptide_4|416_aa
MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN
SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT
GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL
YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA
VNKGLYREATELWGKAEMIIEQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATN
VFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQ
LKWKALYSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMMRLVTQQE

>gi568815581r:56839074_57061019|GENSCAN_predicted_CDS_4|1251_bp
atggagctggcactgcggcgctctcccgtcccgcggtggttgctgctgctgccgctgctg
ctgggcctgaacgcaggagctgtcattgactggcccacagaggagggcaaggaagtatgg
gattatgtgacggtccgcaaggatgcctacatgttctggtggctctattatgccaccaac
tcctgcaagaacttctcagaactgcccctggtcatgtggcttcagggcggtccaggcggt
tctagcactggatttggaaactttgaggaaattgggccccttgacagtgatctcaaacca
cggaaaaccacctggctccaggctgccagtctcctatttgtggataatcccgtgggcact
gggttcagttatgtgaatggtagtggtgcctatgccaaggacctggctatggtggcttca
gacatgatggttctcctgaagaccttcttcagttgccacaaagaattccagacagttcca
ttctacattttctcagagtcctatggaggaaaaatggcagctggcattggtctagagctt
tataaggccattcagcgagggaccatcaagtgcaactttgcgggggttgccttgggtgat
tcctggatctcccctgttgattcggtgctctcctggggaccttacctgtacagcatgtct
cttctcgaagacaaaggtctggcagaggtgtctaaggttgcagagcaagtactgaatgcc
gtaaataaggggctctacagagaggccacagagctgtgggggaaagcagaaatgatcatt
gaacagcgccacgtgagacacctacaacgagatgccttaagccagctcatgaatggcccc
atcagaaagaagctcaaaattattcctgaggatcaatcctggggaggccaggctaccaac
gtctttgtgaacatggaggaggacttcatgaagccagtcattagcattgtggacgagttg
ctggaggcagggatcaacgtgacggtgtataatggacagctggatctcatcgtagatacc
atgggtcaggaggcctgggtgcggaaactgaagtggccagaactgcctaaattcagtcag
ctgaagtggaaggccctgtacagtgaccctaaatctttggaaacatctgcttttgtcaag
tcctacaagaaccttgctttctactggattctgaaagctggtcatatggttccttctgac
caaggggacatggctctgaagatgatgagactggtgactcagcaagaatag

>gi568815581r:56839074_57061019|GENSCAN_predicted_peptide_5|265_aa
MHHLNVDRYGTTATLQDSPERCSAELSCSPFPRILLEHVCFPGQHSQPSMVFVLFSRNSL
IAGLSLVHRCGPGIWHVSRPPLENADQHLFTLPQGYGQFAFGIFDDSFEIPTFSPGAQAD
GSKDPERPWETEHQSRPLANGLDAFAQLLNQFENTGPPPADEEKIQYLPTVPVTEEHVGS
GLECPVCKDDYALGEQLPRNHLFHDGCIVHRLEQHDSCPVCRKSLPGHNTATNTPAPGPT
GMNCSSSSSSPSSSSPSKENATSNS

>gi568815581r:56839074_57061019|GENSCAN_predicted_CDS_5|798_bp
atgcatcacctgaatgtggaccgctatggcaccacggccacactccaggacagccctgaa
agatgctcagctgagctcagctgctcccccttcccccggatcctcctagagcatgtctgc
ttcccgggccagcacagccagccaagtatggtgtttgtcctgttttctagaaactccttg
atagcaggcttaagtctggttcatcgatgtggccctggcatctggcacgtaagccggccg
ccgttggagaacgcggaccagcacctgttcacgctgccgcagggctacggacagtttgct
ttcggcatctttgacgacagcttcgagatccccacgttctctcctggggcgcaggctgac
ggcagcaaggaccctgagagaccgtgggagacagagcatcagtcccggcccctggccaac
ggcctggacgccttcgcacagctcctcaatcagtttgaaaacacgggccccccaccggca
gatgaagagaaaatccagtacctccccaccgtccccgtcaccgaggagcacgtaggctcc
gggctcgagtgccccgtgtgcaaggacgactacgcgctgggcgagcagctgccccgcaac
cacctgttccacgatggctgcatagtgcaccggctggagcagcacgacagctgccccgtc
tgccgaaaaagcctcccgggacacaacacggccacgaacacccccgccccgggcccgact
gggatgaactgctcctcctcgtcgtcctccccctcctccagctcgcccagtaaagagaac
gccacaagtaactcctga